Wall clock time and date at job start Sun Mar 29 2020 22:58:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.33002 * 1
3 3 C 1.47100 * 120.00107 * 2 1
4 4 O 1.21616 * 119.99899 * 359.97438 * 3 2 1
5 5 N 1.34774 * 120.00098 * 179.97438 * 3 2 1
6 6 C 1.46494 * 120.00169 * 180.02562 * 5 3 2
7 7 C 1.52996 * 109.47280 * 179.97438 * 6 5 3
8 8 C 1.53349 * 109.42091 * 295.12817 * 7 6 5
9 9 C 1.53196 * 109.15353 * 178.67328 * 8 7 6
10 10 N 1.46928 * 108.89135 * 54.57497 * 9 8 7
11 11 C 1.36936 * 120.63013 * 126.29699 * 10 9 8
12 12 H 1.07999 * 120.00022 * 331.83633 * 11 10 9
13 13 C 1.38813 * 120.00005 * 151.82709 * 11 10 9
14 14 N 1.31618 * 120.00004 * 343.09585 * 13 11 10
15 15 Si 1.86806 * 119.99953 * 163.09475 * 13 11 10
16 16 H 1.48494 * 109.47083 * 60.00061 * 15 13 11
17 17 H 1.48500 * 109.46851 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.47024 * 300.00112 * 15 13 11
19 19 C 1.46924 * 118.73859 * 306.32337 * 10 9 8
20 20 C 1.53044 * 109.46279 * 174.99967 * 7 6 5
21 21 H 1.07996 * 120.00095 * 180.02562 * 1 2 3
22 22 H 1.08002 * 119.99766 * 0.02562 * 1 2 3
23 23 H 1.07994 * 119.99759 * 179.97438 * 2 1 3
24 24 H 0.96999 * 119.99862 * 359.97438 * 5 3 2
25 25 H 1.08996 * 109.47191 * 59.99822 * 6 5 3
26 26 H 1.08998 * 109.47122 * 300.00127 * 6 5 3
27 27 H 1.09003 * 109.46065 * 55.02896 * 7 6 5
28 28 H 1.08998 * 109.68701 * 58.70817 * 8 7 6
29 29 H 1.09000 * 109.47234 * 298.50885 * 8 7 6
30 30 H 1.08996 * 109.58345 * 294.72319 * 9 8 7
31 31 H 1.08994 * 109.58644 * 174.43734 * 9 8 7
32 32 H 0.96996 * 119.99787 * 179.97438 * 14 13 11
33 33 H 1.09000 * 109.58664 * 173.39523 * 19 10 9
34 34 H 1.08996 * 109.58580 * 293.67452 * 19 10 9
35 35 H 1.08992 * 109.49619 * 61.43154 * 20 7 6
36 36 H 1.08999 * 109.52313 * 301.35168 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3300 0.0000 0.0000
3 6 2.0655 1.2739 0.0000
4 8 1.4575 2.3271 -0.0005
5 7 3.4133 1.2739 0.0005
6 6 4.1458 2.5426 0.0011
7 6 5.6500 2.2630 0.0023
8 6 6.0381 1.5660 1.3119
9 6 7.5389 1.2592 1.2925
10 7 8.2752 2.5028 1.0276
11 6 9.2745 2.9145 1.8685
12 1 9.2501 2.6381 2.9122
13 6 10.3189 3.6872 1.3793
14 7 10.5401 3.7500 0.0834
15 14 11.4103 4.6377 2.5604
16 1 12.0711 3.6911 3.4944
17 1 12.4431 5.3785 1.7925
18 1 10.5837 5.5995 3.3330
19 6 7.9186 3.2964 -0.1563
20 6 6.4141 3.5831 -0.1229
21 1 -0.5400 -0.9353 0.0004
22 1 -0.5400 0.9353 -0.0004
23 1 1.8700 -0.9353 0.0004
24 1 3.8983 0.4339 0.0013
25 1 3.8821 3.1139 0.8910
26 1 3.8828 3.1143 -0.8888
27 1 5.9000 1.6175 -0.8397
28 1 5.4781 0.6364 1.4131
29 1 5.8116 2.2211 2.1531
30 1 7.7533 0.5335 0.5081
31 1 7.8415 0.8539 2.2580
32 1 11.2696 4.2902 -0.2584
33 1 8.4700 4.2366 -0.1456
34 1 8.1664 2.7378 -1.0588
35 1 6.1838 4.2192 0.7316
36 1 6.1196 4.0886 -1.0426
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408525962.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:58:53
Heat of formation + Delta-G solvation = -8.339566 kcal
Electronic energy + Delta-G solvation = -16905.759399 eV
Core-core repulsion = 14197.487989 eV
Total energy + Delta-G solvation = -2708.271410 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.70890 -37.80954 -34.97264 -33.13219 -32.71142 -30.76801 -29.72343 -27.05242
-24.40066 -22.88717 -22.07241 -20.96191 -19.86462 -19.04081 -17.46869 -16.68271
-15.84956 -15.18874 -14.84179 -14.41288 -13.96562 -13.63118 -13.56978 -13.43343
-13.14256 -12.34027 -12.31774 -12.05037 -11.87545 -11.33841 -10.98260 -10.71395
-10.50850 -10.26289 -10.22107 -10.04647 -10.01027 -9.86611 -9.54420 -9.43618
-8.95502 -8.46165 -6.66603 -5.78678 -3.21208 1.26578 3.28326 3.29716
3.38797 3.44576 3.46067 4.50089 4.71304 4.89131 5.12332 5.23100
5.37876 5.38842 5.42298 5.60830 5.86793 5.93520 6.02000 6.04697
6.12164 6.17645 6.32270 6.43886 6.48805 6.60482 6.69625 6.76609
6.81520 6.98038 7.37198 7.55688 7.66152 7.79562 8.23843 8.45845
9.21963 9.85466 10.42243 11.29854
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.062203 B = 0.004498 C = 0.004420
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 450.027891 B = 6223.016757 C = 6332.886252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.210 4.210
3 C 0.537 3.463
4 O -0.551 6.551
5 N -0.719 5.719
6 C 0.122 3.878
7 C -0.090 4.090
8 C -0.127 4.127
9 C 0.145 3.855
10 N -0.592 5.592
11 C -0.254 4.254
12 H 0.064 0.936
13 C 0.003 3.997
14 N -0.903 5.903
15 Si 0.902 3.098
16 H -0.283 1.283
17 H -0.290 1.290
18 H -0.284 1.284
19 C 0.172 3.828
20 C -0.133 4.133
21 H 0.113 0.887
22 H 0.113 0.887
23 H 0.126 0.874
24 H 0.401 0.599
25 H 0.066 0.934
26 H 0.064 0.936
27 H 0.068 0.932
28 H 0.047 0.953
29 H 0.059 0.941
30 H 0.016 0.984
31 H 0.052 0.948
32 H 0.254 0.746
33 H 0.088 0.912
34 H 0.018 0.982
35 H 0.057 0.943
36 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.402 -7.466 -1.116 16.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.231 4.231
3 C 0.325 3.675
4 O -0.431 6.431
5 N -0.369 5.369
6 C -0.001 4.001
7 C -0.109 4.109
8 C -0.167 4.167
9 C 0.019 3.981
10 N -0.315 5.315
11 C -0.384 4.384
12 H 0.082 0.918
13 C -0.196 4.196
14 N -0.548 5.548
15 Si 0.732 3.268
16 H -0.209 1.209
17 H -0.216 1.216
18 H -0.210 1.210
19 C 0.046 3.954
20 C -0.173 4.173
21 H 0.131 0.869
22 H 0.131 0.869
23 H 0.144 0.856
24 H 0.236 0.764
25 H 0.084 0.916
26 H 0.082 0.918
27 H 0.087 0.913
28 H 0.066 0.934
29 H 0.078 0.922
30 H 0.034 0.966
31 H 0.071 0.929
32 H 0.064 0.936
33 H 0.106 0.894
34 H 0.036 0.964
35 H 0.076 0.924
36 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -14.640 -6.606 -1.199 16.106
hybrid contribution 0.887 0.007 0.531 1.034
sum -13.752 -6.599 -0.668 15.268
Atomic orbital electron populations
1.24710 0.95410 1.03152 0.90662 1.22844 0.96500 0.97171 1.06620
1.18716 0.82416 0.89809 0.76570 1.90780 1.68427 1.33378 1.50525
1.46028 1.06097 1.10451 1.74368 1.21590 0.91685 0.84905 1.01928
1.21368 0.91600 0.99161 0.98774 1.22134 0.98990 0.98759 0.96787
1.20885 0.89532 0.89287 0.98434 1.44038 1.38661 1.20524 1.28296
1.19150 0.99362 1.29632 0.90210 0.91798 1.25043 0.96773 1.02044
0.95745 1.70018 1.31453 1.41970 1.11332 0.86371 0.79982 0.80139
0.80281 1.20898 1.21630 1.21018 1.20761 0.88793 0.97521 0.88348
1.22174 0.99742 0.94918 1.00438 0.86862 0.86877 0.85619 0.76393
0.91610 0.91789 0.91312 0.93424 0.92184 0.96620 0.92917 0.93584
0.89430 0.96426 0.92389 0.93045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.83 14.31 28.92 0.41 -0.41 16
2 C -0.21 -2.00 10.03 -37.80 -0.38 -2.38 16
3 C 0.54 7.24 7.76 -12.67 -0.10 7.14 16
4 O -0.55 -9.62 16.22 5.26 0.09 -9.53 16
5 N -0.72 -8.97 5.27 -61.50 -0.32 -9.30 16
6 C 0.12 1.77 5.06 -4.05 -0.02 1.75 16
7 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16
8 C -0.13 -2.09 5.27 -26.45 -0.14 -2.23 16
9 C 0.15 2.95 6.51 -3.71 -0.02 2.93 16
10 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16
11 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16
12 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16
13 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16
14 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16
15 Si 0.90 21.67 29.59 -169.99 -5.03 16.65 16
16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
19 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16
20 C -0.13 -2.47 5.36 -26.61 -0.14 -2.62 16
21 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16
22 H 0.11 1.07 7.49 -52.49 -0.39 0.68 16
23 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
24 H 0.40 4.05 7.63 -40.82 -0.31 3.73 16
25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16
29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16
32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
33 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16
34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 296.61 15.07 4.47 4.47
Total: -1.00 -31.66 296.61 -7.11 -38.77
By element:
Atomic # 1 Polarization: 5.80 SS G_CDS: -5.58 Total: 0.22 kcal
Atomic # 6 Polarization: 0.28 SS G_CDS: -0.84 Total: -0.55 kcal
Atomic # 7 Polarization: -49.80 SS G_CDS: -0.22 Total: -50.02 kcal
Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -31.66 -7.11 -38.77 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408525962.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.428 kcal
(2) G-P(sol) polarization free energy of solvation -31.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds