Wall clock time and date at job start Sun Mar 29 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47477 * 274.93889 * 3 2 1 5 5 H 1.48501 * 109.47017 * 34.93573 * 3 2 1 6 6 H 1.48498 * 109.47303 * 154.93927 * 3 2 1 7 7 C 1.37880 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99538 * 5.04649 * 7 2 1 9 9 C 1.50697 * 120.00048 * 184.77325 * 7 2 1 10 10 H 1.08998 * 109.49843 * 325.34813 * 9 7 2 11 11 C 1.53041 * 109.49608 * 205.27945 * 9 7 2 12 12 C 1.53038 * 109.53698 * 178.71741 * 11 9 7 13 13 C 1.53185 * 109.34127 * 61.31855 * 12 11 9 14 14 N 1.46925 * 108.77601 * 305.38210 * 13 12 11 15 15 C 1.34776 * 120.62729 * 233.62531 * 14 13 12 16 16 O 1.21590 * 119.99904 * 185.04194 * 15 14 13 17 17 N 1.34773 * 120.00292 * 5.04977 * 15 14 13 18 18 C 1.46498 * 120.00274 * 174.85283 * 17 15 14 19 19 C 1.53004 * 117.50305 * 223.74848 * 18 17 15 20 20 C 1.52995 * 117.50158 * 155.08261 * 18 17 15 21 21 C 1.46919 * 118.73936 * 53.60600 * 14 13 12 22 22 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46477 * 298.71051 * 11 9 7 24 24 H 1.09007 * 109.45811 * 58.67026 * 11 9 7 25 25 H 1.09006 * 109.47199 * 301.36378 * 12 11 9 26 26 H 1.09004 * 109.49531 * 181.28852 * 12 11 9 27 27 H 1.09000 * 109.59143 * 185.59040 * 13 12 11 28 28 H 1.09005 * 109.70332 * 65.24109 * 13 12 11 29 29 H 0.97002 * 120.00319 * 354.85454 * 17 15 14 30 30 H 1.09007 * 115.54709 * 9.41810 * 18 17 15 31 31 H 1.08997 * 117.49067 * 359.97438 * 19 18 17 32 32 H 1.08992 * 117.49807 * 145.01924 * 19 18 17 33 33 H 1.09003 * 117.50383 * 214.97810 * 20 18 17 34 34 H 1.09002 * 117.49854 * 359.97438 * 20 18 17 35 35 H 1.08999 * 109.58527 * 186.60196 * 21 14 13 36 36 H 1.09007 * 109.70705 * 66.24996 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3923 2.1067 -1.3948 5 1 1.5027 2.6203 0.8018 6 1 3.5950 1.4122 0.5930 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0832 9 6 3.5076 -1.1963 0.1081 10 1 3.9113 -0.3278 -0.4123 11 6 4.0634 -2.4745 -0.5239 12 6 5.5916 -2.4629 -0.4427 13 6 6.0213 -2.4232 1.0271 14 7 5.3737 -1.2763 1.6782 15 6 6.1053 -0.3643 2.3487 16 8 5.5514 0.5290 2.9601 17 7 7.4508 -0.4423 2.3414 18 6 8.2490 0.6105 2.9744 19 6 9.4786 1.1166 2.2173 20 6 9.6516 0.2386 3.4594 21 6 3.9137 -1.1423 1.5842 22 1 -0.4850 0.8400 0.0004 23 1 3.6784 -3.3419 0.0122 24 1 3.7552 -2.5270 -1.5682 25 1 5.9762 -1.5828 -0.9582 26 1 5.9878 -3.3628 -0.9134 27 1 7.1042 -2.3148 1.0885 28 1 5.7177 -3.3448 1.5238 29 1 7.8907 -1.1955 1.9171 30 1 7.6880 1.3351 3.5648 31 1 9.6937 0.6658 1.2486 32 1 9.7267 2.1739 2.3100 33 1 10.0136 0.7188 4.3685 34 1 9.9803 -0.7895 3.3079 35 1 3.6059 -0.1887 2.0132 36 1 3.4341 -1.9581 2.1252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397570527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:26 Heat of formation + Delta-G solvation = -3.745837 kcal Electronic energy + Delta-G solvation = -17511.334692 eV Core-core repulsion = 14803.262481 eV Total energy + Delta-G solvation = -2708.072211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04742 -37.71950 -36.49328 -33.61926 -32.38269 -31.59243 -30.33827 -25.21749 -24.84071 -22.53027 -21.92526 -21.85312 -20.20839 -18.99061 -17.79045 -16.74029 -16.52059 -15.00795 -14.85132 -14.70243 -14.19546 -13.85515 -13.66948 -13.02790 -12.75932 -12.71765 -12.49694 -12.27950 -11.74814 -11.34256 -11.24654 -11.04872 -10.61951 -10.57776 -10.56486 -10.08301 -9.78002 -9.62586 -9.32903 -9.12443 -8.70823 -8.54020 -7.93130 -6.09216 -4.10089 2.90567 3.34319 3.40478 3.45580 3.56626 3.93796 4.09926 4.46461 4.68005 4.85717 4.87713 5.11255 5.23231 5.33955 5.45000 5.46297 5.64491 5.77443 5.85249 5.91354 5.99767 6.15297 6.27823 6.42934 6.59959 6.66351 6.69184 6.77957 6.94849 7.22817 7.36125 7.43793 7.76876 8.28151 8.50446 8.94200 8.97426 9.54361 11.03026 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.007621 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.842742 B = 3673.362888 C = 4266.969792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.624 5.624 15 C 0.705 3.295 16 O -0.591 6.591 17 N -0.725 5.725 18 C 0.106 3.894 19 C -0.199 4.199 20 C -0.194 4.194 21 C 0.129 3.871 22 H 0.264 0.736 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.394 0.606 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.579 -3.190 2.635 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.140 4.140 12 C -0.175 4.175 13 C -0.008 4.008 14 N -0.361 5.361 15 C 0.407 3.593 16 O -0.468 6.468 17 N -0.382 5.382 18 C -0.002 4.002 19 C -0.238 4.238 20 C -0.233 4.233 21 C 0.008 3.992 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.155 0.845 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.933 -2.425 3.077 18.356 hybrid contribution 0.691 0.510 -0.299 0.910 sum 18.624 -1.915 2.778 18.928 Atomic orbital electron populations 1.69907 1.06375 1.27119 1.49853 1.25047 0.94665 0.99084 0.93872 0.86987 0.81625 0.83801 0.78181 1.20637 1.21313 1.17572 1.20907 0.88656 0.94640 1.51092 0.90667 1.19496 0.96859 0.94210 0.90930 0.94906 1.21509 0.91673 0.99669 1.01153 1.22002 0.99172 1.01337 0.95003 1.21543 0.95661 0.89423 0.94166 1.47756 1.09088 1.24797 1.54412 1.15887 0.80913 0.82514 0.80016 1.90886 1.70630 1.37145 1.48188 1.44707 1.04925 1.26230 1.62294 1.21365 0.85986 0.93393 0.99409 1.23451 1.03608 1.00338 0.96451 1.23382 1.00306 1.00821 0.98784 1.22416 0.74027 1.02382 1.00411 0.92571 0.92686 0.92204 0.92145 0.91802 0.91984 0.91573 0.76979 0.84511 0.88720 0.88166 0.88072 0.88758 0.89969 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 22.43 26.43 -169.99 -4.49 17.94 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.25 -6.58 5.79 56.52 0.33 -6.25 16 7 C -0.51 -14.18 8.87 -34.44 -0.31 -14.48 16 8 H 0.08 2.22 8.05 -52.49 -0.42 1.80 16 9 C 0.00 0.11 1.78 -91.65 -0.16 -0.05 16 10 H 0.03 0.80 5.71 -51.93 -0.30 0.51 16 11 C -0.10 -1.91 5.15 -26.69 -0.14 -2.05 16 12 C -0.14 -1.99 6.08 -26.62 -0.16 -2.16 16 13 C 0.12 1.61 6.43 -3.71 -0.02 1.59 16 14 N -0.62 -11.64 2.97 -178.50 -0.53 -12.17 16 15 C 0.70 13.57 8.29 -86.92 -0.72 12.85 16 16 O -0.59 -13.91 15.34 5.29 0.08 -13.83 16 17 N -0.73 -10.34 5.48 -58.68 -0.32 -10.66 16 18 C 0.11 1.34 6.44 -67.93 -0.44 0.90 16 19 C -0.20 -1.96 10.46 -26.69 -0.28 -2.24 16 20 C -0.19 -1.76 10.46 -26.69 -0.28 -2.04 16 21 C 0.13 2.87 5.40 -3.71 -0.02 2.85 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.66 5.57 -51.93 -0.29 0.38 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 4.44 6.28 -40.82 -0.26 4.19 16 30 H 0.14 1.98 7.39 -51.93 -0.38 1.60 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 2.09 5.55 -51.93 -0.29 1.80 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -33.00 287.29 -8.16 -41.16 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.37 Total: 2.57 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.63 Total: -2.71 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.08 Total: -49.45 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.49 Total: 17.94 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.00 -8.16 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.415 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds