Wall clock time and date at job start Sun Mar 29 2020 22:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86796 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47282 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47407 * 119.99879 * 3 2 1 6 6 H 1.48499 * 109.46775 * 239.99686 * 3 2 1 7 7 C 1.40046 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00072 * 4.67305 * 7 2 1 9 9 C 1.46373 * 119.99974 * 184.67659 * 7 2 1 10 10 O 1.21685 * 119.99810 * 6.24767 * 9 7 2 11 11 N 1.34780 * 119.99957 * 186.24811 * 9 7 2 12 12 C 1.46503 * 119.99827 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46903 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.63132 * 308.10370 * 13 12 11 15 15 C 1.55137 * 110.70718 * 71.39902 * 13 12 11 16 16 C 1.54907 * 101.65435 * 154.03291 * 15 13 12 17 17 N 1.47842 * 104.79711 * 322.93258 * 16 15 13 18 18 C 1.46897 * 111.00133 * 146.36073 * 17 16 15 19 19 C 1.53009 * 117.49838 * 122.90474 * 18 17 16 20 20 C 1.53000 * 117.50175 * 54.24720 * 18 17 16 21 21 C 1.47441 * 108.56722 * 24.09319 * 17 16 15 22 22 H 0.97000 * 119.99654 * 174.90231 * 1 2 3 23 23 H 0.96998 * 120.00206 * 359.97438 * 11 9 7 24 24 H 1.09003 * 109.47086 * 299.99731 * 12 11 9 25 25 H 1.08999 * 109.47033 * 59.99454 * 12 11 9 26 26 H 1.09000 * 110.99234 * 272.12578 * 15 13 12 27 27 H 1.09003 * 110.99161 * 35.94355 * 15 13 12 28 28 H 1.08997 * 110.37696 * 204.10379 * 16 15 13 29 29 H 1.09003 * 110.37098 * 81.76024 * 16 15 13 30 30 H 1.09004 * 115.55016 * 268.57008 * 18 17 16 31 31 H 1.08999 * 117.49857 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49658 * 145.02133 * 19 18 17 33 33 H 1.09001 * 117.49975 * 214.98337 * 20 18 17 34 34 H 1.09004 * 117.49269 * 359.96888 * 20 18 17 35 35 H 1.09002 * 109.88772 * 239.60682 * 21 17 16 36 36 H 1.08997 * 110.02860 * 118.49525 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6965 1.2124 6 1 3.0945 1.6963 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2149 0.1039 10 8 4.0643 -0.1736 0.3034 11 7 4.1500 -2.3700 -0.0219 12 6 5.6113 -2.3721 0.0821 13 6 6.1331 -3.7993 -0.0957 14 1 5.6175 -4.4835 0.5782 15 6 5.9832 -4.2586 -1.5699 16 6 7.1052 -5.3207 -1.6825 17 7 8.2159 -4.7844 -0.8673 18 6 8.9638 -5.8692 -0.2179 19 6 10.4655 -5.9581 -0.4979 20 6 9.5100 -6.9844 -1.1118 21 6 7.6584 -3.8550 0.1323 22 1 -0.4849 -0.8367 -0.0746 23 1 3.6739 -3.2001 -0.1806 24 1 6.0317 -1.7319 -0.6935 25 1 5.9063 -1.9971 1.0621 26 1 5.0039 -4.7054 -1.7420 27 1 6.1590 -3.4306 -2.2567 28 1 7.4171 -5.4347 -2.7206 29 1 6.7658 -6.2753 -1.2803 30 1 8.6205 -6.1458 0.7790 31 1 10.8984 -5.2114 -1.1635 32 1 11.1098 -6.2936 0.3147 33 1 9.5262 -7.9947 -0.7029 34 1 9.3138 -6.9134 -2.1816 35 1 8.0899 -2.8631 -0.0024 36 1 7.8700 -4.2177 1.1382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408308807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:43 Heat of formation + Delta-G solvation = -30.576642 kcal Electronic energy + Delta-G solvation = -16723.681104 eV Core-core repulsion = 14014.445422 eV Total energy + Delta-G solvation = -2709.235682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58513 -37.84411 -36.33412 -33.57346 -32.80186 -30.27775 -29.40991 -26.52934 -24.13423 -22.82149 -22.20545 -20.46653 -20.20131 -19.72230 -17.94147 -16.67939 -16.22313 -15.35881 -14.85336 -14.39804 -14.19535 -13.75616 -13.55299 -13.36364 -13.01971 -12.63146 -12.30902 -12.05536 -11.91681 -11.71462 -11.67278 -11.17117 -10.73769 -10.68329 -10.54988 -10.34349 -10.27031 -10.16374 -9.19351 -8.95329 -8.44788 -7.91994 -7.88705 -6.97153 -4.90900 3.51915 3.60975 3.70055 3.72051 4.09469 4.36116 4.38403 4.58233 4.61180 4.69387 4.72408 4.82559 4.92036 5.16998 5.27154 5.35867 5.41743 5.43741 5.48523 5.55066 5.61517 5.74207 5.80350 5.94318 5.95346 6.02877 6.16200 6.31566 6.45223 6.79732 6.99070 7.51100 7.71281 7.77316 8.12294 8.85705 9.09344 10.08743 10.35263 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063558 B = 0.004414 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.434608 B = 6342.183506 C = 6582.997068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.060 3.940 3 Si 1.132 2.868 4 H -0.323 1.323 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.599 4.599 8 H 0.069 0.931 9 C 0.551 3.449 10 O -0.619 6.619 11 N -0.756 5.756 12 C 0.141 3.859 13 C -0.120 4.120 14 H 0.077 0.923 15 C -0.123 4.123 16 C 0.045 3.955 17 N -0.503 5.503 18 C 0.001 3.999 19 C -0.164 4.164 20 C -0.179 4.179 21 C 0.054 3.946 22 H 0.277 0.723 23 H 0.386 0.614 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.584 -13.880 -1.908 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.157 4.157 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.512 6.512 11 N -0.407 5.407 12 C 0.016 3.984 13 C -0.140 4.140 14 H 0.096 0.904 15 C -0.161 4.161 16 C -0.082 4.082 17 N -0.227 5.227 18 C -0.108 4.108 19 C -0.202 4.202 20 C -0.216 4.216 21 C -0.074 4.074 22 H 0.087 0.913 23 H 0.218 0.782 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.121 -11.377 -2.024 19.835 hybrid contribution -0.667 -2.920 0.411 3.023 sum 15.453 -14.297 -1.613 21.114 Atomic orbital electron populations 1.70661 1.07612 1.31932 1.36053 1.27170 0.95325 1.05042 0.88211 0.82357 0.71347 0.70710 0.79133 1.25483 1.20827 1.21890 1.22044 0.90023 0.96262 1.55255 0.91309 1.18445 0.88665 0.81394 0.75548 1.90142 1.70753 1.31301 1.58992 1.45734 1.04883 1.10725 1.79389 1.20937 0.83099 0.93446 1.00935 1.22642 0.95941 0.98129 0.97254 0.90435 1.22786 0.98199 0.98774 0.96360 1.23013 0.90093 0.96849 0.98207 1.63390 1.23795 1.14230 1.21237 1.22696 0.95863 0.95044 0.97225 1.23065 0.92106 1.01789 1.03248 1.23056 1.04584 0.94313 0.99654 1.22815 0.92868 0.97773 0.93970 0.91277 0.78233 0.92531 0.92928 0.90622 0.90188 0.90458 0.93451 0.89197 0.88169 0.88933 0.88875 0.88438 0.89797 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.46 13.65 55.55 0.76 -23.70 16 2 C 0.06 1.75 5.52 -17.36 -0.10 1.66 16 3 Si 1.13 30.44 25.99 -169.99 -4.42 26.02 16 4 H -0.32 -8.34 7.11 56.52 0.40 -7.93 16 5 H -0.28 -7.79 6.78 56.52 0.38 -7.41 16 6 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 7 C -0.60 -17.16 9.96 -35.63 -0.36 -17.52 16 8 H 0.07 1.93 8.05 -52.49 -0.42 1.51 16 9 C 0.55 14.87 7.57 -12.99 -0.10 14.77 16 10 O -0.62 -18.13 12.07 5.20 0.06 -18.07 16 11 N -0.76 -16.00 5.47 -61.72 -0.34 -16.34 16 12 C 0.14 2.50 4.97 -4.04 -0.02 2.48 16 13 C -0.12 -1.60 2.96 -88.80 -0.26 -1.86 16 14 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.12 -1.53 6.44 -24.59 -0.16 -1.69 16 16 C 0.05 0.50 6.02 -2.30 -0.01 0.48 16 17 N -0.50 -5.83 5.34 -223.29 -1.19 -7.02 16 18 C 0.00 0.01 5.07 -67.71 -0.34 -0.33 16 19 C -0.16 -1.43 10.46 -26.69 -0.28 -1.71 16 20 C -0.18 -1.50 9.83 -26.69 -0.26 -1.76 16 21 C 0.05 0.65 6.49 -2.84 -0.02 0.64 16 22 H 0.28 7.76 8.72 -40.82 -0.36 7.41 16 23 H 0.39 7.28 8.45 -40.82 -0.34 6.94 16 24 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.09 7.94 -51.93 -0.41 0.67 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.84 7.95 -51.93 -0.41 0.42 16 35 H 0.08 1.07 7.82 -51.93 -0.41 0.67 16 36 H 0.06 0.64 7.31 -51.93 -0.38 0.26 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -31.89 295.48 -8.31 -40.20 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.73 Total: -0.71 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.91 Total: -4.83 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.77 Total: -47.06 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.06 Total: -18.07 kcal Atomic # 14 Polarization: 30.44 SS G_CDS: -4.42 Total: 26.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.89 -8.31 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408308807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.619 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds