Wall clock time and date at job start Sun Mar 29 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00141 * 2 1 4 4 N 1.46494 * 109.47207 * 125.27125 * 3 2 1 5 5 C 1.34782 * 120.00308 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99379 * 354.90072 * 5 4 3 7 7 N 1.34768 * 120.00401 * 174.90343 * 5 4 3 8 8 C 1.46929 * 120.63069 * 4.75260 * 7 5 4 9 9 C 1.52764 * 109.00592 * 233.58332 * 8 7 5 10 10 C 1.53035 * 109.38641 * 305.58928 * 9 8 7 11 11 C 1.53039 * 109.54135 * 61.23700 * 10 9 8 12 12 H 1.09004 * 109.49381 * 58.58931 * 11 10 9 13 13 C 1.50697 * 109.49860 * 178.68633 * 11 10 9 14 14 H 1.08003 * 119.99952 * 5.24045 * 13 11 10 15 15 C 1.37874 * 119.99851 * 185.23916 * 13 11 10 16 16 N 1.31513 * 120.00091 * 355.12497 * 15 13 11 17 17 Si 1.86804 * 119.99895 * 175.12358 * 15 13 11 18 18 H 1.48497 * 109.47099 * 95.00240 * 17 15 13 19 19 H 1.48507 * 109.46983 * 214.99725 * 17 15 13 20 20 H 1.48495 * 109.47116 * 334.99846 * 17 15 13 21 21 C 1.46924 * 120.63441 * 185.03006 * 7 5 4 22 22 H 1.08006 * 120.00264 * 179.72842 * 1 2 3 23 23 H 1.07999 * 120.00487 * 359.72166 * 1 2 3 24 24 H 1.07999 * 120.00486 * 180.27221 * 2 1 3 25 25 H 1.08996 * 109.47060 * 245.27864 * 3 2 1 26 26 H 1.09004 * 109.46523 * 5.28045 * 3 2 1 27 27 H 0.97003 * 120.00414 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.58513 * 353.41205 * 8 7 5 29 29 H 1.08994 * 109.59062 * 113.84838 * 8 7 5 30 30 H 1.08997 * 109.56481 * 185.54851 * 9 8 7 31 31 H 1.08999 * 109.38602 * 65.51428 * 9 8 7 32 32 H 1.09010 * 109.45744 * 301.21652 * 10 9 8 33 33 H 1.09002 * 109.45375 * 181.25661 * 10 9 8 34 34 H 0.97004 * 119.99747 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.59071 * 246.15777 * 21 7 5 36 36 H 1.09004 * 109.58456 * 6.58134 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9983 1.3292 1.1276 5 6 3.7837 2.4059 1.3290 6 8 3.7841 3.3171 0.5240 7 7 4.5686 2.4724 2.4225 8 6 4.6580 1.3364 3.3501 9 6 4.3482 1.8234 4.7645 10 6 5.2712 2.9935 5.1124 11 6 5.0247 4.1473 4.1376 12 1 3.9801 4.4537 4.1933 13 6 5.9109 5.3107 4.5008 14 1 6.6427 5.2069 5.2884 15 6 5.7877 6.5076 3.8277 16 7 4.9652 6.6060 2.8062 17 14 6.7889 7.9897 4.3667 18 1 8.0311 8.0690 3.5568 19 1 5.9895 9.2255 4.1691 20 1 7.1421 7.8529 5.8025 21 6 5.3465 3.6845 2.7132 22 1 -0.5401 -0.9353 -0.0044 23 1 -0.5401 0.9352 0.0045 24 1 1.8500 -0.9352 -0.0044 25 1 2.6173 1.4049 -0.9334 26 1 1.3588 2.1314 0.0946 27 1 3.0522 0.5703 1.7294 28 1 3.9364 0.5720 3.0622 29 1 5.6650 0.9204 3.3224 30 1 4.5077 1.0110 5.4734 31 1 3.3100 2.1516 4.8149 32 1 6.3099 2.6712 5.0383 33 1 5.0663 3.3275 6.1296 34 1 4.8788 7.4480 2.3324 35 1 6.4109 3.4638 2.6323 36 1 5.0790 4.4688 2.0050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397642796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:18 Heat of formation + Delta-G solvation = -11.786913 kcal Electronic energy + Delta-G solvation = -17324.218987 eV Core-core repulsion = 14615.798088 eV Total energy + Delta-G solvation = -2708.420898 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67040 -36.99927 -35.43165 -33.45233 -32.36356 -31.53287 -29.72574 -26.27818 -25.00893 -23.79330 -21.79065 -20.35160 -19.96059 -18.61882 -17.49733 -16.27075 -15.89776 -15.29656 -14.62703 -14.55038 -13.89447 -13.71752 -13.51310 -13.10734 -12.81719 -12.58318 -12.40781 -11.91227 -11.86086 -11.22034 -10.99184 -10.85268 -10.49393 -10.36911 -10.22587 -9.83900 -9.82646 -9.36008 -9.04795 -8.89365 -8.66707 -8.42493 -7.59940 -5.96134 -4.04468 1.98350 3.32675 3.40274 3.41971 3.44641 3.90090 4.43436 4.51764 4.74208 4.99894 5.31280 5.34337 5.52466 5.58591 5.64137 5.74562 5.84839 6.00726 6.18737 6.34494 6.39271 6.52072 6.62522 6.69016 6.84159 6.88482 7.01542 7.09952 7.37769 7.55275 7.77248 7.95751 8.08416 8.44109 8.63201 8.99950 9.29649 9.61122 11.09689 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.006189 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.095594 B = 4523.253154 C = 5095.411441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 C 0.165 3.835 4 N -0.755 5.755 5 C 0.700 3.300 6 O -0.585 6.585 7 N -0.623 5.623 8 C 0.116 3.884 9 C -0.134 4.134 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.030 0.970 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.879 5.879 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.130 3.870 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.391 0.609 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.039 0.961 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -14.115 -1.344 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.041 3.959 4 N -0.415 5.415 5 C 0.401 3.599 6 O -0.463 6.463 7 N -0.360 5.360 8 C -0.008 4.008 9 C -0.172 4.172 10 C -0.147 4.147 11 C 0.020 3.980 12 H 0.048 0.952 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.010 3.990 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.318 -13.259 -2.084 14.436 hybrid contribution 0.501 0.334 0.567 0.827 sum -4.817 -12.925 -1.517 13.876 Atomic orbital electron populations 1.23936 0.95802 1.02207 0.99145 1.23066 0.96205 0.98329 1.01191 1.20160 0.91223 0.94734 0.89807 1.45306 1.43455 1.20091 1.32661 1.15960 0.79103 0.82313 0.82481 1.90914 1.70664 1.38835 1.45843 1.47791 1.47637 1.17866 1.22663 1.21400 1.00386 0.88490 0.90543 1.21879 1.01002 0.99123 0.95241 1.21617 0.97525 0.95443 1.00153 1.19004 0.97834 0.91574 0.89604 0.95166 1.21071 1.20189 0.95684 1.19110 0.92385 1.25059 0.95328 0.98845 0.94748 1.69931 1.36379 1.26044 1.19230 0.86594 0.80045 0.82505 0.78946 1.20728 1.21186 1.19891 1.22194 0.91613 0.83587 1.01623 0.88164 0.88138 0.86982 0.91085 0.91540 0.77309 0.92157 0.92176 0.92326 0.92215 0.93240 0.93025 0.92699 0.94237 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 14.32 29.02 0.42 -1.12 16 2 C -0.17 -1.69 9.63 -36.02 -0.35 -2.04 16 3 C 0.17 2.27 6.12 -5.19 -0.03 2.24 16 4 N -0.76 -11.86 5.46 -66.42 -0.36 -12.23 16 5 C 0.70 14.85 8.30 -86.92 -0.72 14.13 16 6 O -0.59 -15.16 15.79 5.29 0.08 -15.08 16 7 N -0.62 -12.92 2.98 -178.76 -0.53 -13.45 16 8 C 0.12 1.83 6.40 -3.93 -0.03 1.80 16 9 C -0.13 -2.17 6.06 -26.83 -0.16 -2.33 16 10 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 11 C 0.04 0.98 2.19 -91.65 -0.20 0.78 16 12 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.52 -14.30 8.49 -34.44 -0.29 -14.60 16 14 H 0.06 1.55 7.75 -52.48 -0.41 1.15 16 15 C 0.06 1.78 5.36 -17.82 -0.10 1.68 16 16 N -0.88 -26.10 11.61 55.43 0.64 -25.46 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 C 0.13 3.24 5.46 -3.71 -0.02 3.22 16 22 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 23 H 0.10 0.90 7.84 -52.49 -0.41 0.49 16 24 H 0.11 0.95 8.06 -52.49 -0.42 0.52 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 27 H 0.39 4.99 5.92 -40.82 -0.24 4.75 16 28 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.12 3.44 5.38 -51.93 -0.28 3.16 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -32.32 293.96 -7.77 -40.09 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.40 Total: 3.81 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.62 Total: 1.44 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.25 Total: -51.13 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.32 -7.77 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.307 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds