Wall clock time and date at job start Sun Mar 29 2020 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86796 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47282 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47407 * 119.99879 * 3 2 1 6 6 H 1.48499 * 109.46775 * 239.99686 * 3 2 1 7 7 C 1.40046 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00072 * 4.67305 * 7 2 1 9 9 C 1.46373 * 119.99974 * 184.67659 * 7 2 1 10 10 O 1.21685 * 119.99810 * 6.24767 * 9 7 2 11 11 N 1.34780 * 119.99957 * 186.24811 * 9 7 2 12 12 C 1.46503 * 119.99827 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46903 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.63132 * 308.10370 * 13 12 11 15 15 C 1.55137 * 110.70718 * 71.39902 * 13 12 11 16 16 C 1.54907 * 101.65435 * 154.03291 * 15 13 12 17 17 N 1.47842 * 104.79711 * 322.93258 * 16 15 13 18 18 C 1.46897 * 111.00133 * 146.36073 * 17 16 15 19 19 C 1.53009 * 117.49838 * 122.90474 * 18 17 16 20 20 C 1.53000 * 117.50175 * 54.24720 * 18 17 16 21 21 C 1.47441 * 108.56722 * 24.09319 * 17 16 15 22 22 H 0.97000 * 119.99654 * 174.90231 * 1 2 3 23 23 H 0.96998 * 120.00206 * 359.97438 * 11 9 7 24 24 H 1.09003 * 109.47086 * 299.99731 * 12 11 9 25 25 H 1.08999 * 109.47033 * 59.99454 * 12 11 9 26 26 H 1.09000 * 110.99234 * 272.12578 * 15 13 12 27 27 H 1.09003 * 110.99161 * 35.94355 * 15 13 12 28 28 H 1.08997 * 110.37696 * 204.10379 * 16 15 13 29 29 H 1.09003 * 110.37098 * 81.76024 * 16 15 13 30 30 H 1.09004 * 115.55016 * 268.57008 * 18 17 16 31 31 H 1.08999 * 117.49857 * 0.02562 * 19 18 17 32 32 H 1.08995 * 117.49658 * 145.02133 * 19 18 17 33 33 H 1.09001 * 117.49975 * 214.98337 * 20 18 17 34 34 H 1.09004 * 117.49269 * 359.96888 * 20 18 17 35 35 H 1.09002 * 109.88772 * 239.60682 * 21 17 16 36 36 H 1.08997 * 110.02860 * 118.49525 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6965 1.2124 6 1 3.0945 1.6963 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2149 0.1039 10 8 4.0643 -0.1736 0.3034 11 7 4.1500 -2.3700 -0.0219 12 6 5.6113 -2.3721 0.0821 13 6 6.1331 -3.7993 -0.0957 14 1 5.6175 -4.4835 0.5782 15 6 5.9832 -4.2586 -1.5699 16 6 7.1052 -5.3207 -1.6825 17 7 8.2159 -4.7844 -0.8673 18 6 8.9638 -5.8692 -0.2179 19 6 10.4655 -5.9581 -0.4979 20 6 9.5100 -6.9844 -1.1118 21 6 7.6584 -3.8550 0.1323 22 1 -0.4849 -0.8367 -0.0746 23 1 3.6739 -3.2001 -0.1806 24 1 6.0317 -1.7319 -0.6935 25 1 5.9063 -1.9971 1.0621 26 1 5.0039 -4.7054 -1.7420 27 1 6.1590 -3.4306 -2.2567 28 1 7.4171 -5.4347 -2.7206 29 1 6.7658 -6.2753 -1.2803 30 1 8.6205 -6.1458 0.7790 31 1 10.8984 -5.2114 -1.1635 32 1 11.1098 -6.2936 0.3147 33 1 9.5262 -7.9947 -0.7029 34 1 9.3138 -6.9134 -2.1816 35 1 8.0899 -2.8631 -0.0024 36 1 7.8700 -4.2177 1.1382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408308807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:42 Heat of formation + Delta-G solvation = -53.705322 kcal Electronic energy + Delta-G solvation = -16724.684039 eV Core-core repulsion = 14014.445422 eV Total energy + Delta-G solvation = -2710.238617 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62760 -39.69693 -37.34452 -35.27713 -34.92994 -31.57958 -30.40145 -28.48314 -25.65331 -23.59037 -22.99031 -21.82982 -21.42655 -21.15081 -20.02844 -17.63575 -17.41558 -17.17899 -16.33914 -15.91570 -15.76953 -15.12488 -14.85523 -14.61405 -14.47762 -14.20233 -14.10156 -13.52988 -13.00611 -12.80329 -12.59350 -12.39438 -12.32646 -12.16473 -11.83769 -11.69053 -11.36836 -11.29262 -11.19964 -11.03232 -10.11379 -9.75769 -9.30246 -9.20218 -7.15155 1.43079 1.54607 1.96903 2.20379 2.40414 2.77958 2.81997 2.99413 3.28291 3.58325 3.65118 3.85160 4.02436 4.11726 4.25604 4.35606 4.39033 4.42487 4.50023 4.72916 4.76258 4.80359 4.89460 4.92474 5.02022 5.06122 5.14040 5.27687 5.31424 5.44217 5.51278 5.87514 5.90761 6.00796 6.17293 6.62816 7.14822 7.98581 8.10664 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063558 B = 0.004414 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.434608 B = 6342.183506 C = 6582.997068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.028 3.972 3 Si 1.163 2.837 4 H -0.306 1.306 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.617 4.617 8 H 0.067 0.933 9 C 0.548 3.452 10 O -0.644 6.644 11 N -0.740 5.740 12 C 0.143 3.857 13 C -0.108 4.108 14 H 0.088 0.912 15 C -0.123 4.123 16 C 0.052 3.948 17 N -0.513 5.513 18 C -0.016 4.016 19 C -0.163 4.163 20 C -0.168 4.168 21 C 0.058 3.942 22 H 0.278 0.722 23 H 0.399 0.601 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.730 -15.419 -1.968 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.186 4.186 3 Si 0.994 3.006 4 H -0.237 1.237 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.653 4.653 8 H 0.085 0.915 9 C 0.353 3.647 10 O -0.539 6.539 11 N -0.391 5.391 12 C 0.018 3.982 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.161 4.161 16 C -0.075 4.075 17 N -0.237 5.237 18 C -0.125 4.125 19 C -0.201 4.201 20 C -0.205 4.205 21 C -0.070 4.070 22 H 0.088 0.912 23 H 0.233 0.767 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.265 -12.961 -2.096 21.690 hybrid contribution -0.959 -2.512 0.425 2.723 sum 16.306 -15.473 -1.671 22.541 Atomic orbital electron populations 1.70664 1.07781 1.32158 1.37111 1.27810 0.95722 1.06832 0.88252 0.81930 0.70665 0.69887 0.78091 1.23687 1.22424 1.22347 1.22233 0.91267 0.96155 1.55688 0.91474 1.18362 0.88499 0.82467 0.75326 1.90124 1.71196 1.32667 1.59915 1.45489 1.06460 1.09673 1.77445 1.21056 0.80679 0.96387 1.00052 1.22517 0.96827 0.95121 0.98302 0.89365 1.22769 0.99306 0.98871 0.95155 1.22980 0.89277 0.96559 0.98662 1.63378 1.23978 1.15088 1.21283 1.22791 0.96419 0.95461 0.97806 1.23113 0.91666 1.01739 1.03567 1.23116 1.03346 0.94709 0.99335 1.22726 0.91623 0.97777 0.94870 0.91152 0.76687 0.93768 0.93688 0.89982 0.91672 0.89804 0.92368 0.88729 0.89083 0.87462 0.87249 0.88682 0.90855 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.42 13.65 21.84 0.30 -49.12 16 2 C 0.03 1.64 5.52 85.30 0.47 2.11 16 3 Si 1.16 61.66 25.99 68.60 1.78 63.45 16 4 H -0.31 -15.21 7.11 99.48 0.71 -14.51 16 5 H -0.30 -16.33 6.78 99.48 0.67 -15.66 16 6 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 7 C -0.62 -35.16 9.96 24.83 0.25 -34.91 16 8 H 0.07 3.76 8.05 -2.91 -0.02 3.73 16 9 C 0.55 29.30 7.57 86.36 0.65 29.95 16 10 O -0.64 -37.62 12.07 -4.30 -0.05 -37.68 16 11 N -0.74 -30.60 5.47 -467.40 -2.56 -33.15 16 12 C 0.14 4.94 4.97 86.38 0.43 5.37 16 13 C -0.11 -2.69 2.96 -9.61 -0.03 -2.72 16 14 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.12 -2.83 6.44 31.98 0.21 -2.63 16 16 C 0.05 1.02 6.02 86.77 0.52 1.54 16 17 N -0.51 -10.87 5.34 -860.36 -4.59 -15.47 16 18 C -0.02 -0.28 5.07 44.92 0.23 -0.05 16 19 C -0.16 -2.47 10.46 30.62 0.32 -2.15 16 20 C -0.17 -2.35 9.83 30.62 0.30 -2.05 16 21 C 0.06 1.32 6.49 86.65 0.56 1.88 16 22 H 0.28 15.56 8.72 -92.71 -0.81 14.75 16 23 H 0.40 14.45 8.45 -92.71 -0.78 13.66 16 24 H 0.04 1.66 8.00 -2.39 -0.02 1.64 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.70 7.94 -2.39 -0.02 1.69 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.03 7.79 -2.39 -0.02 1.01 16 30 H 0.10 1.57 7.67 -2.39 -0.02 1.55 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.39 7.95 -2.39 -0.02 1.37 16 35 H 0.07 1.81 7.82 -2.39 -0.02 1.79 16 36 H 0.07 1.39 7.31 -2.39 -0.02 1.38 16 Total: -1.00 -66.31 295.48 -1.00 -67.32 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.21 Total: 8.30 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 3.91 Total: -3.64 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -6.85 Total: -97.74 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.05 Total: -37.68 kcal Atomic # 14 Polarization: 61.66 SS G_CDS: 1.78 Total: 63.45 kcal Total: -66.31 -1.00 -67.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408308807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.610 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds