Wall clock time and date at job start Sun Mar 29 2020 21:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99705 * 2 1 4 4 H 1.48508 * 109.46874 * 240.00259 * 3 2 1 5 5 H 1.48492 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47109 * 120.00407 * 3 2 1 7 7 C 1.37874 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99668 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99848 * 179.97438 * 11 10 9 14 14 H 1.08998 * 110.59144 * 61.55899 * 13 11 10 15 15 C 1.54933 * 110.66944 * 298.55328 * 13 11 10 16 16 C 1.54594 * 102.91997 * 203.98409 * 15 13 11 17 17 C 1.53991 * 105.14285 * 21.95481 * 16 15 13 18 18 N 1.47905 * 107.22505 * 1.12969 * 17 16 15 19 19 C 1.46897 * 111.00050 * 214.25344 * 18 17 16 20 20 C 1.53003 * 117.49923 * 128.61926 * 19 18 17 21 21 C 1.53000 * 117.49855 * 59.96050 * 19 18 17 22 22 H 0.96995 * 120.00123 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46678 * 60.00291 * 9 7 2 24 24 H 1.08994 * 109.47073 * 300.00264 * 9 7 2 25 25 H 0.96996 * 120.00064 * 0.02562 * 10 9 7 26 26 H 1.08999 * 110.72416 * 85.62272 * 15 13 11 27 27 H 1.08998 * 110.87653 * 322.41302 * 15 13 11 28 28 H 1.09005 * 110.30718 * 263.04287 * 16 15 13 29 29 H 1.09001 * 110.39460 * 140.91666 * 16 15 13 30 30 H 1.09002 * 109.91707 * 120.58029 * 17 16 15 31 31 H 1.09002 * 109.91668 * 241.67819 * 17 16 15 32 32 H 1.09000 * 115.55159 * 274.29222 * 19 18 17 33 33 H 1.08998 * 117.49742 * 359.97438 * 20 19 18 34 34 H 1.08995 * 117.49945 * 145.02103 * 20 19 18 35 35 H 1.09005 * 117.49921 * 214.97922 * 21 19 18 36 36 H 1.09004 * 117.50081 * 359.97333 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0015 12 8 0.5616 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 1 3.3531 -6.0046 0.8929 15 6 3.6133 -5.9937 -1.2780 16 6 4.0615 -7.4656 -1.4291 17 6 3.0185 -8.2859 -0.6477 18 7 2.0233 -7.3321 -0.1116 19 6 1.5222 -7.7740 1.1967 20 6 1.5579 -6.7634 2.3449 21 6 2.5419 -7.9357 2.3258 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 3.1568 -3.4353 -0.0021 26 1 4.4744 -5.3411 -1.1343 27 1 3.0312 -5.6770 -2.1433 28 1 5.0529 -7.6053 -0.9980 29 1 4.0620 -7.7565 -2.4795 30 1 2.5300 -8.9967 -1.3143 31 1 3.5023 -8.8176 0.1717 32 1 0.6875 -8.4743 1.1683 33 1 1.9535 -5.7708 2.1296 34 1 0.7467 -6.7991 3.0721 35 1 2.3778 -8.7422 3.0406 36 1 3.5847 -7.7147 2.0978 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408370604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:39 Heat of formation + Delta-G solvation = -3.049637 kcal Electronic energy + Delta-G solvation = -17347.608048 eV Core-core repulsion = 14639.566026 eV Total energy + Delta-G solvation = -2708.042022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26693 -37.76767 -35.60214 -34.07738 -32.29879 -30.06073 -29.54386 -26.93745 -23.68111 -22.51702 -22.43570 -20.87942 -20.29931 -19.08913 -17.30140 -16.88035 -15.82367 -15.31293 -14.93922 -14.65900 -14.24314 -13.83370 -13.48471 -13.30202 -12.58636 -12.58253 -12.03381 -11.86524 -11.70957 -11.48853 -11.35360 -11.20977 -10.96952 -10.84318 -10.74704 -10.45239 -10.29005 -10.02787 -9.38408 -8.93337 -8.70020 -8.21289 -7.80800 -6.14340 -4.21309 3.26180 3.30934 3.32392 3.42560 3.67174 3.85614 4.29027 4.46300 4.54740 4.73699 4.86344 4.96420 5.02231 5.06332 5.20842 5.22352 5.39371 5.56725 5.64775 5.71083 5.79589 5.83334 5.94899 6.02932 6.09112 6.16178 6.22391 6.82514 7.09983 7.35918 7.50524 7.56120 7.70946 8.00184 8.68618 8.83011 9.19498 9.45712 10.95830 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.005651 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.032213 B = 4953.472761 C = 5291.493400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.253 3.747 10 N -0.716 5.716 11 C 0.508 3.492 12 O -0.530 6.530 13 C 0.038 3.962 14 H 0.075 0.925 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.035 3.965 18 N -0.462 5.462 19 C 0.028 3.972 20 C -0.171 4.171 21 C -0.224 4.224 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.388 0.612 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -14.734 0.955 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.366 5.366 11 C 0.291 3.709 12 O -0.407 6.407 13 C -0.073 4.073 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.092 4.092 18 N -0.184 5.184 19 C -0.081 4.081 20 C -0.208 4.208 21 C -0.263 4.263 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.220 0.780 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.874 -14.712 0.596 16.698 hybrid contribution 1.547 0.989 0.663 1.952 sum 9.421 -13.724 1.258 16.694 Atomic orbital electron populations 1.69966 1.06101 1.27374 1.48852 1.24947 0.94897 0.99397 0.94739 0.86486 0.79423 0.82399 0.78658 1.20070 1.21070 1.20111 1.21193 0.93192 0.90513 1.53253 0.92016 1.19060 0.88253 0.81844 0.97644 1.46435 1.10918 1.05961 1.73237 1.19961 0.89246 0.83676 0.77969 1.90666 1.16340 1.84521 1.49124 1.22923 0.94316 0.91013 0.99076 0.90708 1.22455 0.98834 0.96725 0.97299 1.22411 0.98261 0.94969 1.01137 1.22901 0.92366 0.95394 0.98547 1.64493 1.32007 1.00454 1.21458 1.22842 0.99691 1.02023 0.83558 1.23248 1.01707 0.95068 1.00814 1.23482 0.96551 1.01998 1.04260 0.92410 0.95605 0.95678 0.78021 0.90218 0.89937 0.91385 0.90675 0.90117 0.93234 0.85733 0.88380 0.88266 0.88615 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.75 16 10 N -0.72 -15.29 5.49 -61.47 -0.34 -15.62 16 11 C 0.51 10.46 5.49 -10.98 -0.06 10.40 16 12 O -0.53 -13.19 15.80 5.56 0.09 -13.10 16 13 C 0.04 0.59 2.05 -66.78 -0.14 0.46 16 14 H 0.08 1.06 5.77 -51.93 -0.30 0.76 16 15 C -0.11 -1.46 6.44 -24.87 -0.16 -1.62 16 16 C -0.13 -1.32 6.93 -25.38 -0.18 -1.50 16 17 C 0.04 0.40 6.58 -2.75 -0.02 0.39 16 18 N -0.46 -6.99 4.86 -215.85 -1.05 -8.04 16 19 C 0.03 0.40 6.00 -67.71 -0.41 -0.01 16 20 C -0.17 -2.52 8.89 -26.69 -0.24 -2.75 16 21 C -0.22 -2.60 8.86 -26.69 -0.24 -2.84 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.39 7.11 8.31 -40.82 -0.34 6.78 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.51 6.72 -51.93 -0.35 0.16 16 32 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 33 H 0.10 1.65 5.07 -51.93 -0.26 1.39 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.00 7.20 -51.93 -0.37 0.63 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -32.16 292.02 -8.44 -40.60 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.38 Total: 5.61 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.88 Total: -4.18 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.65 Total: -49.21 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.16 -8.44 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408370604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.548 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds