Wall clock time and date at job start Sun Mar 29 2020 22:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33002 * 1 3 3 C 1.47100 * 120.00107 * 2 1 4 4 O 1.21616 * 119.99899 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00098 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00169 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47280 * 179.97438 * 6 5 3 8 8 C 1.53349 * 109.42091 * 295.12817 * 7 6 5 9 9 C 1.53196 * 109.15353 * 178.67328 * 8 7 6 10 10 N 1.46928 * 108.89135 * 54.57497 * 9 8 7 11 11 C 1.36936 * 120.63013 * 126.29699 * 10 9 8 12 12 H 1.07999 * 120.00022 * 331.83633 * 11 10 9 13 13 C 1.38813 * 120.00005 * 151.82709 * 11 10 9 14 14 N 1.31618 * 120.00004 * 343.09585 * 13 11 10 15 15 Si 1.86806 * 119.99953 * 163.09475 * 13 11 10 16 16 H 1.48494 * 109.47083 * 60.00061 * 15 13 11 17 17 H 1.48500 * 109.46851 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47024 * 300.00112 * 15 13 11 19 19 C 1.46924 * 118.73859 * 306.32337 * 10 9 8 20 20 C 1.53044 * 109.46279 * 174.99967 * 7 6 5 21 21 H 1.07996 * 120.00095 * 180.02562 * 1 2 3 22 22 H 1.08002 * 119.99766 * 0.02562 * 1 2 3 23 23 H 1.07994 * 119.99759 * 179.97438 * 2 1 3 24 24 H 0.96999 * 119.99862 * 359.97438 * 5 3 2 25 25 H 1.08996 * 109.47191 * 59.99822 * 6 5 3 26 26 H 1.08998 * 109.47122 * 300.00127 * 6 5 3 27 27 H 1.09003 * 109.46065 * 55.02896 * 7 6 5 28 28 H 1.08998 * 109.68701 * 58.70817 * 8 7 6 29 29 H 1.09000 * 109.47234 * 298.50885 * 8 7 6 30 30 H 1.08996 * 109.58345 * 294.72319 * 9 8 7 31 31 H 1.08994 * 109.58644 * 174.43734 * 9 8 7 32 32 H 0.96996 * 119.99787 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.58664 * 173.39523 * 19 10 9 34 34 H 1.08996 * 109.58580 * 293.67452 * 19 10 9 35 35 H 1.08992 * 109.49619 * 61.43154 * 20 7 6 36 36 H 1.08999 * 109.52313 * 301.35168 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2739 0.0005 6 6 4.1458 2.5426 0.0011 7 6 5.6500 2.2630 0.0023 8 6 6.0381 1.5660 1.3119 9 6 7.5389 1.2592 1.2925 10 7 8.2752 2.5028 1.0276 11 6 9.2745 2.9145 1.8685 12 1 9.2501 2.6381 2.9122 13 6 10.3189 3.6872 1.3793 14 7 10.5401 3.7500 0.0834 15 14 11.4103 4.6377 2.5604 16 1 12.0711 3.6911 3.4944 17 1 12.4431 5.3785 1.7925 18 1 10.5837 5.5995 3.3330 19 6 7.9186 3.2964 -0.1563 20 6 6.4141 3.5831 -0.1229 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8700 -0.9353 0.0004 24 1 3.8983 0.4339 0.0013 25 1 3.8821 3.1139 0.8910 26 1 3.8828 3.1143 -0.8888 27 1 5.9000 1.6175 -0.8397 28 1 5.4781 0.6364 1.4131 29 1 5.8116 2.2211 2.1531 30 1 7.7533 0.5335 0.5081 31 1 7.8415 0.8539 2.2580 32 1 11.2696 4.2902 -0.2584 33 1 8.4700 4.2366 -0.1456 34 1 8.1664 2.7378 -1.0588 35 1 6.1838 4.2192 0.7316 36 1 6.1196 4.0886 -1.0426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408525962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:52 Heat of formation + Delta-G solvation = -29.548486 kcal Electronic energy + Delta-G solvation = -16906.679087 eV Core-core repulsion = 14197.487989 eV Total energy + Delta-G solvation = -2709.191098 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80123 -39.33050 -36.42945 -34.48452 -33.77317 -32.46953 -31.39977 -28.58368 -26.05269 -24.17191 -23.57849 -22.40846 -21.01851 -20.42294 -18.74491 -18.24108 -17.01568 -16.73916 -16.30838 -15.74997 -15.31506 -15.30314 -14.95974 -14.71847 -14.45439 -13.93380 -13.82915 -13.43711 -13.00640 -12.81448 -12.75069 -12.55117 -12.28190 -12.02784 -11.84907 -11.63244 -11.29092 -11.11061 -10.93221 -10.73891 -10.52530 -10.03468 -8.66716 -7.87290 -5.32389 0.51526 1.46347 1.49136 1.55602 2.30637 2.37726 2.51529 3.27169 3.71385 3.81953 3.90908 3.97136 4.09226 4.31725 4.50784 4.53715 4.68573 4.72295 4.78001 4.83548 4.93162 5.01926 5.13650 5.28033 5.29275 5.36489 5.38442 5.44705 5.53369 5.56833 5.65786 5.78810 6.40055 6.61519 7.15945 7.26701 7.88346 8.39021 9.18739 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062203 B = 0.004498 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.027891 B = 6223.016757 C = 6332.886252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.225 4.225 3 C 0.530 3.470 4 O -0.601 6.601 5 N -0.710 5.710 6 C 0.135 3.865 7 C -0.077 4.077 8 C -0.114 4.114 9 C 0.139 3.861 10 N -0.613 5.613 11 C -0.266 4.266 12 H 0.065 0.935 13 C -0.050 4.050 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.280 1.280 19 C 0.178 3.822 20 C -0.123 4.123 21 H 0.152 0.848 22 H 0.093 0.907 23 H 0.160 0.840 24 H 0.416 0.584 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.051 0.949 32 H 0.250 0.750 33 H 0.050 0.950 34 H -0.001 1.001 35 H 0.048 0.952 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 -9.192 -0.616 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.245 4.245 3 C 0.320 3.680 4 O -0.484 6.484 5 N -0.361 5.361 6 C 0.011 3.989 7 C -0.096 4.096 8 C -0.153 4.153 9 C 0.014 3.986 10 N -0.336 5.336 11 C -0.396 4.396 12 H 0.082 0.918 13 C -0.246 4.246 14 N -0.580 5.580 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.206 1.206 19 C 0.052 3.948 20 C -0.163 4.163 21 H 0.170 0.830 22 H 0.112 0.888 23 H 0.178 0.822 24 H 0.253 0.747 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.189 -8.382 -0.686 18.243 hybrid contribution 1.318 0.494 0.367 1.454 sum -14.872 -7.888 -0.319 16.837 Atomic orbital electron populations 1.24996 0.95157 1.04088 0.88056 1.22923 0.96826 0.96272 1.08484 1.19452 0.82475 0.90739 0.75308 1.90758 1.69283 1.35462 1.52892 1.45896 1.06053 1.10246 1.73905 1.21256 0.90594 0.85869 1.01227 1.21197 0.92102 0.97456 0.98884 1.21989 0.96369 1.00411 0.96545 1.21076 0.91510 0.87636 0.98364 1.44324 1.38772 1.22395 1.28150 1.19488 0.99856 1.29480 0.90773 0.91760 1.25782 0.98390 1.03218 0.97173 1.70169 1.32064 1.42841 1.12961 0.85372 0.78144 0.78789 0.78338 1.20017 1.21984 1.20619 1.20559 0.91482 0.95366 0.87399 1.21983 0.96575 0.96723 1.00986 0.83033 0.88822 0.82222 0.74674 0.92840 0.92185 0.90364 0.89501 0.93286 0.96279 0.93021 0.94119 0.93128 0.98246 0.93271 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 14.31 66.65 0.95 -0.17 16 2 C -0.22 -3.54 10.03 23.43 0.23 -3.30 16 3 C 0.53 13.27 7.76 86.57 0.67 13.94 16 4 O -0.60 -20.61 16.22 -4.08 -0.07 -20.68 16 5 N -0.71 -15.87 5.27 -466.74 -2.46 -18.33 16 6 C 0.13 3.67 5.06 86.38 0.44 4.11 16 7 C -0.08 -2.31 2.19 -10.66 -0.02 -2.33 16 8 C -0.11 -3.49 5.27 30.78 0.16 -3.33 16 9 C 0.14 5.51 6.51 86.36 0.56 6.08 16 10 N -0.61 -30.62 2.99 -699.11 -2.09 -32.71 16 11 C -0.27 -14.72 9.58 84.03 0.81 -13.92 16 12 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 13 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 14 N -0.93 -55.53 11.20 21.65 0.24 -55.29 16 15 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 C 0.18 8.52 5.30 86.36 0.46 8.98 16 20 C -0.12 -4.54 5.36 30.67 0.16 -4.37 16 21 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 22 H 0.09 1.64 7.49 -2.91 -0.02 1.62 16 23 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 24 H 0.42 6.82 7.63 -92.71 -0.71 6.11 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.09 2.00 7.16 -2.39 -0.02 1.99 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 32 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.51 296.61 2.84 -67.67 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.34 Total: 8.88 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.84 Total: 3.27 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.31 Total: -106.33 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.07 Total: -20.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.51 2.84 -67.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408525962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.123 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds