Wall clock time and date at job start Sun Mar 29 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00141 * 2 1 4 4 N 1.46494 * 109.47207 * 125.27125 * 3 2 1 5 5 C 1.34782 * 120.00308 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99379 * 354.90072 * 5 4 3 7 7 N 1.34768 * 120.00401 * 174.90343 * 5 4 3 8 8 C 1.46929 * 120.63069 * 4.75260 * 7 5 4 9 9 C 1.52764 * 109.00592 * 233.58332 * 8 7 5 10 10 C 1.53035 * 109.38641 * 305.58928 * 9 8 7 11 11 C 1.53039 * 109.54135 * 61.23700 * 10 9 8 12 12 H 1.09004 * 109.49381 * 58.58931 * 11 10 9 13 13 C 1.50697 * 109.49860 * 178.68633 * 11 10 9 14 14 H 1.08003 * 119.99952 * 5.24045 * 13 11 10 15 15 C 1.37874 * 119.99851 * 185.23916 * 13 11 10 16 16 N 1.31513 * 120.00091 * 355.12497 * 15 13 11 17 17 Si 1.86804 * 119.99895 * 175.12358 * 15 13 11 18 18 H 1.48497 * 109.47099 * 95.00240 * 17 15 13 19 19 H 1.48507 * 109.46983 * 214.99725 * 17 15 13 20 20 H 1.48495 * 109.47116 * 334.99846 * 17 15 13 21 21 C 1.46924 * 120.63441 * 185.03006 * 7 5 4 22 22 H 1.08006 * 120.00264 * 179.72842 * 1 2 3 23 23 H 1.07999 * 120.00487 * 359.72166 * 1 2 3 24 24 H 1.07999 * 120.00486 * 180.27221 * 2 1 3 25 25 H 1.08996 * 109.47060 * 245.27864 * 3 2 1 26 26 H 1.09004 * 109.46523 * 5.28045 * 3 2 1 27 27 H 0.97003 * 120.00414 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.58513 * 353.41205 * 8 7 5 29 29 H 1.08994 * 109.59062 * 113.84838 * 8 7 5 30 30 H 1.08997 * 109.56481 * 185.54851 * 9 8 7 31 31 H 1.08999 * 109.38602 * 65.51428 * 9 8 7 32 32 H 1.09010 * 109.45744 * 301.21652 * 10 9 8 33 33 H 1.09002 * 109.45375 * 181.25661 * 10 9 8 34 34 H 0.97004 * 119.99747 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.59071 * 246.15777 * 21 7 5 36 36 H 1.09004 * 109.58456 * 6.58134 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9983 1.3292 1.1276 5 6 3.7837 2.4059 1.3290 6 8 3.7841 3.3171 0.5240 7 7 4.5686 2.4724 2.4225 8 6 4.6580 1.3364 3.3501 9 6 4.3482 1.8234 4.7645 10 6 5.2712 2.9935 5.1124 11 6 5.0247 4.1473 4.1376 12 1 3.9801 4.4537 4.1933 13 6 5.9109 5.3107 4.5008 14 1 6.6427 5.2069 5.2884 15 6 5.7877 6.5076 3.8277 16 7 4.9652 6.6060 2.8062 17 14 6.7889 7.9897 4.3667 18 1 8.0311 8.0690 3.5568 19 1 5.9895 9.2255 4.1691 20 1 7.1421 7.8529 5.8025 21 6 5.3465 3.6845 2.7132 22 1 -0.5401 -0.9353 -0.0044 23 1 -0.5401 0.9352 0.0045 24 1 1.8500 -0.9352 -0.0044 25 1 2.6173 1.4049 -0.9334 26 1 1.3588 2.1314 0.0946 27 1 3.0522 0.5703 1.7294 28 1 3.9364 0.5720 3.0622 29 1 5.6650 0.9204 3.3224 30 1 4.5077 1.0110 5.4734 31 1 3.3100 2.1516 4.8149 32 1 6.3099 2.6712 5.0383 33 1 5.0663 3.3275 6.1296 34 1 4.8788 7.4480 2.3324 35 1 6.4109 3.4638 2.6323 36 1 5.0790 4.4688 2.0050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397642796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:18 Heat of formation + Delta-G solvation = -33.783709 kcal Electronic energy + Delta-G solvation = -17325.172839 eV Core-core repulsion = 14615.798088 eV Total energy + Delta-G solvation = -2709.374751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28496 -38.60185 -36.71459 -35.32051 -33.84856 -33.01217 -31.50502 -27.65397 -26.85661 -25.36169 -23.43753 -21.74762 -21.22726 -20.12157 -19.03725 -18.22870 -17.35724 -16.74007 -16.46835 -15.95025 -15.33089 -15.19184 -15.15644 -14.41422 -14.39961 -14.11791 -13.92834 -13.53617 -13.25286 -12.90400 -12.65002 -12.32549 -12.21406 -12.01537 -11.83871 -11.62452 -11.27215 -10.93247 -10.85951 -10.56904 -10.52531 -10.08745 -9.25624 -8.10515 -6.27174 1.15821 1.41586 1.41855 1.53667 1.97287 2.24752 2.43031 3.11006 3.21287 3.86817 4.06465 4.16953 4.19737 4.29141 4.58669 4.60571 4.72760 4.76383 4.81980 4.86823 5.01004 5.11625 5.26662 5.28867 5.32849 5.48685 5.57524 5.63655 5.66381 5.82635 5.89373 5.97465 6.17469 6.36375 6.87028 7.13899 7.43118 7.67245 8.93860 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.006189 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.095594 B = 4523.253154 C = 5095.411441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.176 4.176 3 C 0.162 3.838 4 N -0.731 5.731 5 C 0.691 3.309 6 O -0.644 6.644 7 N -0.628 5.628 8 C 0.110 3.890 9 C -0.126 4.126 10 C -0.105 4.105 11 C 0.038 3.962 12 H -0.014 1.014 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.008 3.992 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.260 1.260 21 C 0.144 3.856 22 H 0.129 0.871 23 H 0.093 0.907 24 H 0.137 0.863 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.409 0.591 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -16.918 -0.020 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.038 3.962 4 N -0.391 5.391 5 C 0.392 3.608 6 O -0.526 6.526 7 N -0.363 5.363 8 C -0.012 4.012 9 C -0.164 4.164 10 C -0.143 4.143 11 C 0.019 3.981 12 H 0.005 0.995 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.556 5.556 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.184 1.184 21 C 0.021 3.979 22 H 0.147 0.853 23 H 0.112 0.888 24 H 0.154 0.846 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.248 0.752 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.377 -16.146 -0.716 17.033 hybrid contribution 0.450 1.172 0.145 1.263 sum -4.927 -14.974 -0.571 15.775 Atomic orbital electron populations 1.24174 0.95460 1.03281 0.96606 1.22909 0.96356 0.96870 1.03319 1.20268 0.90606 0.96754 0.88559 1.45100 1.42019 1.18826 1.33181 1.16264 0.79563 0.82893 0.82082 1.90869 1.72419 1.41350 1.47915 1.47697 1.47027 1.18050 1.23567 1.21794 1.02964 0.87361 0.89129 1.21839 0.99198 0.98828 0.96533 1.21510 0.99153 0.95054 0.98548 1.18931 0.94690 0.93256 0.91247 0.99541 1.21533 1.20289 0.96799 1.18832 0.91817 1.25932 0.96467 1.02041 0.94655 1.70134 1.38407 1.26384 1.20638 0.85532 0.78377 0.78585 0.79107 1.20221 1.21299 1.18434 1.21598 0.91687 0.84364 1.00225 0.85322 0.88817 0.84550 0.92252 0.93443 0.75150 0.88117 0.90130 0.87553 0.93278 0.92333 0.92921 0.93192 0.94620 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 14.32 67.79 0.97 -1.35 16 2 C -0.18 -3.06 9.63 25.66 0.25 -2.81 16 3 C 0.16 4.39 6.12 85.64 0.52 4.92 16 4 N -0.73 -22.18 5.46 -482.30 -2.63 -24.81 16 5 C 0.69 29.84 8.30 179.06 1.49 31.33 16 6 O -0.64 -35.24 15.79 -3.98 -0.06 -35.30 16 7 N -0.63 -26.04 2.98 -837.75 -2.49 -28.53 16 8 C 0.11 3.10 6.40 86.22 0.55 3.65 16 9 C -0.13 -3.67 6.06 30.53 0.19 -3.48 16 10 C -0.10 -4.06 5.11 30.62 0.16 -3.90 16 11 C 0.04 1.97 2.19 -11.46 -0.03 1.94 16 12 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 13 C -0.54 -29.99 8.49 25.60 0.22 -29.77 16 14 H 0.06 3.40 7.75 -2.91 -0.02 3.38 16 15 C 0.01 0.48 5.36 84.65 0.45 0.94 16 16 N -0.92 -57.28 11.61 21.45 0.25 -57.03 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.14 7.44 5.46 86.36 0.47 7.92 16 22 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 23 H 0.09 1.52 7.84 -2.91 -0.02 1.49 16 24 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.46 7.79 -2.38 -0.02 1.44 16 27 H 0.41 9.16 5.92 -92.71 -0.55 8.61 16 28 H 0.10 2.04 5.57 -2.39 -0.01 2.02 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 4.23 5.38 -2.38 -0.01 4.21 16 Total: -1.00 -76.21 293.96 2.83 -73.38 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.51 Total: 15.97 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.24 Total: 9.37 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.88 Total: -110.38 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.30 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.21 2.83 -73.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -76.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds