Wall clock time and date at job start Sun Mar 29 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50701 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.30254 * 125.61762 * 90.02528 * 4 3 2 6 6 C 1.34479 * 108.69844 * 179.97438 * 5 4 3 7 7 C 1.50701 * 126.16616 * 179.97438 * 6 5 4 8 8 C 1.34335 * 107.67032 * 359.97438 * 6 5 4 9 9 C 1.50699 * 126.44107 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.46895 * 90.00275 * 9 8 6 11 11 C 1.46495 * 120.00132 * 269.99776 * 10 9 8 12 12 C 1.36937 * 120.00124 * 89.99587 * 10 9 8 13 13 H 1.08004 * 119.99802 * 20.36678 * 12 10 9 14 14 C 1.38814 * 120.00306 * 200.36771 * 12 10 9 15 15 N 1.31618 * 119.99669 * 14.98462 * 14 12 10 16 16 Si 1.86799 * 120.00073 * 194.98066 * 14 12 10 17 17 H 1.48497 * 109.47119 * 85.00459 * 16 14 12 18 18 H 1.48496 * 109.46858 * 205.00156 * 16 14 12 19 19 H 1.48497 * 109.47332 * 325.00185 * 16 14 12 20 20 O 1.33965 * 125.61607 * 269.98368 * 4 3 2 21 21 H 1.09002 * 109.46961 * 60.00423 * 1 2 3 22 22 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47533 * 299.99849 * 1 2 3 24 24 H 1.08995 * 109.47533 * 240.00151 * 2 1 3 25 25 H 1.08996 * 109.47309 * 119.99799 * 2 1 3 26 26 H 1.09000 * 109.47204 * 59.99401 * 3 2 1 27 27 H 1.09002 * 109.46943 * 299.99588 * 3 2 1 28 28 H 1.09004 * 109.46959 * 89.97436 * 7 6 5 29 29 H 1.08993 * 109.47604 * 209.97742 * 7 6 5 30 30 H 1.09005 * 109.46949 * 329.98194 * 7 6 5 31 31 H 1.09006 * 109.46778 * 209.99622 * 9 8 6 32 32 H 1.08992 * 109.47585 * 330.00151 * 9 8 6 33 33 H 1.09003 * 109.47307 * 95.08981 * 11 10 9 34 34 H 1.09000 * 109.47146 * 215.09178 * 11 10 9 35 35 H 1.09004 * 109.46967 * 335.08875 * 11 10 9 36 36 H 0.97000 * 119.99805 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4430 -1.0579 6 6 5.5924 1.4435 -0.6660 7 6 6.7977 1.4435 -1.5706 8 6 5.6094 1.4440 0.6772 9 6 6.8330 1.4442 1.5569 10 7 7.2297 2.8255 1.8415 11 6 8.1686 3.5156 0.9537 12 6 6.7227 3.4715 2.9373 13 1 6.3104 2.9020 3.7571 14 6 6.7387 4.8584 2.9944 15 7 6.9589 5.5595 1.9025 16 14 6.4477 5.7296 4.6210 17 1 7.7282 5.8261 5.3668 18 1 5.9203 7.0938 4.3644 19 1 5.4634 4.9614 5.4248 20 8 4.3266 1.4431 1.0900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 7.0877 2.4712 -1.7895 29 1 7.6228 0.9304 -1.0767 30 1 6.5542 0.9289 -2.5002 31 1 6.6083 0.9308 2.4919 32 1 7.6474 0.9301 1.0467 33 1 7.6127 4.1023 0.2223 34 1 8.8054 4.1767 1.5415 35 1 8.7863 2.7813 0.4366 36 1 6.9704 6.5286 1.9425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428212018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:57 Heat of formation + Delta-G solvation = 25.070308 kcal Electronic energy + Delta-G solvation = -17246.716437 eV Core-core repulsion = 14539.893787 eV Total energy + Delta-G solvation = -2706.822649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50305 -35.90670 -35.08209 -34.31190 -32.01153 -30.50053 -28.08036 -27.66924 -25.89784 -24.20555 -22.04804 -21.23258 -20.75038 -19.68286 -16.83370 -16.02876 -15.89115 -15.12385 -14.84524 -14.34749 -13.80873 -13.61481 -13.34632 -13.01859 -12.66769 -12.51444 -12.19572 -11.97866 -11.60396 -11.46869 -11.32334 -11.20811 -10.93793 -10.75850 -10.71346 -10.49626 -10.16766 -10.09342 -10.03245 -9.76837 -8.65341 -7.78075 -6.96088 -5.83984 -3.28477 2.25483 3.30369 3.35764 3.40358 3.41952 3.46229 4.43371 4.52361 4.99501 5.01925 5.23741 5.33623 5.46968 5.52720 5.62126 5.64073 5.72029 5.76922 5.83058 5.96422 6.07967 6.09137 6.25173 6.31144 6.33258 6.41885 6.64264 6.68224 6.92957 7.09207 7.27400 7.63638 7.73530 8.25136 8.50159 9.10062 9.70807 10.17824 11.20414 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.007319 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.669250 B = 3824.709819 C = 4640.615944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.015 4.015 4 C 0.155 3.845 5 N -0.481 5.481 6 C -0.046 4.046 7 C -0.057 4.057 8 C -0.023 4.023 9 C 0.219 3.781 10 N -0.581 5.581 11 C 0.160 3.840 12 C -0.262 4.262 13 H 0.074 0.926 14 C 0.006 3.994 15 N -0.901 5.901 16 Si 0.909 3.091 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.278 1.278 20 O -0.195 6.195 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.004 0.996 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 -9.509 -3.821 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.053 4.053 4 C -0.052 4.052 5 N -0.212 5.212 6 C -0.167 4.167 7 C -0.115 4.115 8 C -0.081 4.081 9 C 0.089 3.911 10 N -0.301 5.301 11 C 0.015 3.985 12 C -0.392 4.392 13 H 0.092 0.908 14 C -0.194 4.194 15 N -0.544 5.544 16 Si 0.739 3.261 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.204 1.204 20 O -0.080 6.080 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.992 -9.273 -4.382 11.878 hybrid contribution -0.101 0.862 1.336 1.593 sum -6.092 -8.411 -3.047 10.824 Atomic orbital electron populations 1.21756 0.95147 1.01798 1.02052 1.21514 0.95900 0.95480 1.02882 1.19947 0.82386 0.98566 1.04445 1.25804 0.95723 1.04040 0.79636 1.70110 1.01955 1.18423 1.30671 1.21262 0.92790 1.10106 0.92508 1.19947 0.92103 1.02350 0.97083 1.25735 0.84137 1.02008 0.96187 1.19736 0.86881 0.89190 0.95277 1.44338 1.47731 1.10116 1.27888 1.20915 0.90941 0.93268 0.93339 1.19298 1.37016 0.89183 0.93681 0.90831 1.25072 1.00297 0.96693 0.97289 1.70101 1.52927 1.05714 1.25671 0.86197 0.78067 0.78839 0.83012 1.21124 1.21627 1.20373 1.84439 1.17098 1.69295 1.37181 0.92489 0.92524 0.92470 0.91340 0.91598 0.89477 0.88545 0.91273 0.91460 0.91912 0.91869 0.90422 0.95008 0.93275 0.97771 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 3 C -0.02 -0.22 5.84 -27.88 -0.16 -0.38 16 4 C 0.16 3.07 7.60 -12.95 -0.10 2.97 16 5 N -0.48 -10.13 11.29 -7.36 -0.08 -10.22 16 6 C -0.05 -0.96 7.11 -82.81 -0.59 -1.55 16 7 C -0.06 -0.98 10.22 36.01 0.37 -0.62 16 8 C -0.02 -0.50 6.97 -35.69 -0.25 -0.75 16 9 C 0.22 4.61 6.04 -5.19 -0.03 4.58 16 10 N -0.58 -14.64 2.91 -182.50 -0.53 -15.17 16 11 C 0.16 3.87 9.02 59.84 0.54 4.41 16 12 C -0.26 -7.26 9.68 -15.06 -0.15 -7.40 16 13 H 0.07 2.00 7.86 -52.48 -0.41 1.58 16 14 C 0.01 0.16 5.06 -17.43 -0.09 0.08 16 15 N -0.90 -26.43 10.67 55.49 0.59 -25.84 16 16 Si 0.91 21.92 29.58 -169.99 -5.03 16.89 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 O -0.19 -4.36 10.78 5.36 0.06 -4.30 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.01 7.16 -51.93 -0.37 0.64 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 32 H 0.08 1.39 6.88 -51.93 -0.36 1.03 16 33 H 0.03 0.85 7.40 -51.93 -0.38 0.47 16 34 H 0.05 1.27 7.21 -51.93 -0.37 0.90 16 35 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -32.22 303.88 -6.32 -38.54 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.66 Total: -3.23 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.25 Total: -1.26 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.02 Total: -51.23 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.06 Total: -4.30 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.22 -6.32 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428212018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.609 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds