Wall clock time and date at job start Sun Mar 29 2020 22:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33002 * 1 3 3 C 1.47100 * 120.00107 * 2 1 4 4 O 1.21616 * 119.99899 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00098 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00169 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47280 * 179.97438 * 6 5 3 8 8 C 1.53349 * 109.42091 * 295.12817 * 7 6 5 9 9 C 1.53196 * 109.15353 * 178.67328 * 8 7 6 10 10 N 1.46928 * 108.89135 * 54.57497 * 9 8 7 11 11 C 1.36936 * 120.63013 * 126.29699 * 10 9 8 12 12 H 1.07999 * 120.00022 * 331.83633 * 11 10 9 13 13 C 1.38813 * 120.00005 * 151.82709 * 11 10 9 14 14 N 1.31618 * 120.00004 * 343.09585 * 13 11 10 15 15 Si 1.86806 * 119.99953 * 163.09475 * 13 11 10 16 16 H 1.48494 * 109.47083 * 60.00061 * 15 13 11 17 17 H 1.48500 * 109.46851 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47024 * 300.00112 * 15 13 11 19 19 C 1.46924 * 118.73859 * 306.32337 * 10 9 8 20 20 C 1.53044 * 109.46279 * 174.99967 * 7 6 5 21 21 H 1.07996 * 120.00095 * 180.02562 * 1 2 3 22 22 H 1.08002 * 119.99766 * 0.02562 * 1 2 3 23 23 H 1.07994 * 119.99759 * 179.97438 * 2 1 3 24 24 H 0.96999 * 119.99862 * 359.97438 * 5 3 2 25 25 H 1.08996 * 109.47191 * 59.99822 * 6 5 3 26 26 H 1.08998 * 109.47122 * 300.00127 * 6 5 3 27 27 H 1.09003 * 109.46065 * 55.02896 * 7 6 5 28 28 H 1.08998 * 109.68701 * 58.70817 * 8 7 6 29 29 H 1.09000 * 109.47234 * 298.50885 * 8 7 6 30 30 H 1.08996 * 109.58345 * 294.72319 * 9 8 7 31 31 H 1.08994 * 109.58644 * 174.43734 * 9 8 7 32 32 H 0.96996 * 119.99787 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.58664 * 173.39523 * 19 10 9 34 34 H 1.08996 * 109.58580 * 293.67452 * 19 10 9 35 35 H 1.08992 * 109.49619 * 61.43154 * 20 7 6 36 36 H 1.08999 * 109.52313 * 301.35168 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2739 0.0005 6 6 4.1458 2.5426 0.0011 7 6 5.6500 2.2630 0.0023 8 6 6.0381 1.5660 1.3119 9 6 7.5389 1.2592 1.2925 10 7 8.2752 2.5028 1.0276 11 6 9.2745 2.9145 1.8685 12 1 9.2501 2.6381 2.9122 13 6 10.3189 3.6872 1.3793 14 7 10.5401 3.7500 0.0834 15 14 11.4103 4.6377 2.5604 16 1 12.0711 3.6911 3.4944 17 1 12.4431 5.3785 1.7925 18 1 10.5837 5.5995 3.3330 19 6 7.9186 3.2964 -0.1563 20 6 6.4141 3.5831 -0.1229 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8700 -0.9353 0.0004 24 1 3.8983 0.4339 0.0013 25 1 3.8821 3.1139 0.8910 26 1 3.8828 3.1143 -0.8888 27 1 5.9000 1.6175 -0.8397 28 1 5.4781 0.6364 1.4131 29 1 5.8116 2.2211 2.1531 30 1 7.7533 0.5335 0.5081 31 1 7.8415 0.8539 2.2580 32 1 11.2696 4.2902 -0.2584 33 1 8.4700 4.2366 -0.1456 34 1 8.1664 2.7378 -1.0588 35 1 6.1838 4.2192 0.7316 36 1 6.1196 4.0886 -1.0426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408525962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:53 Heat of formation + Delta-G solvation = -8.339566 kcal Electronic energy + Delta-G solvation = -16905.759399 eV Core-core repulsion = 14197.487989 eV Total energy + Delta-G solvation = -2708.271410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70890 -37.80954 -34.97264 -33.13219 -32.71142 -30.76801 -29.72343 -27.05242 -24.40066 -22.88717 -22.07241 -20.96191 -19.86462 -19.04081 -17.46869 -16.68271 -15.84956 -15.18874 -14.84179 -14.41288 -13.96562 -13.63118 -13.56978 -13.43343 -13.14256 -12.34027 -12.31774 -12.05037 -11.87545 -11.33841 -10.98260 -10.71395 -10.50850 -10.26289 -10.22107 -10.04647 -10.01027 -9.86611 -9.54420 -9.43618 -8.95502 -8.46165 -6.66603 -5.78678 -3.21208 1.26578 3.28326 3.29716 3.38797 3.44576 3.46067 4.50089 4.71304 4.89131 5.12332 5.23100 5.37876 5.38842 5.42298 5.60830 5.86793 5.93520 6.02000 6.04697 6.12164 6.17645 6.32270 6.43886 6.48805 6.60482 6.69625 6.76609 6.81520 6.98038 7.37198 7.55688 7.66152 7.79562 8.23843 8.45845 9.21963 9.85466 10.42243 11.29854 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062203 B = 0.004498 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.027891 B = 6223.016757 C = 6332.886252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.210 4.210 3 C 0.537 3.463 4 O -0.551 6.551 5 N -0.719 5.719 6 C 0.122 3.878 7 C -0.090 4.090 8 C -0.127 4.127 9 C 0.145 3.855 10 N -0.592 5.592 11 C -0.254 4.254 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.172 3.828 20 C -0.133 4.133 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.401 0.599 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.254 0.746 33 H 0.088 0.912 34 H 0.018 0.982 35 H 0.057 0.943 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.402 -7.466 -1.116 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.231 4.231 3 C 0.325 3.675 4 O -0.431 6.431 5 N -0.369 5.369 6 C -0.001 4.001 7 C -0.109 4.109 8 C -0.167 4.167 9 C 0.019 3.981 10 N -0.315 5.315 11 C -0.384 4.384 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.046 3.954 20 C -0.173 4.173 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.144 0.856 24 H 0.236 0.764 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.640 -6.606 -1.199 16.106 hybrid contribution 0.887 0.007 0.531 1.034 sum -13.752 -6.599 -0.668 15.268 Atomic orbital electron populations 1.24710 0.95410 1.03152 0.90662 1.22844 0.96500 0.97171 1.06620 1.18716 0.82416 0.89809 0.76570 1.90780 1.68427 1.33378 1.50525 1.46028 1.06097 1.10451 1.74368 1.21590 0.91685 0.84905 1.01928 1.21368 0.91600 0.99161 0.98774 1.22134 0.98990 0.98759 0.96787 1.20885 0.89532 0.89287 0.98434 1.44038 1.38661 1.20524 1.28296 1.19150 0.99362 1.29632 0.90210 0.91798 1.25043 0.96773 1.02044 0.95745 1.70018 1.31453 1.41970 1.11332 0.86371 0.79982 0.80139 0.80281 1.20898 1.21630 1.21018 1.20761 0.88793 0.97521 0.88348 1.22174 0.99742 0.94918 1.00438 0.86862 0.86877 0.85619 0.76393 0.91610 0.91789 0.91312 0.93424 0.92184 0.96620 0.92917 0.93584 0.89430 0.96426 0.92389 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 14.31 28.92 0.41 -0.41 16 2 C -0.21 -2.00 10.03 -37.80 -0.38 -2.38 16 3 C 0.54 7.24 7.76 -12.67 -0.10 7.14 16 4 O -0.55 -9.62 16.22 5.26 0.09 -9.53 16 5 N -0.72 -8.97 5.27 -61.50 -0.32 -9.30 16 6 C 0.12 1.77 5.06 -4.05 -0.02 1.75 16 7 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16 8 C -0.13 -2.09 5.27 -26.45 -0.14 -2.23 16 9 C 0.15 2.95 6.51 -3.71 -0.02 2.93 16 10 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 11 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 12 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16 15 Si 0.90 21.67 29.59 -169.99 -5.03 16.65 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 20 C -0.13 -2.47 5.36 -26.61 -0.14 -2.62 16 21 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 22 H 0.11 1.07 7.49 -52.49 -0.39 0.68 16 23 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 24 H 0.40 4.05 7.63 -40.82 -0.31 3.73 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -31.66 296.61 -7.11 -38.77 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.58 Total: 0.22 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.84 Total: -0.55 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.22 Total: -50.02 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.66 -7.11 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408525962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.428 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds