Wall clock time and date at job start Sun Mar 29 2020 21:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47340 * 300.00192 * 3 2 1 6 6 H 1.48498 * 109.46961 * 60.00143 * 3 2 1 7 7 C 1.37878 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99871 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00184 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99944 * 180.02562 * 11 10 9 14 14 H 1.09002 * 110.33360 * 300.69984 * 13 11 10 15 15 C 1.54902 * 110.46875 * 63.01851 * 13 11 10 16 16 C 1.55145 * 101.65579 * 155.94535 * 15 13 11 17 17 C 1.54317 * 103.01547 * 324.34887 * 16 15 13 18 18 N 1.47440 * 107.23634 * 22.28209 * 17 16 15 19 19 C 1.46897 * 111.00101 * 123.26048 * 18 17 16 20 20 C 1.52995 * 117.50247 * 127.90309 * 19 18 17 21 21 C 1.52996 * 117.50118 * 59.24189 * 19 18 17 22 22 H 0.97000 * 120.00290 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47224 * 59.99928 * 9 7 2 24 24 H 1.09003 * 109.47487 * 300.00303 * 9 7 2 25 25 H 0.96995 * 120.00203 * 0.02562 * 10 9 7 26 26 H 1.09002 * 110.99026 * 274.03814 * 15 13 11 27 27 H 1.09006 * 110.99318 * 37.85245 * 15 13 11 28 28 H 1.08995 * 110.70454 * 205.96138 * 16 15 13 29 29 H 1.09000 * 110.85257 * 82.79805 * 16 15 13 30 30 H 1.09004 * 109.88612 * 262.87056 * 17 16 15 31 31 H 1.08999 * 110.01995 * 141.76136 * 17 16 15 32 32 H 1.09002 * 115.54622 * 273.56950 * 19 18 17 33 33 H 1.09009 * 117.49741 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.50354 * 145.01688 * 20 19 18 35 35 H 1.09005 * 117.49844 * 214.98141 * 21 19 18 36 36 H 1.08997 * 117.49725 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0009 13 6 2.7331 -6.0288 0.0006 14 1 3.3759 -5.9780 -0.8782 15 6 3.5854 -6.0121 1.2939 16 6 4.0158 -7.4985 1.4049 17 6 2.7792 -8.2584 0.8806 18 7 2.0145 -7.3203 0.0386 19 6 1.8286 -7.8595 -1.3151 20 6 0.4036 -7.8985 -1.8706 21 6 1.0968 -9.1964 -1.4488 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 4.4529 -5.3618 1.1814 27 1 2.9849 -5.7142 2.1535 28 1 4.2204 -7.7641 2.4420 29 1 4.8852 -7.6985 0.7786 30 1 2.1654 -8.5902 1.7180 31 1 3.0929 -9.1176 0.2877 32 1 2.6370 -7.6558 -2.0173 33 1 -0.3962 -7.5245 -1.2312 34 1 0.2744 -7.7209 -2.9383 35 1 1.4236 -9.8722 -2.2392 36 1 0.7537 -9.6761 -0.5322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408370605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:41 Heat of formation + Delta-G solvation = -9.061711 kcal Electronic energy + Delta-G solvation = -17079.664914 eV Core-core repulsion = 14371.362189 eV Total energy + Delta-G solvation = -2708.302725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78164 -37.75144 -35.78278 -34.04330 -32.26243 -30.10558 -29.54517 -26.92720 -23.43829 -22.40179 -22.06917 -21.35127 -20.08403 -19.30157 -17.33130 -16.55009 -15.91105 -15.02991 -14.92258 -14.66614 -14.18131 -14.13998 -13.43091 -13.11370 -12.69321 -12.34910 -12.01715 -11.91186 -11.79602 -11.40386 -11.28711 -11.21487 -10.91665 -10.89256 -10.79182 -10.28552 -10.27417 -9.97466 -9.33464 -8.89910 -8.69172 -8.11310 -7.76634 -6.13407 -4.19933 3.25038 3.31935 3.34976 3.50673 3.64320 3.87955 4.29494 4.46955 4.66266 4.73961 4.88814 5.01932 5.12654 5.22589 5.27226 5.35103 5.43280 5.54445 5.66442 5.72475 5.74197 5.82385 5.91588 6.00464 6.14674 6.20561 6.44723 6.95320 7.21271 7.39458 7.54961 7.58583 7.74176 8.01941 8.72973 8.86190 9.25143 9.47589 10.96911 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037160 B = 0.005340 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.325042 B = 5242.447755 C = 5755.488524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.717 5.717 11 C 0.507 3.493 12 O -0.531 6.531 13 C 0.057 3.943 14 H 0.074 0.926 15 C -0.119 4.119 16 C -0.141 4.141 17 C 0.046 3.954 18 N -0.478 5.478 19 C 0.002 3.998 20 C -0.152 4.152 21 C -0.178 4.178 22 H 0.265 0.735 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.387 0.613 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -15.707 -0.358 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.367 5.367 11 C 0.290 3.710 12 O -0.407 6.407 13 C -0.055 4.055 14 H 0.091 0.909 15 C -0.157 4.157 16 C -0.179 4.179 17 C -0.082 4.082 18 N -0.202 5.202 19 C -0.107 4.107 20 C -0.189 4.189 21 C -0.215 4.215 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.219 0.781 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.169 -15.658 -0.149 17.222 hybrid contribution 1.677 0.972 -0.417 1.983 sum 8.846 -14.685 -0.565 17.153 Atomic orbital electron populations 1.69989 1.06101 1.27110 1.49134 1.24953 0.94891 0.99410 0.94793 0.86379 0.79826 0.83076 0.77727 1.19664 1.20832 1.20821 1.21275 0.93258 0.90512 1.52872 0.91928 1.19055 0.88300 0.81927 0.97593 1.46422 1.10838 1.06002 1.73405 1.20103 0.89347 0.83646 0.77855 1.90634 1.16458 1.84548 1.49108 1.22558 0.93588 0.90349 0.98964 0.90862 1.22687 0.99177 0.96670 0.97194 1.22792 0.97869 0.95337 1.01935 1.22818 0.93309 0.94814 0.97221 1.62880 1.46780 1.01099 1.09466 1.22548 0.96367 1.00489 0.91274 1.23036 0.96091 0.99025 1.00788 1.23038 1.04841 0.90542 1.03086 0.92550 0.95718 0.95675 0.78074 0.89980 0.89902 0.90510 0.91400 0.90547 0.92389 0.89753 0.87355 0.89190 0.89110 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 10 N -0.72 -15.46 5.51 -61.47 -0.34 -15.79 16 11 C 0.51 10.57 7.21 -10.98 -0.08 10.49 16 12 O -0.53 -13.34 16.49 5.56 0.09 -13.25 16 13 C 0.06 0.89 2.84 -67.34 -0.19 0.70 16 14 H 0.07 1.03 7.56 -51.93 -0.39 0.64 16 15 C -0.12 -1.50 6.46 -24.59 -0.16 -1.66 16 16 C -0.14 -1.42 6.94 -24.91 -0.17 -1.60 16 17 C 0.05 0.53 6.55 -2.84 -0.02 0.51 16 18 N -0.48 -7.22 4.51 -216.85 -0.98 -8.20 16 19 C 0.00 0.03 5.02 -67.72 -0.34 -0.31 16 20 C -0.15 -2.15 10.46 -26.70 -0.28 -2.43 16 21 C -0.18 -2.03 9.61 -26.70 -0.26 -2.29 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.59 7.21 -51.93 -0.37 0.22 16 32 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 33 H 0.11 1.83 8.14 -51.92 -0.42 1.40 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -32.43 302.07 -8.58 -41.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.69 Total: 4.65 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.94 Total: -3.27 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.58 Total: -49.66 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.43 -8.58 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408370605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.955 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds