Wall clock time and date at job start Sun Mar 29 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50701 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.30254 * 125.61762 * 90.02528 * 4 3 2 6 6 C 1.34479 * 108.69844 * 179.97438 * 5 4 3 7 7 C 1.50701 * 126.16616 * 179.97438 * 6 5 4 8 8 C 1.34335 * 107.67032 * 359.97438 * 6 5 4 9 9 C 1.50699 * 126.44107 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.46895 * 90.00275 * 9 8 6 11 11 C 1.46495 * 120.00132 * 269.99776 * 10 9 8 12 12 C 1.36937 * 120.00124 * 89.99587 * 10 9 8 13 13 H 1.08004 * 119.99802 * 20.36678 * 12 10 9 14 14 C 1.38814 * 120.00306 * 200.36771 * 12 10 9 15 15 N 1.31618 * 119.99669 * 14.98462 * 14 12 10 16 16 Si 1.86799 * 120.00073 * 194.98066 * 14 12 10 17 17 H 1.48497 * 109.47119 * 85.00459 * 16 14 12 18 18 H 1.48496 * 109.46858 * 205.00156 * 16 14 12 19 19 H 1.48497 * 109.47332 * 325.00185 * 16 14 12 20 20 O 1.33965 * 125.61607 * 269.98368 * 4 3 2 21 21 H 1.09002 * 109.46961 * 60.00423 * 1 2 3 22 22 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47533 * 299.99849 * 1 2 3 24 24 H 1.08995 * 109.47533 * 240.00151 * 2 1 3 25 25 H 1.08996 * 109.47309 * 119.99799 * 2 1 3 26 26 H 1.09000 * 109.47204 * 59.99401 * 3 2 1 27 27 H 1.09002 * 109.46943 * 299.99588 * 3 2 1 28 28 H 1.09004 * 109.46959 * 89.97436 * 7 6 5 29 29 H 1.08993 * 109.47604 * 209.97742 * 7 6 5 30 30 H 1.09005 * 109.46949 * 329.98194 * 7 6 5 31 31 H 1.09006 * 109.46778 * 209.99622 * 9 8 6 32 32 H 1.08992 * 109.47585 * 330.00151 * 9 8 6 33 33 H 1.09003 * 109.47307 * 95.08981 * 11 10 9 34 34 H 1.09000 * 109.47146 * 215.09178 * 11 10 9 35 35 H 1.09004 * 109.46967 * 335.08875 * 11 10 9 36 36 H 0.97000 * 119.99805 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4430 -1.0579 6 6 5.5924 1.4435 -0.6660 7 6 6.7977 1.4435 -1.5706 8 6 5.6094 1.4440 0.6772 9 6 6.8330 1.4442 1.5569 10 7 7.2297 2.8255 1.8415 11 6 8.1686 3.5156 0.9537 12 6 6.7227 3.4715 2.9373 13 1 6.3104 2.9020 3.7571 14 6 6.7387 4.8584 2.9944 15 7 6.9589 5.5595 1.9025 16 14 6.4477 5.7296 4.6210 17 1 7.7282 5.8261 5.3668 18 1 5.9203 7.0938 4.3644 19 1 5.4634 4.9614 5.4248 20 8 4.3266 1.4431 1.0900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 7.0877 2.4712 -1.7895 29 1 7.6228 0.9304 -1.0767 30 1 6.5542 0.9289 -2.5002 31 1 6.6083 0.9308 2.4919 32 1 7.6474 0.9301 1.0467 33 1 7.6127 4.1023 0.2223 34 1 8.8054 4.1767 1.5415 35 1 8.7863 2.7813 0.4366 36 1 6.9704 6.5286 1.9425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428212018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:56 Heat of formation + Delta-G solvation = 3.751640 kcal Electronic energy + Delta-G solvation = -17247.640883 eV Core-core repulsion = 14539.893787 eV Total energy + Delta-G solvation = -2707.747096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.12128 -37.73813 -36.24953 -35.90620 -33.84147 -32.14080 -29.49182 -29.07365 -27.91648 -25.78366 -23.48353 -22.83057 -22.18248 -21.25884 -18.85387 -17.68974 -17.48216 -16.80741 -16.12250 -15.78083 -15.51393 -15.37356 -14.95710 -14.22488 -14.08459 -13.95169 -13.82110 -13.19352 -13.12050 -12.87356 -12.85131 -12.60898 -12.57574 -12.33856 -12.23854 -12.08903 -11.97178 -11.73713 -11.62908 -11.42920 -10.72719 -9.41166 -8.96342 -7.92739 -5.40587 0.63786 1.43108 1.44344 1.52788 1.75467 1.94758 2.45943 3.12447 3.25292 3.67921 3.93468 4.03322 4.04903 4.11067 4.25127 4.43084 4.58916 4.66719 4.68333 4.76835 4.83658 4.86930 4.92955 4.93786 5.09466 5.21146 5.24940 5.27745 5.32910 5.42050 5.55416 5.58921 5.68111 6.21150 6.89195 7.04379 7.72409 8.14059 9.10059 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.007319 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.669250 B = 3824.709819 C = 4640.615944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.018 4.018 4 C 0.160 3.840 5 N -0.505 5.505 6 C -0.048 4.048 7 C -0.056 4.056 8 C -0.056 4.056 9 C 0.221 3.779 10 N -0.598 5.598 11 C 0.176 3.824 12 C -0.271 4.271 13 H 0.073 0.927 14 C -0.049 4.049 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.277 1.277 18 H -0.296 1.296 19 H -0.271 1.271 20 O -0.218 6.218 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.113 0.887 33 H -0.002 1.002 34 H 0.023 0.977 35 H 0.046 0.954 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -10.736 -3.846 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.056 4.056 4 C -0.047 4.047 5 N -0.235 5.235 6 C -0.168 4.168 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.093 3.907 10 N -0.319 5.319 11 C 0.031 3.969 12 C -0.401 4.401 13 H 0.091 0.909 14 C -0.245 4.245 15 N -0.580 5.580 16 Si 0.799 3.201 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.196 1.196 20 O -0.104 6.104 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.017 0.983 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.719 -10.542 -4.413 13.257 hybrid contribution 0.047 1.115 1.271 1.692 sum -6.672 -9.428 -3.141 11.969 Atomic orbital electron populations 1.21726 0.92709 1.02963 1.02796 1.21461 0.97849 0.93351 1.02330 1.20308 0.79055 1.00694 1.05530 1.26978 0.97531 1.01396 0.78768 1.70178 1.02309 1.19877 1.31175 1.21894 0.93862 1.08218 0.92833 1.20067 0.91362 1.02352 0.97530 1.25682 0.84363 1.04411 0.96743 1.19860 0.87704 0.87199 0.95971 1.44474 1.48409 1.11250 1.27786 1.20652 0.90436 0.93630 0.92162 1.19584 1.36150 0.89607 0.94741 0.90932 1.25828 1.00918 0.97443 1.00268 1.70270 1.54866 1.05394 1.27455 0.85224 0.78180 0.77257 0.79442 1.20348 1.22221 1.19557 1.84411 1.17719 1.69872 1.38420 0.91632 0.91180 0.91872 0.91866 0.92210 0.88532 0.87207 0.92131 0.89114 0.90094 0.91421 0.86942 0.98321 0.95828 0.93597 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 3 C -0.02 -0.49 5.84 29.85 0.17 -0.31 16 4 C 0.16 6.24 7.60 88.34 0.67 6.91 16 5 N -0.50 -20.86 11.29 -291.98 -3.30 -24.16 16 6 C -0.05 -1.96 7.11 41.26 0.29 -1.67 16 7 C -0.06 -1.81 10.22 71.24 0.73 -1.08 16 8 C -0.06 -2.42 6.97 24.79 0.17 -2.24 16 9 C 0.22 9.02 6.04 85.63 0.52 9.54 16 10 N -0.60 -29.98 2.91 -731.31 -2.13 -32.11 16 11 C 0.18 8.51 9.02 127.77 1.15 9.66 16 12 C -0.27 -15.03 9.68 84.03 0.81 -14.22 16 13 H 0.07 3.94 7.86 -2.91 -0.02 3.92 16 14 C -0.05 -2.77 5.06 84.86 0.43 -2.34 16 15 N -0.93 -56.05 10.67 21.65 0.23 -55.82 16 16 Si 0.97 45.44 29.58 68.60 2.03 47.47 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 O -0.22 -9.69 10.78 -3.75 -0.04 -9.73 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 27 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.09 2.46 7.16 -2.39 -0.02 2.44 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 32 H 0.11 3.71 6.88 -2.39 -0.02 3.70 16 33 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 16 34 H 0.02 1.22 7.21 -2.39 -0.02 1.20 16 35 H 0.05 1.79 7.84 -2.39 -0.02 1.77 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.81 303.88 3.69 -66.13 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.05 Total: 7.81 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.85 Total: 0.42 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -5.19 Total: -112.10 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.04 Total: -9.73 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.81 3.69 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428212018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.879 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds