Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00007 * 2 1 4 4 N 1.46507 * 109.47108 * 124.99894 * 3 2 1 5 5 C 1.34773 * 120.00118 * 179.97438 * 4 3 2 6 6 O 1.21593 * 119.99914 * 5.07795 * 5 4 3 7 7 N 1.34770 * 120.00080 * 185.07823 * 5 4 3 8 8 C 1.46927 * 120.62986 * 354.96734 * 7 5 4 9 9 C 1.53188 * 108.77625 * 126.43560 * 8 7 5 10 10 C 1.53045 * 109.31316 * 54.63203 * 9 8 7 11 11 C 1.53035 * 109.53790 * 298.63914 * 10 9 8 12 12 H 1.08996 * 109.49610 * 301.37443 * 11 10 9 13 13 C 1.50707 * 109.49445 * 181.31775 * 11 10 9 14 14 H 1.07993 * 120.00358 * 0.05823 * 13 11 10 15 15 C 1.37880 * 119.99880 * 179.78866 * 13 11 10 16 16 N 1.31515 * 119.99808 * 0.27226 * 15 13 11 17 17 Si 1.86794 * 119.99918 * 180.27337 * 15 13 11 18 18 H 1.48499 * 109.47367 * 60.00016 * 17 15 13 19 19 H 1.48503 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47106 * 299.99556 * 17 15 13 21 21 C 1.46929 * 120.60557 * 174.99394 * 7 5 4 22 22 H 1.07993 * 120.00144 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99635 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00348 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47004 * 5.00742 * 3 2 1 26 26 H 1.08999 * 109.47300 * 245.00413 * 3 2 1 27 27 H 0.96997 * 119.99659 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.58964 * 6.64626 * 8 7 5 29 29 H 1.09006 * 109.58451 * 246.21944 * 8 7 5 30 30 H 1.08998 * 109.49858 * 294.68569 * 9 8 7 31 31 H 1.08994 * 109.52631 * 174.60168 * 9 8 7 32 32 H 1.09005 * 109.46124 * 178.61401 * 10 9 8 33 33 H 1.09005 * 109.45489 * 58.65640 * 10 9 8 34 34 H 0.97001 * 119.99997 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.56983 * 113.76425 * 21 7 5 36 36 H 1.09002 * 109.61922 * 353.32785 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3330 6 8 3.6509 3.3941 0.6324 7 7 4.7062 2.3929 2.3109 8 6 4.7997 1.2549 3.2356 9 6 6.2396 0.7319 3.2297 10 6 7.1972 1.8821 3.5495 11 6 7.0724 2.9655 2.4759 12 1 7.3006 2.5380 1.4995 13 6 8.0390 4.0827 2.7741 14 1 8.6792 4.0257 3.6419 15 6 8.1098 5.1751 1.9358 16 7 7.3301 5.2446 0.8789 17 14 9.3131 6.5563 2.3011 18 1 10.6972 6.0183 2.3070 19 1 9.1938 7.6057 1.2572 20 1 9.0044 7.1432 3.6299 21 6 5.6421 3.5140 2.4724 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1317 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 3.0450 0.5744 1.7352 28 1 4.1226 0.4645 2.9120 29 1 4.5327 1.5787 4.2416 30 1 6.4750 0.3254 2.2461 31 1 6.3462 -0.0500 3.9815 32 1 8.2207 1.5074 3.5702 33 1 6.9455 2.3042 4.5224 34 1 7.3801 6.0129 0.2890 35 1 5.4435 4.0223 3.4160 36 1 5.5212 4.2137 1.6455 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397642797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = -11.132769 kcal Electronic energy + Delta-G solvation = -17323.220073 eV Core-core repulsion = 14614.827540 eV Total energy + Delta-G solvation = -2708.392533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66203 -36.98928 -35.42934 -33.46081 -32.36256 -31.53208 -29.68256 -26.27953 -25.00894 -23.78859 -21.79233 -20.35176 -19.96592 -18.60622 -17.50182 -16.24123 -15.92386 -15.29663 -14.73649 -14.40119 -13.78269 -13.70619 -13.54390 -13.36086 -12.66942 -12.51127 -12.44876 -11.98493 -11.81157 -11.21971 -10.94849 -10.87575 -10.49525 -10.38880 -10.19566 -9.85540 -9.80967 -9.36980 -9.06709 -8.91924 -8.66706 -8.38450 -7.59584 -5.95027 -4.04205 1.97451 3.33883 3.40486 3.41539 3.43702 3.90915 4.43521 4.52091 4.73828 4.99664 5.31604 5.34959 5.51747 5.57266 5.63343 5.74903 5.84611 6.00745 6.18787 6.34199 6.38748 6.50944 6.61963 6.69773 6.84398 6.88693 7.01973 7.10748 7.38612 7.54776 7.78668 7.96803 8.10391 8.44504 8.63861 8.99278 9.30176 9.61240 11.10172 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035365 B = 0.006147 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.543310 B = 4553.919582 C = 5189.170755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.168 4.168 3 C 0.165 3.835 4 N -0.755 5.755 5 C 0.700 3.300 6 O -0.585 6.585 7 N -0.623 5.623 8 C 0.116 3.884 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.129 3.871 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.391 0.609 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.039 0.961 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -11.550 2.191 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.041 3.959 4 N -0.415 5.415 5 C 0.401 3.599 6 O -0.462 6.462 7 N -0.360 5.360 8 C -0.009 4.009 9 C -0.172 4.172 10 C -0.147 4.147 11 C 0.020 3.980 12 H 0.046 0.954 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.008 3.992 22 H 0.118 0.882 23 H 0.118 0.882 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.227 0.773 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.750 -10.656 1.493 14.520 hybrid contribution 0.664 0.242 0.462 0.844 sum -9.086 -10.414 1.955 13.958 Atomic orbital electron populations 1.23923 0.95780 1.02149 0.99385 1.23085 0.96192 0.98413 1.00953 1.20161 0.91427 0.94675 0.89684 1.45302 1.43803 1.20081 1.32333 1.15959 0.79434 0.82970 0.81500 1.90917 1.72259 1.32996 1.50050 1.47786 1.34749 1.22251 1.31170 1.21492 0.97181 0.88494 0.93701 1.21950 0.95312 0.98671 1.01256 1.21613 0.97209 0.95685 1.00231 1.18988 0.92003 0.92883 0.94125 0.95378 1.21041 1.20766 1.03835 1.10467 0.92435 1.25057 0.95720 0.98326 0.94903 1.69888 1.37812 1.30203 1.13793 0.86654 0.81540 0.81811 0.77960 1.20320 1.21271 1.20249 1.22183 0.87466 0.86961 1.02546 0.88203 0.88174 0.86926 0.91510 0.91094 0.77314 0.92153 0.92155 0.92199 0.92363 0.93081 0.93196 0.92598 0.94296 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 14.32 29.02 0.42 -1.09 16 2 C -0.17 -1.68 9.63 -36.02 -0.35 -2.03 16 3 C 0.16 2.27 6.12 -5.19 -0.03 2.24 16 4 N -0.76 -11.88 5.46 -66.41 -0.36 -12.24 16 5 C 0.70 14.87 8.29 -86.93 -0.72 14.15 16 6 O -0.58 -15.17 15.78 5.28 0.08 -15.09 16 7 N -0.62 -12.95 2.97 -178.50 -0.53 -13.48 16 8 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 9 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 10 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 11 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 16 N -0.88 -26.11 11.40 55.43 0.63 -25.47 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 C 0.13 3.22 5.39 -3.71 -0.02 3.20 16 22 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 23 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 24 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.39 4.99 5.92 -40.82 -0.24 4.75 16 28 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.12 3.58 5.17 -51.93 -0.27 3.31 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -32.25 293.56 -7.78 -40.04 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.38 Total: 3.92 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.62 Total: 1.45 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.26 Total: -51.20 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.25 -7.78 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.902 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds