Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47174 * 2 1 4 4 N 1.30260 * 125.61867 * 89.97988 * 3 2 1 5 5 C 1.34476 * 108.69690 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.15979 * 180.02562 * 5 4 3 7 7 C 1.34324 * 107.67515 * 359.97438 * 5 4 3 8 8 C 1.50692 * 126.44713 * 180.02562 * 7 5 4 9 9 N 1.46499 * 109.47715 * 89.98144 * 8 7 5 10 10 C 1.36937 * 119.99751 * 270.00416 * 9 8 7 11 11 H 1.08001 * 119.99837 * 323.05561 * 10 9 8 12 12 C 1.38816 * 120.00242 * 143.05964 * 10 9 8 13 13 N 1.31620 * 120.00057 * 157.11888 * 12 10 9 14 14 Si 1.86799 * 119.99670 * 337.12102 * 12 10 9 15 15 H 1.48501 * 109.47230 * 95.67165 * 14 12 10 16 16 H 1.48493 * 109.47061 * 215.66897 * 14 12 10 17 17 H 1.48497 * 109.47057 * 335.67230 * 14 12 10 18 18 C 1.46498 * 119.99935 * 89.99953 * 9 8 7 19 19 C 1.52999 * 109.47160 * 83.80390 * 18 9 8 20 20 O 1.33971 * 125.61935 * 269.99538 * 3 2 1 21 21 H 1.09002 * 109.46571 * 300.00183 * 1 2 3 22 22 H 1.08997 * 109.47056 * 59.99587 * 1 2 3 23 23 H 1.09001 * 109.47654 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46571 * 239.99817 * 2 1 3 25 25 H 1.08997 * 109.47056 * 120.00413 * 2 1 3 26 26 H 1.09003 * 109.46741 * 269.97207 * 6 5 4 27 27 H 1.08994 * 109.47360 * 29.97695 * 6 5 4 28 28 H 1.09008 * 109.46968 * 149.97736 * 6 5 4 29 29 H 1.09007 * 109.47446 * 209.98364 * 8 7 5 30 30 H 1.09004 * 109.47316 * 329.97660 * 8 7 5 31 31 H 0.96993 * 119.99579 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46430 * 203.79995 * 18 9 8 33 33 H 1.08997 * 109.47208 * 323.79805 * 18 9 8 34 34 H 1.09001 * 109.46699 * 299.99460 * 19 18 9 35 35 H 1.08997 * 109.47538 * 59.99616 * 19 18 9 36 36 H 1.08996 * 109.47007 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2849 2.1361 1.0589 5 6 2.7133 3.3492 0.6675 6 6 3.1150 4.4852 1.5727 7 6 2.7199 3.3656 -0.6756 8 6 3.1282 4.5193 -1.5549 9 7 4.5628 4.4332 -1.8388 10 6 5.4631 5.0456 -1.0083 11 1 5.2234 5.9990 -0.5611 12 6 6.6838 4.4410 -0.7412 13 7 7.7057 5.1689 -0.3435 14 14 6.8760 2.5942 -0.9462 15 1 7.4421 2.3013 -2.2874 16 1 7.7898 2.0724 0.1015 17 1 5.5488 1.9410 -0.8156 18 6 5.0343 3.6919 -3.0111 19 6 4.9668 4.5933 -4.2456 20 8 2.2925 2.1563 -1.0891 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2429 5.1016 1.7909 27 1 3.5180 4.0838 2.5025 28 1 3.8745 5.0918 1.0794 29 1 2.5697 4.4790 -2.4901 30 1 2.9145 5.4585 -1.0445 31 1 8.5587 4.7464 -0.1573 32 1 6.0642 3.3736 -2.8495 33 1 4.4034 2.8166 -3.1654 34 1 3.9369 4.9117 -4.4070 35 1 5.5977 5.4687 -4.0913 36 1 5.3180 4.0419 -5.1177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428221863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = 7.606567 kcal Electronic energy + Delta-G solvation = -17724.577103 eV Core-core repulsion = 15016.997169 eV Total energy + Delta-G solvation = -2707.579934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.17919 -38.26103 -36.03549 -35.17949 -33.95788 -32.56142 -30.88082 -29.29289 -26.97520 -25.36787 -24.38816 -22.82135 -22.24028 -21.22981 -18.80633 -17.79139 -17.61239 -17.13667 -16.13571 -15.83168 -15.61650 -15.16733 -14.95493 -14.52716 -14.11526 -14.04582 -13.81390 -13.61678 -13.43744 -13.04568 -12.96095 -12.93294 -12.60460 -12.45151 -12.29380 -12.08442 -11.83669 -11.77254 -11.51663 -11.41365 -10.74075 -9.41909 -8.96424 -8.27256 -5.63118 0.57640 1.16395 1.29949 1.38639 1.72458 1.85927 2.31718 3.00021 3.11824 3.33710 3.94608 4.04532 4.13879 4.22706 4.24438 4.31330 4.46312 4.59649 4.65429 4.75832 4.77388 4.79990 4.91995 4.97488 5.02300 5.05728 5.13776 5.15703 5.24873 5.29600 5.47612 5.57955 5.88116 6.12807 6.83924 6.88323 7.52082 7.94118 8.91415 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.009020 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.866464 B = 3103.455903 C = 3256.320617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C 0.164 3.836 4 N -0.512 5.512 5 C -0.035 4.035 6 C -0.065 4.065 7 C -0.061 4.061 8 C 0.225 3.775 9 N -0.600 5.600 10 C -0.243 4.243 11 H 0.067 0.933 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.924 3.076 15 H -0.273 1.273 16 H -0.313 1.313 17 H -0.285 1.285 18 C 0.121 3.879 19 C -0.149 4.149 20 O -0.215 6.215 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.263 0.737 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 -7.619 -3.355 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.043 4.043 4 N -0.242 5.242 5 C -0.155 4.155 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.098 3.902 9 N -0.322 5.322 10 C -0.372 4.372 11 H 0.085 0.915 12 C -0.201 4.201 13 N -0.578 5.578 14 Si 0.755 3.245 15 H -0.200 1.200 16 H -0.242 1.242 17 H -0.211 1.211 18 C -0.003 4.003 19 C -0.208 4.208 20 O -0.102 6.102 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.374 -7.812 -2.769 15.734 hybrid contribution 0.934 -0.698 -0.226 1.187 sum -12.441 -8.510 -2.995 15.367 Atomic orbital electron populations 1.21721 0.91461 1.04251 1.02162 1.20274 0.98083 0.81964 1.05856 1.27142 1.00253 0.98236 0.78702 1.70211 1.18104 1.04315 1.31598 1.21777 1.05373 0.95059 0.93298 1.20107 1.01820 0.93192 0.97066 1.25430 1.02373 0.87236 0.96619 1.19838 0.84139 0.90013 0.96163 1.44535 1.01628 1.61019 1.24979 1.18724 0.95377 0.99935 1.23196 0.91529 1.25842 0.96608 0.99296 0.98316 1.69928 1.01532 1.35985 1.50324 0.86179 0.76489 0.85565 0.76231 1.20027 1.24167 1.21095 1.21258 0.97299 0.94159 0.87581 1.22058 1.02077 0.99966 0.96744 1.84359 1.64391 1.23284 1.38168 0.92945 0.92527 0.88135 0.87697 0.87325 0.89338 0.92082 0.90598 0.89352 0.88157 0.92796 0.94877 0.93535 0.91554 0.93926 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 71.98 0.71 -1.77 16 2 C -0.02 -0.56 6.56 29.85 0.20 -0.36 16 3 C 0.16 5.88 7.60 88.34 0.67 6.55 16 4 N -0.51 -20.90 11.29 -291.98 -3.30 -24.20 16 5 C -0.04 -1.48 7.11 41.26 0.29 -1.18 16 6 C -0.06 -2.43 10.05 71.24 0.72 -1.72 16 7 C -0.06 -2.48 6.97 24.79 0.17 -2.31 16 8 C 0.23 8.49 5.84 85.63 0.50 8.99 16 9 N -0.60 -27.00 2.07 -706.34 -1.46 -28.46 16 10 C -0.24 -12.90 8.77 84.03 0.74 -12.16 16 11 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 12 C 0.00 -0.17 5.26 84.86 0.45 0.28 16 13 N -0.93 -56.74 13.97 21.65 0.30 -56.44 16 14 Si 0.92 47.93 25.05 68.60 1.72 49.65 16 15 H -0.27 -13.40 6.68 99.48 0.66 -12.74 16 16 H -0.31 -16.67 7.11 99.48 0.71 -15.96 16 17 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 18 C 0.12 5.06 5.01 86.38 0.43 5.49 16 19 C -0.15 -5.08 10.23 71.98 0.74 -4.34 16 20 O -0.21 -8.42 10.78 -3.80 -0.04 -8.47 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.08 3.14 6.45 -2.38 -0.02 3.13 16 29 H 0.09 2.81 8.05 -2.38 -0.02 2.79 16 30 H 0.10 3.54 7.69 -2.39 -0.02 3.52 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.03 1.55 3.56 -2.38 -0.01 1.54 16 33 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 34 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -68.44 298.83 3.84 -64.60 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.01 Total: 5.85 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.61 Total: -2.54 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.46 Total: -109.10 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.04 Total: -8.47 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.72 Total: 49.65 kcal Total: -68.44 3.84 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428221863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.207 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds