Wall clock time and date at job start Sun Mar 29 2020 22:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34478 * 126.16445 * 2 1 4 4 C 1.30253 * 108.70202 * 179.74176 * 3 2 1 5 5 C 1.50703 * 125.61874 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46931 * 299.96892 * 5 4 3 7 7 C 1.52995 * 109.47557 * 59.97089 * 5 4 3 8 8 O 1.33966 * 108.76120 * 359.97438 * 4 3 2 9 9 C 1.34326 * 126.16865 * 179.69667 * 2 1 3 10 10 C 1.50704 * 126.44113 * 0.27425 * 9 2 1 11 11 N 1.46496 * 109.46795 * 90.00618 * 10 9 2 12 12 C 1.46502 * 120.00093 * 269.99975 * 11 10 9 13 13 C 1.36938 * 120.00295 * 90.00210 * 11 10 9 14 14 H 1.08002 * 119.99974 * 22.20490 * 13 11 10 15 15 C 1.38811 * 120.00255 * 202.21459 * 13 11 10 16 16 N 1.31621 * 119.99846 * 11.28217 * 15 13 11 17 17 Si 1.86797 * 120.00011 * 191.29116 * 15 13 11 18 18 H 1.48497 * 109.47403 * 89.99598 * 17 15 13 19 19 H 1.48509 * 109.47198 * 209.99665 * 17 15 13 20 20 H 1.48494 * 109.47161 * 329.99305 * 17 15 13 21 21 H 1.08996 * 109.47106 * 90.02231 * 1 2 3 22 22 H 1.08997 * 109.46732 * 210.02361 * 1 2 3 23 23 H 1.08994 * 109.46844 * 330.02148 * 1 2 3 24 24 H 1.08997 * 109.47238 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47154 * 179.97438 * 6 5 4 26 26 H 1.08999 * 109.47490 * 300.00323 * 6 5 4 27 27 H 1.09006 * 109.47166 * 60.00646 * 6 5 4 28 28 H 1.09007 * 109.47153 * 59.99550 * 7 5 4 29 29 H 1.08996 * 109.47602 * 180.02562 * 7 5 4 30 30 H 1.09007 * 109.46989 * 300.00270 * 7 5 4 31 31 H 1.08998 * 109.46948 * 210.00582 * 10 9 2 32 32 H 1.08997 * 109.46977 * 330.00607 * 10 9 2 33 33 H 1.08993 * 109.47160 * 94.39845 * 12 11 10 34 34 H 1.09004 * 109.47005 * 214.40133 * 12 11 10 35 35 H 1.08999 * 109.47193 * 334.39965 * 12 11 10 36 36 H 0.97001 * 119.99424 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7480 1.6001 0.0081 6 6 4.7275 2.4797 -1.2436 7 6 4.7175 2.4864 1.2548 8 8 3.5735 -0.6445 0.0098 9 6 2.2998 -1.0844 0.0057 10 6 1.8494 -2.5225 0.0076 11 7 1.7089 -2.9919 -1.3731 12 6 0.4280 -2.8474 -2.0692 13 6 2.7750 -3.5658 -2.0130 14 1 3.5804 -3.9989 -1.4384 15 6 2.8205 -3.5906 -3.4001 16 7 1.9642 -2.8765 -4.0996 17 14 4.0971 -4.6375 -4.2741 18 1 3.5435 -5.9941 -4.5157 19 1 4.4488 -4.0080 -5.5724 20 1 5.3137 -4.7425 -3.4292 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 5.6557 0.9968 0.0133 25 1 5.5988 3.1348 -1.2416 26 1 4.7493 1.8483 -2.1319 27 1 3.8198 3.0832 -1.2489 28 1 4.7319 1.8597 2.1466 29 1 5.5886 3.1414 1.2564 30 1 3.8096 3.0897 1.2495 31 1 2.5881 -3.1339 0.5258 32 1 0.8895 -2.6020 0.5178 33 1 0.4314 -1.9243 -2.6485 34 1 0.2801 -3.6956 -2.7378 35 1 -0.3807 -2.8151 -1.3390 36 1 1.9959 -2.8942 -5.0689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428253817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:55 Heat of formation + Delta-G solvation = 27.700405 kcal Electronic energy + Delta-G solvation = -17512.908856 eV Core-core repulsion = 14806.200256 eV Total energy + Delta-G solvation = -2706.708600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50455 -35.98793 -35.30852 -34.24558 -31.82608 -30.06521 -27.82891 -27.08201 -25.90424 -25.20161 -22.68203 -21.26149 -20.12918 -19.60307 -16.82120 -16.13414 -15.93344 -14.99328 -14.42153 -14.32892 -13.68794 -13.59293 -13.17079 -12.93118 -12.63522 -12.50739 -12.10201 -11.98866 -11.53993 -11.48583 -11.23857 -11.15704 -10.94580 -10.83916 -10.74156 -10.47875 -10.14432 -10.08490 -10.03515 -9.73024 -8.65293 -7.76737 -6.93632 -5.83360 -3.29992 2.27754 3.31051 3.37094 3.40142 3.41936 3.43186 4.43128 4.53038 5.03409 5.19454 5.26190 5.36573 5.51963 5.59988 5.67020 5.68716 5.79252 5.88259 5.93832 5.97412 6.09888 6.22455 6.32290 6.33867 6.37257 6.44159 6.66492 6.70737 6.94899 7.11598 7.29609 7.65548 7.73951 8.26805 8.52292 9.11172 9.70967 10.18690 11.20772 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.008112 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.959960 B = 3451.009465 C = 4126.043781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.046 4.046 3 N -0.476 5.476 4 C 0.158 3.842 5 C 0.010 3.990 6 C -0.142 4.142 7 C -0.139 4.139 8 O -0.196 6.196 9 C -0.023 4.023 10 C 0.219 3.781 11 N -0.581 5.581 12 C 0.161 3.839 13 C -0.262 4.262 14 H 0.073 0.927 15 C 0.006 3.994 16 N -0.901 5.901 17 Si 0.910 3.090 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.278 1.278 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.002 0.998 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 6.853 8.520 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.167 4.167 3 N -0.207 5.207 4 C -0.049 4.049 5 C -0.010 4.010 6 C -0.199 4.199 7 C -0.196 4.196 8 O -0.081 6.081 9 C -0.081 4.081 10 C 0.089 3.911 11 N -0.301 5.301 12 C 0.017 3.983 13 C -0.391 4.391 14 H 0.091 0.909 15 C -0.193 4.193 16 N -0.545 5.545 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.203 1.203 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.021 0.979 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.439 7.413 8.288 11.212 hybrid contribution 0.936 -1.033 -0.847 1.631 sum 2.374 6.379 7.440 10.084 Atomic orbital electron populations 1.19938 0.87491 1.01697 1.02313 1.21255 0.97376 0.87903 1.10120 1.70044 1.00519 1.31833 1.18289 1.25798 0.95063 0.80067 1.03972 1.19422 0.90999 0.93135 0.97416 1.21812 1.02492 0.99324 0.96310 1.21793 1.02638 0.99205 0.95992 1.84444 1.31328 1.23043 1.69296 1.25707 0.79762 1.00543 1.02103 1.19734 0.98513 0.83582 0.89238 1.44295 1.09729 1.65830 1.10235 1.20913 0.82961 1.01303 0.93152 1.19307 1.00916 1.29683 0.89224 0.90896 1.25125 0.98503 0.98820 0.96841 1.70084 1.38009 1.40682 1.05734 0.86174 0.81065 0.79804 0.79045 1.21172 1.21610 1.20298 0.91313 0.91499 0.91938 0.89166 0.91704 0.92169 0.91509 0.92557 0.91675 0.91485 0.91934 0.90470 0.95091 0.93129 0.97943 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.22 36.01 0.37 -0.61 16 2 C -0.05 -0.96 7.11 -82.81 -0.59 -1.55 16 3 N -0.48 -9.90 11.29 -7.36 -0.08 -9.99 16 4 C 0.16 3.14 6.85 -12.95 -0.09 3.05 16 5 C 0.01 0.15 3.39 -91.77 -0.31 -0.16 16 6 C -0.14 -1.95 9.18 37.16 0.34 -1.60 16 7 C -0.14 -1.66 9.18 37.15 0.34 -1.32 16 8 O -0.20 -4.41 10.78 5.37 0.06 -4.35 16 9 C -0.02 -0.52 6.97 -35.69 -0.25 -0.77 16 10 C 0.22 4.62 6.04 -5.19 -0.03 4.59 16 11 N -0.58 -14.66 2.91 -182.50 -0.53 -15.19 16 12 C 0.16 3.91 9.01 59.85 0.54 4.45 16 13 C -0.26 -7.26 9.68 -15.06 -0.15 -7.40 16 14 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 15 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 16 N -0.90 -26.42 10.57 55.49 0.59 -25.83 16 17 Si 0.91 21.97 29.57 -169.99 -5.03 16.95 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.07 1.01 7.16 -51.93 -0.37 0.64 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 32 H 0.08 1.39 6.88 -51.93 -0.36 1.03 16 33 H 0.03 0.83 7.41 -51.93 -0.38 0.44 16 34 H 0.05 1.31 7.19 -51.93 -0.37 0.94 16 35 H 0.00 0.04 7.84 -51.93 -0.41 -0.36 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -31.99 303.13 -6.00 -38.00 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.66 Total: -2.94 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 0.09 Total: -1.22 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.03 Total: -51.00 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.06 Total: -4.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.99 -6.00 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428253817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.698 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds