Wall clock time and date at job start Sun Mar 29 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47477 * 274.93889 * 3 2 1 5 5 H 1.48501 * 109.47017 * 34.93573 * 3 2 1 6 6 H 1.48498 * 109.47303 * 154.93927 * 3 2 1 7 7 C 1.37880 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99538 * 5.04649 * 7 2 1 9 9 C 1.50697 * 120.00048 * 184.77325 * 7 2 1 10 10 H 1.08998 * 109.49843 * 325.34813 * 9 7 2 11 11 C 1.53041 * 109.49608 * 205.27945 * 9 7 2 12 12 C 1.53038 * 109.53698 * 178.71741 * 11 9 7 13 13 C 1.53185 * 109.34127 * 61.31855 * 12 11 9 14 14 N 1.46925 * 108.77601 * 305.38210 * 13 12 11 15 15 C 1.34776 * 120.62729 * 233.62531 * 14 13 12 16 16 O 1.21590 * 119.99904 * 185.04194 * 15 14 13 17 17 N 1.34773 * 120.00292 * 5.04977 * 15 14 13 18 18 C 1.46498 * 120.00274 * 174.85283 * 17 15 14 19 19 C 1.53004 * 117.50305 * 223.74848 * 18 17 15 20 20 C 1.52995 * 117.50158 * 155.08261 * 18 17 15 21 21 C 1.46919 * 118.73936 * 53.60600 * 14 13 12 22 22 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46477 * 298.71051 * 11 9 7 24 24 H 1.09007 * 109.45811 * 58.67026 * 11 9 7 25 25 H 1.09006 * 109.47199 * 301.36378 * 12 11 9 26 26 H 1.09004 * 109.49531 * 181.28852 * 12 11 9 27 27 H 1.09000 * 109.59143 * 185.59040 * 13 12 11 28 28 H 1.09005 * 109.70332 * 65.24109 * 13 12 11 29 29 H 0.97002 * 120.00319 * 354.85454 * 17 15 14 30 30 H 1.09007 * 115.54709 * 9.41810 * 18 17 15 31 31 H 1.08997 * 117.49067 * 359.97438 * 19 18 17 32 32 H 1.08992 * 117.49807 * 145.01924 * 19 18 17 33 33 H 1.09003 * 117.50383 * 214.97810 * 20 18 17 34 34 H 1.09002 * 117.49854 * 359.97438 * 20 18 17 35 35 H 1.08999 * 109.58527 * 186.60196 * 21 14 13 36 36 H 1.09007 * 109.70705 * 66.24996 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3923 2.1067 -1.3948 5 1 1.5027 2.6203 0.8018 6 1 3.5950 1.4122 0.5930 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0832 9 6 3.5076 -1.1963 0.1081 10 1 3.9113 -0.3278 -0.4123 11 6 4.0634 -2.4745 -0.5239 12 6 5.5916 -2.4629 -0.4427 13 6 6.0213 -2.4232 1.0271 14 7 5.3737 -1.2763 1.6782 15 6 6.1053 -0.3643 2.3487 16 8 5.5514 0.5290 2.9601 17 7 7.4508 -0.4423 2.3414 18 6 8.2490 0.6105 2.9744 19 6 9.4786 1.1166 2.2173 20 6 9.6516 0.2386 3.4594 21 6 3.9137 -1.1423 1.5842 22 1 -0.4850 0.8400 0.0004 23 1 3.6784 -3.3419 0.0122 24 1 3.7552 -2.5270 -1.5682 25 1 5.9762 -1.5828 -0.9582 26 1 5.9878 -3.3628 -0.9134 27 1 7.1042 -2.3148 1.0885 28 1 5.7177 -3.3448 1.5238 29 1 7.8907 -1.1955 1.9171 30 1 7.6880 1.3351 3.5648 31 1 9.6937 0.6658 1.2486 32 1 9.7267 2.1739 2.3100 33 1 10.0136 0.7188 4.3685 34 1 9.9803 -0.7895 3.3079 35 1 3.6059 -0.1887 2.0132 36 1 3.4341 -1.9581 2.1252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397570527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:26 Heat of formation + Delta-G solvation = -26.769133 kcal Electronic energy + Delta-G solvation = -17512.333058 eV Core-core repulsion = 14803.262481 eV Total energy + Delta-G solvation = -2709.070576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45055 -38.95831 -37.78956 -35.39182 -34.07703 -32.96272 -32.00209 -27.09112 -26.32757 -23.43488 -23.24371 -22.97849 -21.64967 -20.52685 -19.32343 -18.70994 -17.69303 -16.62991 -16.30858 -15.97620 -15.66945 -15.25485 -15.17689 -14.78197 -14.40778 -14.10172 -13.81350 -13.65653 -13.05512 -12.79902 -12.59090 -12.47036 -12.32759 -12.04266 -11.80177 -11.60203 -11.44230 -11.39199 -11.06748 -10.98928 -10.73321 -9.93121 -9.32649 -8.35820 -6.37533 1.23497 1.32085 1.45285 1.60774 2.05788 2.28665 2.88243 3.03015 3.05172 3.79471 3.98503 4.06971 4.11111 4.14971 4.15643 4.48035 4.56639 4.66437 4.73627 4.77876 4.83121 4.96677 5.02030 5.03340 5.13011 5.23425 5.23677 5.43641 5.57165 5.60072 5.63623 5.72343 6.02595 6.29611 6.71748 7.00315 7.29367 7.54565 8.80400 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.007621 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.842742 B = 3673.362888 C = 4266.969792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.025 3.975 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.046 0.954 9 C 0.005 3.995 10 H 0.020 0.980 11 C -0.101 4.101 12 C -0.127 4.127 13 C 0.110 3.890 14 N -0.628 5.628 15 C 0.697 3.303 16 O -0.645 6.645 17 N -0.703 5.703 18 C 0.061 3.939 19 C -0.185 4.185 20 C -0.163 4.163 21 C 0.141 3.859 22 H 0.266 0.734 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.411 0.589 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.043 0.957 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.502 -4.274 2.166 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.752 3.248 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.548 4.548 8 H 0.064 0.936 9 C -0.015 4.015 10 H 0.038 0.962 11 C -0.138 4.138 12 C -0.165 4.165 13 C -0.012 4.012 14 N -0.363 5.363 15 C 0.399 3.601 16 O -0.527 6.527 17 N -0.360 5.360 18 C -0.046 4.046 19 C -0.224 4.224 20 C -0.201 4.201 21 C 0.017 3.983 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.251 0.749 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.941 -3.549 2.580 22.375 hybrid contribution -0.490 0.777 -0.121 0.927 sum 21.450 -2.772 2.459 21.768 Atomic orbital electron populations 1.70017 1.07777 1.27866 1.52350 1.25720 0.95204 1.02095 0.94274 0.86057 0.79825 0.80425 0.78469 1.19194 1.21790 1.18375 1.21247 0.91274 0.93185 1.49136 0.93566 1.19448 0.93923 0.96305 0.91841 0.96166 1.21430 0.95145 0.96965 1.00303 1.21947 0.95427 1.03351 0.95783 1.21925 0.97736 0.88179 0.93357 1.47629 1.07589 1.26229 1.54896 1.16126 0.82413 0.81868 0.79734 1.90847 1.72048 1.39329 1.50453 1.44440 1.02965 1.27003 1.61619 1.21475 0.87087 0.93997 1.02023 1.23534 1.00270 1.01269 0.97331 1.23485 0.95831 1.01850 0.98967 1.21828 0.77005 1.00249 0.99172 0.92497 0.92387 0.92638 0.92483 0.87454 0.87873 0.89795 0.74939 0.87456 0.87605 0.87411 0.86730 0.86813 0.93848 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.03 1.52 5.47 84.66 0.46 1.98 16 3 Si 0.93 48.07 26.43 68.60 1.81 49.89 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 6 H -0.26 -13.70 5.79 99.48 0.58 -13.13 16 7 C -0.51 -28.92 8.87 25.60 0.23 -28.69 16 8 H 0.05 2.83 8.05 -2.91 -0.02 2.81 16 9 C 0.00 0.22 1.78 -11.46 -0.02 0.20 16 10 H 0.02 0.99 5.71 -2.39 -0.01 0.97 16 11 C -0.10 -3.59 5.15 30.62 0.16 -3.43 16 12 C -0.13 -3.18 6.08 30.67 0.19 -3.00 16 13 C 0.11 2.61 6.43 86.36 0.56 3.16 16 14 N -0.63 -22.53 2.97 -836.92 -2.49 -25.02 16 15 C 0.70 26.32 8.29 179.06 1.49 27.80 16 16 O -0.64 -31.20 15.34 -4.00 -0.06 -31.27 16 17 N -0.70 -18.33 5.48 -457.81 -2.51 -20.84 16 18 C 0.06 1.42 6.44 44.99 0.29 1.71 16 19 C -0.19 -3.00 10.46 30.62 0.32 -2.68 16 20 C -0.16 -2.31 10.46 30.62 0.32 -1.99 16 21 C 0.14 6.35 5.40 86.36 0.47 6.82 16 22 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.10 1.62 5.57 -2.39 -0.01 1.61 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.41 7.49 6.28 -92.71 -0.58 6.91 16 30 H 0.11 3.16 7.39 -2.38 -0.02 3.14 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 2.28 5.55 -2.39 -0.01 2.27 16 36 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -76.42 287.29 1.87 -74.56 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.36 Total: 10.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.45 Total: 1.88 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.70 Total: -105.09 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.06 Total: -31.27 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.81 Total: 49.89 kcal Total: -76.42 1.87 -74.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds