Wall clock time and date at job start Sun Mar 29 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99705 * 2 1 4 4 H 1.48508 * 109.46874 * 240.00259 * 3 2 1 5 5 H 1.48492 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47109 * 120.00407 * 3 2 1 7 7 C 1.37874 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99668 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99848 * 179.97438 * 11 10 9 14 14 H 1.08998 * 110.59144 * 61.55899 * 13 11 10 15 15 C 1.54933 * 110.66944 * 298.55328 * 13 11 10 16 16 C 1.54594 * 102.91997 * 203.98409 * 15 13 11 17 17 C 1.53991 * 105.14285 * 21.95481 * 16 15 13 18 18 N 1.47905 * 107.22505 * 1.12969 * 17 16 15 19 19 C 1.46897 * 111.00050 * 214.25344 * 18 17 16 20 20 C 1.53003 * 117.49923 * 128.61926 * 19 18 17 21 21 C 1.53000 * 117.49855 * 59.96050 * 19 18 17 22 22 H 0.96995 * 120.00123 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46678 * 60.00291 * 9 7 2 24 24 H 1.08994 * 109.47073 * 300.00264 * 9 7 2 25 25 H 0.96996 * 120.00064 * 0.02562 * 10 9 7 26 26 H 1.08999 * 110.72416 * 85.62272 * 15 13 11 27 27 H 1.08998 * 110.87653 * 322.41302 * 15 13 11 28 28 H 1.09005 * 110.30718 * 263.04287 * 16 15 13 29 29 H 1.09001 * 110.39460 * 140.91666 * 16 15 13 30 30 H 1.09002 * 109.91707 * 120.58029 * 17 16 15 31 31 H 1.09002 * 109.91668 * 241.67819 * 17 16 15 32 32 H 1.09000 * 115.55159 * 274.29222 * 19 18 17 33 33 H 1.08998 * 117.49742 * 359.97438 * 20 19 18 34 34 H 1.08995 * 117.49945 * 145.02103 * 20 19 18 35 35 H 1.09005 * 117.49921 * 214.97922 * 21 19 18 36 36 H 1.09004 * 117.50081 * 359.97333 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0015 12 8 0.5616 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 1 3.3531 -6.0046 0.8929 15 6 3.6133 -5.9937 -1.2780 16 6 4.0615 -7.4656 -1.4291 17 6 3.0185 -8.2859 -0.6477 18 7 2.0233 -7.3321 -0.1116 19 6 1.5222 -7.7740 1.1967 20 6 1.5579 -6.7634 2.3449 21 6 2.5419 -7.9357 2.3258 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 3.1568 -3.4353 -0.0021 26 1 4.4744 -5.3411 -1.1343 27 1 3.0312 -5.6770 -2.1433 28 1 5.0529 -7.6053 -0.9980 29 1 4.0620 -7.7565 -2.4795 30 1 2.5300 -8.9967 -1.3143 31 1 3.5023 -8.8176 0.1717 32 1 0.6875 -8.4743 1.1683 33 1 1.9535 -5.7708 2.1296 34 1 0.7467 -6.7991 3.0721 35 1 2.3778 -8.7422 3.0406 36 1 3.5847 -7.7147 2.0978 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408370604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:38 Heat of formation + Delta-G solvation = -27.191890 kcal Electronic energy + Delta-G solvation = -17348.654935 eV Core-core repulsion = 14639.566026 eV Total energy + Delta-G solvation = -2709.088908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53709 -39.33858 -36.62276 -36.07701 -34.33352 -31.21000 -30.76013 -28.84173 -25.21545 -24.07169 -23.51023 -22.12203 -21.49947 -20.59720 -18.90711 -18.12045 -17.58067 -17.00101 -16.32102 -16.07949 -15.82191 -15.34897 -14.80071 -14.35314 -14.16014 -13.99010 -13.83387 -13.51979 -12.95554 -12.74065 -12.69753 -12.57079 -12.48887 -12.23220 -12.18748 -11.78324 -11.51301 -11.36304 -11.06760 -10.78957 -10.61834 -9.80716 -9.29562 -8.28959 -6.46205 1.42716 1.47203 1.55424 1.79715 2.25428 2.45113 2.79438 3.05578 3.10113 3.51523 3.63857 3.88633 3.90763 3.99927 4.05632 4.15311 4.27772 4.53866 4.65725 4.78291 4.88216 4.91886 5.00165 5.03548 5.09513 5.11350 5.16091 5.23681 5.29153 5.48992 5.67086 5.83138 5.85471 6.08997 6.64703 6.95415 7.23569 7.53886 8.83178 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.005651 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.032213 B = 4953.472761 C = 5291.493400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.271 3.729 10 N -0.709 5.709 11 C 0.505 3.495 12 O -0.581 6.581 13 C 0.051 3.949 14 H 0.094 0.906 15 C -0.116 4.116 16 C -0.119 4.119 17 C 0.034 3.966 18 N -0.493 5.493 19 C 0.014 3.986 20 C -0.201 4.201 21 C -0.182 4.182 22 H 0.269 0.731 23 H -0.016 1.016 24 H -0.016 1.016 25 H 0.405 0.595 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 -15.549 1.029 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.148 3.852 10 N -0.360 5.360 11 C 0.292 3.708 12 O -0.460 6.460 13 C -0.061 4.061 14 H 0.112 0.888 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.092 4.092 18 N -0.216 5.216 19 C -0.095 4.095 20 C -0.239 4.239 21 C -0.221 4.221 22 H 0.077 0.923 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.241 0.759 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.348 -15.566 0.666 19.275 hybrid contribution 0.388 1.173 0.642 1.393 sum 11.737 -14.392 1.309 18.617 Atomic orbital electron populations 1.70142 1.08359 1.28638 1.49924 1.26092 0.95762 1.03973 0.93789 0.85193 0.77902 0.76482 0.79553 1.18535 1.21101 1.18602 1.21587 0.94299 0.90524 1.53013 0.89762 1.18477 0.88618 0.84337 0.93759 1.46163 1.10967 1.05382 1.73510 1.21013 0.89668 0.84435 0.75720 1.90631 1.19073 1.85268 1.51066 1.22776 0.92934 0.89022 1.01367 0.88822 1.22523 0.98685 0.99484 0.94703 1.22422 0.99032 0.92198 1.02073 1.23012 0.92033 0.94895 0.99276 1.64391 1.33818 1.01028 1.22355 1.22915 1.01184 1.01737 0.83701 1.23197 1.03637 0.94904 1.02118 1.23524 0.96132 1.00064 1.02332 0.92252 0.99843 0.99798 0.75930 0.87860 0.92253 0.88545 0.89466 0.89695 0.91317 0.85680 0.91047 0.88629 0.86199 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 15.34 5.43 85.63 0.46 15.80 16 10 N -0.71 -31.21 5.49 -466.79 -2.56 -33.78 16 11 C 0.51 21.51 5.49 87.66 0.48 22.00 16 12 O -0.58 -30.68 15.80 -3.02 -0.05 -30.72 16 13 C 0.05 1.51 2.05 44.46 0.09 1.60 16 14 H 0.09 2.46 5.77 -2.39 -0.01 2.45 16 15 C -0.12 -2.69 6.44 31.80 0.20 -2.49 16 16 C -0.12 -1.98 6.93 31.47 0.22 -1.76 16 17 C 0.03 0.68 6.58 86.44 0.57 1.25 16 18 N -0.49 -14.39 4.86 -836.81 -4.07 -18.46 16 19 C 0.01 0.38 6.00 44.92 0.27 0.65 16 20 C -0.20 -5.94 8.89 30.62 0.27 -5.67 16 21 C -0.18 -3.72 8.86 30.62 0.27 -3.45 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H 0.41 14.73 8.31 -92.71 -0.77 13.95 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 28 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.10 6.72 -2.39 -0.02 1.09 16 32 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.07 2.48 5.07 -2.39 -0.01 2.47 16 34 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.12 1.91 8.14 -2.38 -0.02 1.90 16 36 H 0.10 1.87 7.20 -2.39 -0.02 1.85 16 Total: -1.00 -74.18 292.02 -0.53 -74.70 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.30 Total: 22.48 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 3.54 Total: -1.93 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -6.35 Total: -109.14 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.18 -0.53 -74.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408370604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds