Wall clock time and date at job start Sun Mar 29 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48503 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47043 * 300.00118 * 3 2 1 6 6 H 1.48499 * 109.46869 * 60.00449 * 3 2 1 7 7 C 1.37878 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00016 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52423 * 59.92341 * 9 7 2 11 11 C 1.53042 * 109.50001 * 180.02562 * 9 7 2 12 12 C 1.53037 * 109.53810 * 181.31849 * 11 9 7 13 13 C 1.53191 * 109.31166 * 298.62927 * 12 11 9 14 14 N 1.46923 * 108.77634 * 54.64112 * 13 12 11 15 15 C 1.34775 * 120.63669 * 126.36392 * 14 13 12 16 16 O 1.21586 * 120.00152 * 185.22202 * 15 14 13 17 17 N 1.34779 * 119.99585 * 5.22565 * 15 14 13 18 18 C 1.46501 * 119.99788 * 174.79923 * 17 15 14 19 19 C 1.53002 * 117.49761 * 224.01818 * 18 17 15 20 20 C 1.53004 * 117.49572 * 155.35815 * 18 17 15 21 21 C 1.46935 * 118.73478 * 306.64070 * 14 13 12 22 22 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.45796 * 61.29550 * 11 9 7 24 24 H 1.09000 * 109.44383 * 301.32969 * 11 9 7 25 25 H 1.09004 * 109.49692 * 178.67896 * 12 11 9 26 26 H 1.09000 * 109.49673 * 58.58592 * 12 11 9 27 27 H 1.08995 * 109.59022 * 294.85026 * 13 12 11 28 28 H 1.09005 * 109.70324 * 174.49405 * 13 12 11 29 29 H 0.97004 * 119.99977 * 355.06603 * 17 15 14 30 30 H 1.09000 * 115.54826 * 9.69190 * 18 17 15 31 31 H 1.08998 * 117.50030 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49615 * 145.01823 * 19 18 17 33 33 H 1.09000 * 117.49880 * 214.97536 * 20 18 17 34 34 H 1.08996 * 117.50214 * 359.97438 * 20 18 17 35 35 H 1.09004 * 109.58406 * 173.14303 * 21 14 13 36 36 H 1.08991 * 109.58243 * 293.56998 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6227 -2.5570 -0.8893 11 6 2.2449 -3.6629 -0.0005 12 6 1.4809 -4.9885 -0.0337 13 6 0.6057 -5.1003 1.2186 14 7 -0.2529 -3.9110 1.3032 15 6 -1.5893 -4.0360 1.4248 16 8 -2.2973 -3.0479 1.3983 17 7 -2.1410 -5.2565 1.5757 18 6 -3.5794 -5.3847 1.8219 19 6 -4.0261 -6.3728 2.9013 20 6 -4.2498 -6.7009 1.4229 21 6 0.3726 -2.5827 1.2465 22 1 -0.4850 0.8401 -0.0004 23 1 2.8561 -3.6185 0.9009 24 1 2.8870 -3.5918 -0.8785 25 1 2.1896 -5.8164 -0.0574 26 1 0.8507 -5.0230 -0.9224 27 1 1.2395 -5.1571 2.1035 28 1 -0.0142 -5.9947 1.1551 29 1 -1.5849 -6.0497 1.5253 30 1 -4.1596 -4.4692 1.7064 31 1 -3.2497 -6.9271 3.4286 32 1 -4.9003 -6.1074 3.4958 33 1 -5.2712 -6.6514 1.0455 34 1 -3.6207 -7.4712 0.9770 35 1 -0.4010 -1.8163 1.1989 36 1 0.9870 -2.4301 2.1337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397570525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:24 Heat of formation + Delta-G solvation = -25.858388 kcal Electronic energy + Delta-G solvation = -17444.531849 eV Core-core repulsion = 14735.500765 eV Total energy + Delta-G solvation = -2709.031083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32158 -38.86746 -37.70895 -35.40474 -33.93397 -32.86823 -31.43176 -27.05845 -26.20236 -23.51865 -23.22570 -22.90607 -21.66411 -20.47837 -19.06743 -18.21159 -17.60689 -16.64405 -16.23923 -15.89350 -15.59349 -15.20671 -14.93893 -14.57154 -14.26922 -13.99001 -13.66675 -13.49875 -12.90397 -12.64078 -12.46964 -12.32851 -12.24503 -12.20373 -11.85109 -11.63205 -11.41530 -11.23521 -10.95365 -10.82400 -10.51965 -9.84099 -9.20717 -8.09082 -6.27188 1.40558 1.41914 1.54336 1.73423 2.15464 2.42752 3.00072 3.06664 3.19926 3.81802 4.02475 4.11772 4.13589 4.18077 4.28465 4.59929 4.69109 4.78764 4.79336 4.81335 4.89933 5.04562 5.10735 5.25301 5.26578 5.28175 5.33809 5.56964 5.63212 5.66401 5.89740 5.98681 6.17046 6.36526 6.86776 7.12327 7.43151 7.67538 8.94225 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.006476 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.392619 B = 4322.408758 C = 4962.935539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.017 1.017 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.109 3.891 14 N -0.627 5.627 15 C 0.694 3.306 16 O -0.641 6.641 17 N -0.705 5.705 18 C 0.060 3.940 19 C -0.178 4.178 20 C -0.168 4.168 21 C 0.142 3.858 22 H 0.259 0.741 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.409 0.591 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -16.832 4.223 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.001 0.999 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.013 4.013 14 N -0.363 5.363 15 C 0.395 3.605 16 O -0.522 6.522 17 N -0.362 5.362 18 C -0.047 4.047 19 C -0.217 4.217 20 C -0.206 4.206 21 C 0.019 3.981 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.248 0.752 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.535 -16.006 4.218 16.745 hybrid contribution 0.368 1.152 -0.217 1.229 sum -2.167 -14.854 4.001 15.535 Atomic orbital electron populations 1.70126 1.07513 1.27152 1.50663 1.25939 0.95539 1.03069 0.94616 0.85483 0.79305 0.79344 0.77399 1.18265 1.20920 1.20850 1.21555 0.93326 0.91444 1.51036 0.91814 1.18858 0.93128 0.93968 0.92337 0.99907 1.21504 0.97613 0.94116 1.01005 1.21911 0.98993 0.98321 0.97173 1.21878 0.93576 0.86558 0.99260 1.47692 1.03966 1.09064 1.75569 1.16177 0.82518 0.83897 0.77860 1.90876 1.61796 1.39073 1.60462 1.44439 1.08417 1.05997 1.77358 1.21448 0.80947 0.96011 1.06278 1.23524 1.03970 1.01943 0.92273 1.23485 1.02676 0.96819 0.97629 1.21504 0.96829 0.81981 0.97751 0.93203 0.92237 0.92966 0.87543 0.93383 0.90008 0.88236 0.75183 0.87797 0.87401 0.87198 0.86840 0.86989 0.90716 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.24 11.39 21.45 0.24 -57.00 16 2 C 0.01 0.44 5.30 84.65 0.45 0.89 16 3 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.54 -29.99 8.56 25.60 0.22 -29.77 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.04 1.89 2.24 -11.60 -0.03 1.86 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 11 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 12 C -0.13 -3.70 6.08 30.67 0.19 -3.51 16 13 C 0.11 3.09 6.39 86.36 0.55 3.64 16 14 N -0.63 -25.99 2.98 -837.73 -2.50 -28.48 16 15 C 0.69 29.96 8.29 179.05 1.49 31.45 16 16 O -0.64 -35.22 15.33 -3.99 -0.06 -35.29 16 17 N -0.70 -21.27 5.48 -457.80 -2.51 -23.77 16 18 C 0.06 1.60 6.44 44.99 0.29 1.89 16 19 C -0.18 -3.20 10.46 30.62 0.32 -2.88 16 20 C -0.17 -2.89 10.46 30.62 0.32 -2.56 16 21 C 0.14 7.34 5.39 86.22 0.46 7.80 16 22 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 2.00 5.64 -2.38 -0.01 1.99 16 29 H 0.41 9.07 6.31 -92.71 -0.59 8.48 16 30 H 0.10 3.48 7.39 -2.39 -0.02 3.46 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 4.65 5.10 -2.38 -0.01 4.64 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.31 290.82 2.11 -74.20 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.49 Total: 18.44 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.42 Total: 4.89 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -4.76 Total: -109.25 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.06 Total: -35.29 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.31 2.11 -74.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.346 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds