Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47174 * 2 1 4 4 N 1.30260 * 125.61867 * 89.97988 * 3 2 1 5 5 C 1.34476 * 108.69690 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.15979 * 180.02562 * 5 4 3 7 7 C 1.34324 * 107.67515 * 359.97438 * 5 4 3 8 8 C 1.50692 * 126.44713 * 180.02562 * 7 5 4 9 9 N 1.46499 * 109.47715 * 89.98144 * 8 7 5 10 10 C 1.36937 * 119.99751 * 270.00416 * 9 8 7 11 11 H 1.08001 * 119.99837 * 323.05561 * 10 9 8 12 12 C 1.38816 * 120.00242 * 143.05964 * 10 9 8 13 13 N 1.31620 * 120.00057 * 157.11888 * 12 10 9 14 14 Si 1.86799 * 119.99670 * 337.12102 * 12 10 9 15 15 H 1.48501 * 109.47230 * 95.67165 * 14 12 10 16 16 H 1.48493 * 109.47061 * 215.66897 * 14 12 10 17 17 H 1.48497 * 109.47057 * 335.67230 * 14 12 10 18 18 C 1.46498 * 119.99935 * 89.99953 * 9 8 7 19 19 C 1.52999 * 109.47160 * 83.80390 * 18 9 8 20 20 O 1.33971 * 125.61935 * 269.99538 * 3 2 1 21 21 H 1.09002 * 109.46571 * 300.00183 * 1 2 3 22 22 H 1.08997 * 109.47056 * 59.99587 * 1 2 3 23 23 H 1.09001 * 109.47654 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46571 * 239.99817 * 2 1 3 25 25 H 1.08997 * 109.47056 * 120.00413 * 2 1 3 26 26 H 1.09003 * 109.46741 * 269.97207 * 6 5 4 27 27 H 1.08994 * 109.47360 * 29.97695 * 6 5 4 28 28 H 1.09008 * 109.46968 * 149.97736 * 6 5 4 29 29 H 1.09007 * 109.47446 * 209.98364 * 8 7 5 30 30 H 1.09004 * 109.47316 * 329.97660 * 8 7 5 31 31 H 0.96993 * 119.99579 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46430 * 203.79995 * 18 9 8 33 33 H 1.08997 * 109.47208 * 323.79805 * 18 9 8 34 34 H 1.09001 * 109.46699 * 299.99460 * 19 18 9 35 35 H 1.08997 * 109.47538 * 59.99616 * 19 18 9 36 36 H 1.08996 * 109.47007 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2849 2.1361 1.0589 5 6 2.7133 3.3492 0.6675 6 6 3.1150 4.4852 1.5727 7 6 2.7199 3.3656 -0.6756 8 6 3.1282 4.5193 -1.5549 9 7 4.5628 4.4332 -1.8388 10 6 5.4631 5.0456 -1.0083 11 1 5.2234 5.9990 -0.5611 12 6 6.6838 4.4410 -0.7412 13 7 7.7057 5.1689 -0.3435 14 14 6.8760 2.5942 -0.9462 15 1 7.4421 2.3013 -2.2874 16 1 7.7898 2.0724 0.1015 17 1 5.5488 1.9410 -0.8156 18 6 5.0343 3.6919 -3.0111 19 6 4.9668 4.5933 -4.2456 20 8 2.2925 2.1563 -1.0891 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2429 5.1016 1.7909 27 1 3.5180 4.0838 2.5025 28 1 3.8745 5.0918 1.0794 29 1 2.5697 4.4790 -2.4901 30 1 2.9145 5.4585 -1.0445 31 1 8.5587 4.7464 -0.1573 32 1 6.0642 3.3736 -2.8495 33 1 4.4034 2.8166 -3.1654 34 1 3.9369 4.9117 -4.4070 35 1 5.5977 5.4687 -4.0913 36 1 5.3180 4.0419 -5.1177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428221863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = 29.286071 kcal Electronic energy + Delta-G solvation = -17723.637009 eV Core-core repulsion = 15016.997169 eV Total energy + Delta-G solvation = -2706.639840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.63309 -36.48399 -34.48799 -33.97579 -31.92833 -31.09685 -29.29594 -27.58254 -25.53678 -23.70622 -22.95425 -21.11983 -20.75653 -19.66122 -16.84598 -16.21575 -15.99891 -15.31428 -14.58473 -14.41356 -14.19740 -13.60489 -13.30401 -12.75968 -12.60523 -12.56974 -12.39355 -12.03999 -11.83219 -11.67972 -11.43979 -11.41223 -11.13941 -11.07372 -10.62468 -10.46469 -10.24832 -9.90378 -9.81185 -9.60811 -8.65952 -7.84445 -7.05945 -6.11787 -3.53254 2.11463 3.23299 3.27151 3.31594 3.43029 3.51262 4.43697 4.45594 4.94280 5.04185 5.18199 5.24185 5.32976 5.57634 5.65926 5.72119 5.78396 5.87298 5.94261 6.07786 6.12232 6.20900 6.22454 6.33452 6.38749 6.46486 6.61107 6.67206 6.73628 6.80890 6.99387 7.10599 7.90885 8.22668 8.40664 8.81559 9.57011 9.94715 11.02449 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.009020 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.866464 B = 3103.455903 C = 3256.320617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C 0.154 3.846 4 N -0.481 5.481 5 C -0.019 4.019 6 C -0.070 4.070 7 C -0.041 4.041 8 C 0.223 3.777 9 N -0.588 5.588 10 C -0.272 4.272 11 H 0.087 0.913 12 C 0.045 3.955 13 N -0.890 5.890 14 Si 0.873 3.127 15 H -0.285 1.285 16 H -0.300 1.300 17 H -0.271 1.271 18 C 0.128 3.872 19 C -0.161 4.161 20 O -0.206 6.206 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -6.215 -2.221 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 C -0.053 4.053 4 N -0.212 5.212 5 C -0.139 4.139 6 C -0.127 4.127 7 C -0.097 4.097 8 C 0.095 3.905 9 N -0.308 5.308 10 C -0.400 4.400 11 H 0.104 0.896 12 C -0.157 4.157 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.213 1.213 16 H -0.227 1.227 17 H -0.196 1.196 18 C 0.003 3.997 19 C -0.220 4.220 20 O -0.093 6.093 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.372 -6.401 -1.614 13.150 hybrid contribution 0.501 -1.088 -0.589 1.335 sum -10.871 -7.489 -2.203 13.384 Atomic orbital electron populations 1.21753 0.93680 1.02213 1.02766 1.19861 0.96333 0.85246 1.04353 1.25878 1.02863 0.96911 0.79620 1.70177 1.16432 1.03994 1.30563 1.21380 1.05545 0.94386 0.92626 1.20144 1.01220 0.93537 0.97825 1.25473 1.01003 0.86639 0.96606 1.19761 0.86056 0.89965 0.94727 1.44446 1.00697 1.60952 1.24748 1.18784 0.95359 1.00908 1.24983 0.89598 1.25442 0.96247 0.97106 0.96914 1.69848 1.01034 1.35066 1.47028 0.86997 0.77890 0.88536 0.76262 1.21328 1.22739 1.19553 1.21165 0.98647 0.93094 0.86753 1.22192 1.00983 1.01270 0.97546 1.84368 1.64118 1.23286 1.37515 0.91947 0.92331 0.91490 0.89651 0.88439 0.92224 0.91807 0.88633 0.92235 0.89113 0.92489 0.92349 0.94661 0.93668 0.91994 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 37.16 0.37 -1.19 16 2 C -0.02 -0.26 6.56 -27.89 -0.18 -0.44 16 3 C 0.15 2.91 7.60 -12.95 -0.10 2.81 16 4 N -0.48 -10.09 11.29 -7.36 -0.08 -10.17 16 5 C -0.02 -0.40 7.11 -82.81 -0.59 -0.99 16 6 C -0.07 -1.33 10.05 36.01 0.36 -0.97 16 7 C -0.04 -0.86 6.97 -35.69 -0.25 -1.11 16 8 C 0.22 4.40 5.84 -5.20 -0.03 4.37 16 9 N -0.59 -13.55 2.07 -174.61 -0.36 -13.91 16 10 C -0.27 -7.20 8.77 -15.06 -0.13 -7.33 16 11 H 0.09 2.38 7.91 -52.49 -0.42 1.97 16 12 C 0.05 1.27 5.26 -17.43 -0.09 1.18 16 13 N -0.89 -26.38 13.97 55.49 0.78 -25.61 16 14 Si 0.87 22.80 25.05 -169.99 -4.26 18.55 16 15 H -0.29 -7.19 6.68 56.52 0.38 -6.82 16 16 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 17 H -0.27 -7.35 7.11 56.52 0.40 -6.95 16 18 C 0.13 2.79 5.01 -4.04 -0.02 2.77 16 19 C -0.16 -2.94 10.23 37.16 0.38 -2.56 16 20 O -0.21 -4.25 10.78 5.34 0.06 -4.19 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 1.96 6.45 -51.92 -0.33 1.63 16 29 H 0.06 1.04 8.05 -51.92 -0.42 0.62 16 30 H 0.09 1.67 7.69 -51.93 -0.40 1.27 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.06 1.40 3.56 -51.93 -0.18 1.22 16 33 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.04 0.75 8.12 -51.93 -0.42 0.32 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -31.62 298.83 -5.21 -36.83 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.56 Total: -2.54 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.28 Total: -3.46 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.33 Total: -49.69 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.06 Total: -4.19 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.26 Total: 18.55 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.62 -5.21 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428221863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.116 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds