Wall clock time and date at job start Sun Mar 29 2020 21:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47340 * 300.00192 * 3 2 1 6 6 H 1.48498 * 109.46961 * 60.00143 * 3 2 1 7 7 C 1.37878 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99871 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00184 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99944 * 180.02562 * 11 10 9 14 14 H 1.09002 * 110.33360 * 300.69984 * 13 11 10 15 15 C 1.54902 * 110.46875 * 63.01851 * 13 11 10 16 16 C 1.55145 * 101.65579 * 155.94535 * 15 13 11 17 17 C 1.54317 * 103.01547 * 324.34887 * 16 15 13 18 18 N 1.47440 * 107.23634 * 22.28209 * 17 16 15 19 19 C 1.46897 * 111.00101 * 123.26048 * 18 17 16 20 20 C 1.52995 * 117.50247 * 127.90309 * 19 18 17 21 21 C 1.52996 * 117.50118 * 59.24189 * 19 18 17 22 22 H 0.97000 * 120.00290 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47224 * 59.99928 * 9 7 2 24 24 H 1.09003 * 109.47487 * 300.00303 * 9 7 2 25 25 H 0.96995 * 120.00203 * 0.02562 * 10 9 7 26 26 H 1.09002 * 110.99026 * 274.03814 * 15 13 11 27 27 H 1.09006 * 110.99318 * 37.85245 * 15 13 11 28 28 H 1.08995 * 110.70454 * 205.96138 * 16 15 13 29 29 H 1.09000 * 110.85257 * 82.79805 * 16 15 13 30 30 H 1.09004 * 109.88612 * 262.87056 * 17 16 15 31 31 H 1.08999 * 110.01995 * 141.76136 * 17 16 15 32 32 H 1.09002 * 115.54622 * 273.56950 * 19 18 17 33 33 H 1.09009 * 117.49741 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.50354 * 145.01688 * 20 19 18 35 35 H 1.09005 * 117.49844 * 214.98141 * 21 19 18 36 36 H 1.08997 * 117.49725 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0009 13 6 2.7331 -6.0288 0.0006 14 1 3.3759 -5.9780 -0.8782 15 6 3.5854 -6.0121 1.2939 16 6 4.0158 -7.4985 1.4049 17 6 2.7792 -8.2584 0.8806 18 7 2.0145 -7.3203 0.0386 19 6 1.8286 -7.8595 -1.3151 20 6 0.4036 -7.8985 -1.8706 21 6 1.0968 -9.1964 -1.4488 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 4.4529 -5.3618 1.1814 27 1 2.9849 -5.7142 2.1535 28 1 4.2204 -7.7641 2.4420 29 1 4.8852 -7.6985 0.7786 30 1 2.1654 -8.5902 1.7180 31 1 3.0929 -9.1176 0.2877 32 1 2.6370 -7.6558 -2.0173 33 1 -0.3962 -7.5245 -1.2312 34 1 0.2744 -7.7209 -2.9383 35 1 1.4236 -9.8722 -2.2392 36 1 0.7537 -9.6761 -0.5322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408370605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:40 Heat of formation + Delta-G solvation = -32.942909 kcal Electronic energy + Delta-G solvation = -17080.700481 eV Core-core repulsion = 14371.362189 eV Total energy + Delta-G solvation = -2709.338291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10239 -39.24977 -36.82451 -36.06497 -34.31077 -31.10679 -30.89826 -28.83570 -25.15301 -23.61970 -23.32000 -22.53111 -21.26710 -20.80505 -19.01929 -17.76871 -17.64948 -16.88662 -16.22703 -15.94992 -15.77260 -15.63164 -14.68340 -14.48570 -14.08521 -14.00391 -13.78840 -13.34174 -12.89150 -12.85000 -12.77672 -12.57853 -12.40007 -12.21939 -12.10967 -11.73818 -11.45204 -11.31153 -10.96901 -10.80902 -10.58707 -9.77501 -9.21703 -8.28757 -6.45660 1.43136 1.44672 1.58166 1.85452 2.26086 2.44890 2.86114 3.06083 3.06782 3.65357 3.67581 3.94948 4.02870 4.14168 4.17052 4.25664 4.34414 4.55984 4.62839 4.78028 4.87338 4.93137 4.97251 5.07513 5.11846 5.14085 5.24704 5.32469 5.32986 5.50970 5.71354 5.86042 5.96237 6.20174 6.66218 7.00155 7.24418 7.58724 8.83924 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037160 B = 0.005340 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.325042 B = 5242.447755 C = 5755.488524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.709 5.709 11 C 0.501 3.499 12 O -0.583 6.583 13 C 0.067 3.933 14 H 0.097 0.903 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.044 3.956 18 N -0.512 5.512 19 C -0.007 4.007 20 C -0.181 4.181 21 C -0.143 4.143 22 H 0.268 0.732 23 H -0.017 1.017 24 H -0.017 1.017 25 H 0.406 0.594 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 -16.527 -0.486 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.360 5.360 11 C 0.287 3.713 12 O -0.462 6.462 13 C -0.045 4.045 14 H 0.115 0.885 15 C -0.156 4.156 16 C -0.165 4.165 17 C -0.082 4.082 18 N -0.236 5.236 19 C -0.116 4.116 20 C -0.219 4.219 21 C -0.180 4.180 22 H 0.077 0.923 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.241 0.759 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.767 -16.518 -0.269 19.719 hybrid contribution 0.467 1.166 -0.372 1.310 sum 11.234 -15.351 -0.641 19.034 Atomic orbital electron populations 1.70158 1.08393 1.28485 1.50155 1.26099 0.95757 1.04005 0.93845 0.85087 0.79136 0.77179 0.77657 1.17450 1.20476 1.20463 1.21649 0.94311 0.90481 1.52654 0.89711 1.18479 0.88689 0.84481 0.93677 1.46155 1.10920 1.05364 1.73593 1.21278 0.89834 0.84506 0.75693 1.90611 1.19256 1.85314 1.51060 1.22456 0.92160 0.88271 1.01591 0.88512 1.22731 0.99016 0.99398 0.94462 1.22772 0.97684 0.92497 1.03536 1.22884 0.93633 0.94906 0.96779 1.62678 1.48387 1.01708 1.10822 1.22701 0.95903 1.01987 0.90988 1.22963 0.95954 1.02402 1.00610 1.23090 1.01834 0.89486 1.03582 0.92286 0.99924 0.99920 0.75886 0.87578 0.92215 0.88758 0.88972 0.91236 0.90285 0.88215 0.91352 0.88376 0.85993 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.71 29.54 68.60 2.03 44.74 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -30.62 9.28 25.60 0.24 -30.38 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 15.34 5.43 85.63 0.46 15.80 16 10 N -0.71 -31.27 5.51 -466.77 -2.57 -33.84 16 11 C 0.50 21.48 7.21 87.66 0.63 22.11 16 12 O -0.58 -31.16 16.49 -3.03 -0.05 -31.21 16 13 C 0.07 1.99 2.84 44.64 0.13 2.12 16 14 H 0.10 2.45 7.56 -2.39 -0.02 2.43 16 15 C -0.12 -2.69 6.46 31.98 0.21 -2.48 16 16 C -0.13 -2.07 6.94 31.78 0.22 -1.85 16 17 C 0.04 0.92 6.55 86.65 0.57 1.48 16 18 N -0.51 -14.93 4.51 -839.97 -3.78 -18.71 16 19 C -0.01 -0.18 5.02 44.91 0.23 0.04 16 20 C -0.18 -5.25 10.46 30.62 0.32 -4.93 16 21 C -0.14 -2.97 9.61 30.62 0.29 -2.68 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 24 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 25 H 0.41 14.67 8.32 -92.71 -0.77 13.90 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.64 8.05 -2.38 -0.02 1.63 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 1.31 7.21 -2.39 -0.02 1.29 16 32 H 0.10 2.28 7.74 -2.39 -0.02 2.26 16 33 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -75.29 302.07 -0.05 -75.33 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.29 Total: 21.01 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 3.76 Total: -0.18 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -6.07 Total: -109.69 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.29 -0.05 -75.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408370605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.391 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds