Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00007 * 2 1 4 4 N 1.46507 * 109.47108 * 124.99894 * 3 2 1 5 5 C 1.34773 * 120.00118 * 179.97438 * 4 3 2 6 6 O 1.21593 * 119.99914 * 5.07795 * 5 4 3 7 7 N 1.34770 * 120.00080 * 185.07823 * 5 4 3 8 8 C 1.46927 * 120.62986 * 354.96734 * 7 5 4 9 9 C 1.53188 * 108.77625 * 126.43560 * 8 7 5 10 10 C 1.53045 * 109.31316 * 54.63203 * 9 8 7 11 11 C 1.53035 * 109.53790 * 298.63914 * 10 9 8 12 12 H 1.08996 * 109.49610 * 301.37443 * 11 10 9 13 13 C 1.50707 * 109.49445 * 181.31775 * 11 10 9 14 14 H 1.07993 * 120.00358 * 0.05823 * 13 11 10 15 15 C 1.37880 * 119.99880 * 179.78866 * 13 11 10 16 16 N 1.31515 * 119.99808 * 0.27226 * 15 13 11 17 17 Si 1.86794 * 119.99918 * 180.27337 * 15 13 11 18 18 H 1.48499 * 109.47367 * 60.00016 * 17 15 13 19 19 H 1.48503 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47106 * 299.99556 * 17 15 13 21 21 C 1.46929 * 120.60557 * 174.99394 * 7 5 4 22 22 H 1.07993 * 120.00144 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99635 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00348 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47004 * 5.00742 * 3 2 1 26 26 H 1.08999 * 109.47300 * 245.00413 * 3 2 1 27 27 H 0.96997 * 119.99659 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.58964 * 6.64626 * 8 7 5 29 29 H 1.09006 * 109.58451 * 246.21944 * 8 7 5 30 30 H 1.08998 * 109.49858 * 294.68569 * 9 8 7 31 31 H 1.08994 * 109.52631 * 174.60168 * 9 8 7 32 32 H 1.09005 * 109.46124 * 178.61401 * 10 9 8 33 33 H 1.09005 * 109.45489 * 58.65640 * 10 9 8 34 34 H 0.97001 * 119.99997 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.56983 * 113.76425 * 21 7 5 36 36 H 1.09002 * 109.61922 * 353.32785 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3330 6 8 3.6509 3.3941 0.6324 7 7 4.7062 2.3929 2.3109 8 6 4.7997 1.2549 3.2356 9 6 6.2396 0.7319 3.2297 10 6 7.1972 1.8821 3.5495 11 6 7.0724 2.9655 2.4759 12 1 7.3006 2.5380 1.4995 13 6 8.0390 4.0827 2.7741 14 1 8.6792 4.0257 3.6419 15 6 8.1098 5.1751 1.9358 16 7 7.3301 5.2446 0.8789 17 14 9.3131 6.5563 2.3011 18 1 10.6972 6.0183 2.3070 19 1 9.1938 7.6057 1.2572 20 1 9.0044 7.1432 3.6299 21 6 5.6421 3.5140 2.4724 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1317 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 3.0450 0.5744 1.7352 28 1 4.1226 0.4645 2.9120 29 1 4.5327 1.5787 4.2416 30 1 6.4750 0.3254 2.2461 31 1 6.3462 -0.0500 3.9815 32 1 8.2207 1.5074 3.5702 33 1 6.9455 2.3042 4.5224 34 1 7.3801 6.0129 0.2890 35 1 5.4435 4.0223 3.4160 36 1 5.5212 4.2137 1.6455 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397642797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = -33.052950 kcal Electronic energy + Delta-G solvation = -17324.170603 eV Core-core repulsion = 14614.827540 eV Total energy + Delta-G solvation = -2709.343063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27835 -38.59323 -36.71015 -35.32748 -33.84495 -33.00984 -31.46257 -27.65258 -26.85427 -25.35671 -23.44039 -21.74127 -21.23696 -20.10331 -19.03872 -18.20994 -17.36015 -16.66249 -16.60492 -15.92504 -15.21690 -15.19044 -15.09804 -14.63895 -14.35715 -14.15562 -13.76855 -13.57981 -13.25143 -12.84167 -12.69019 -12.27509 -12.24080 -12.01039 -11.86187 -11.62820 -11.27423 -10.96293 -10.85443 -10.54724 -10.50083 -10.09475 -9.25264 -8.09270 -6.26971 1.16179 1.41748 1.43777 1.52013 1.96690 2.25869 2.43262 3.10998 3.21815 3.87344 4.06641 4.16329 4.19551 4.29388 4.58416 4.60971 4.72892 4.75848 4.81820 4.86905 5.01757 5.11617 5.27585 5.29217 5.33556 5.48303 5.57123 5.64243 5.67001 5.82656 5.90133 5.98535 6.18368 6.36722 6.86342 7.14239 7.43248 7.67541 8.94044 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035365 B = 0.006147 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.543310 B = 4553.919582 C = 5189.170755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.179 4.179 3 C 0.162 3.838 4 N -0.731 5.731 5 C 0.691 3.309 6 O -0.643 6.643 7 N -0.628 5.628 8 C 0.109 3.891 9 C -0.125 4.125 10 C -0.105 4.105 11 C 0.038 3.962 12 H -0.015 1.015 13 C -0.538 4.538 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.143 3.857 22 H 0.097 0.903 23 H 0.128 0.872 24 H 0.133 0.867 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.409 0.591 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.259 0.741 35 H 0.033 0.967 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 -13.966 3.959 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.038 3.962 4 N -0.391 5.391 5 C 0.392 3.608 6 O -0.525 6.525 7 N -0.364 5.364 8 C -0.013 4.013 9 C -0.163 4.163 10 C -0.143 4.143 11 C 0.018 3.982 12 H 0.003 0.997 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.191 1.191 21 C 0.020 3.980 22 H 0.115 0.885 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.248 0.752 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.466 -13.157 3.304 17.134 hybrid contribution 0.813 0.957 -0.099 1.260 sum -9.652 -12.201 3.205 15.884 Atomic orbital electron populations 1.24173 0.95283 1.03376 0.96355 1.22897 0.96448 0.96801 1.03540 1.20265 0.90842 0.96947 0.88115 1.45101 1.42488 1.18749 1.32800 1.16263 0.79966 0.83511 0.81063 1.90872 1.73966 1.35580 1.52097 1.47694 1.33792 1.22752 1.32114 1.21884 0.98115 0.87668 0.93621 1.21908 0.94110 0.98065 1.02246 1.21507 0.98750 0.95526 0.98477 1.18923 0.91567 0.93895 0.93768 0.99674 1.21513 1.21146 1.04573 1.10381 0.91834 1.25927 0.97418 1.01040 0.94676 1.70101 1.39665 1.30752 1.15009 0.85596 0.79516 0.78560 0.77917 1.19201 1.21550 1.19133 1.21590 0.88621 0.87762 1.00072 0.88473 0.85396 0.84939 0.92720 0.92957 0.75170 0.88091 0.90241 0.93151 0.87600 0.92920 0.92387 0.93174 0.94854 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 14.32 67.78 0.97 -1.20 16 2 C -0.18 -3.11 9.63 25.65 0.25 -2.87 16 3 C 0.16 4.41 6.12 85.63 0.52 4.93 16 4 N -0.73 -22.26 5.46 -482.27 -2.63 -24.89 16 5 C 0.69 29.92 8.29 179.06 1.49 31.40 16 6 O -0.64 -35.27 15.78 -4.01 -0.06 -35.33 16 7 N -0.63 -26.15 2.97 -836.91 -2.49 -28.63 16 8 C 0.11 3.11 6.43 86.36 0.56 3.66 16 9 C -0.13 -3.65 6.08 30.67 0.19 -3.46 16 10 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 11 C 0.04 1.95 2.25 -11.46 -0.03 1.93 16 12 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 13 C -0.54 -30.12 8.56 25.60 0.22 -29.90 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.01 0.50 5.31 84.66 0.45 0.95 16 16 N -0.92 -57.21 11.40 21.45 0.24 -56.96 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C 0.14 7.39 5.39 86.36 0.47 7.85 16 22 H 0.10 1.43 7.84 -2.91 -0.02 1.41 16 23 H 0.13 1.17 8.06 -2.91 -0.02 1.14 16 24 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 25 H 0.05 1.61 7.79 -2.38 -0.02 1.59 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.41 9.22 5.92 -92.71 -0.55 8.67 16 28 H 0.10 2.05 5.57 -2.39 -0.01 2.04 16 29 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 4.59 5.17 -2.39 -0.01 4.58 16 Total: -1.00 -76.01 293.56 2.83 -73.18 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.51 Total: 16.30 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.23 Total: 9.39 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.88 Total: -110.49 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.01 2.83 -73.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397642797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.123 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds