Wall clock time and date at job start Sun Mar 29 2020 22:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34478 * 126.16445 * 2 1 4 4 C 1.30253 * 108.70202 * 179.74176 * 3 2 1 5 5 C 1.50703 * 125.61874 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46931 * 299.96892 * 5 4 3 7 7 C 1.52995 * 109.47557 * 59.97089 * 5 4 3 8 8 O 1.33966 * 108.76120 * 359.97438 * 4 3 2 9 9 C 1.34326 * 126.16865 * 179.69667 * 2 1 3 10 10 C 1.50704 * 126.44113 * 0.27425 * 9 2 1 11 11 N 1.46496 * 109.46795 * 90.00618 * 10 9 2 12 12 C 1.46502 * 120.00093 * 269.99975 * 11 10 9 13 13 C 1.36938 * 120.00295 * 90.00210 * 11 10 9 14 14 H 1.08002 * 119.99974 * 22.20490 * 13 11 10 15 15 C 1.38811 * 120.00255 * 202.21459 * 13 11 10 16 16 N 1.31621 * 119.99846 * 11.28217 * 15 13 11 17 17 Si 1.86797 * 120.00011 * 191.29116 * 15 13 11 18 18 H 1.48497 * 109.47403 * 89.99598 * 17 15 13 19 19 H 1.48509 * 109.47198 * 209.99665 * 17 15 13 20 20 H 1.48494 * 109.47161 * 329.99305 * 17 15 13 21 21 H 1.08996 * 109.47106 * 90.02231 * 1 2 3 22 22 H 1.08997 * 109.46732 * 210.02361 * 1 2 3 23 23 H 1.08994 * 109.46844 * 330.02148 * 1 2 3 24 24 H 1.08997 * 109.47238 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47154 * 179.97438 * 6 5 4 26 26 H 1.08999 * 109.47490 * 300.00323 * 6 5 4 27 27 H 1.09006 * 109.47166 * 60.00646 * 6 5 4 28 28 H 1.09007 * 109.47153 * 59.99550 * 7 5 4 29 29 H 1.08996 * 109.47602 * 180.02562 * 7 5 4 30 30 H 1.09007 * 109.46989 * 300.00270 * 7 5 4 31 31 H 1.08998 * 109.46948 * 210.00582 * 10 9 2 32 32 H 1.08997 * 109.46977 * 330.00607 * 10 9 2 33 33 H 1.08993 * 109.47160 * 94.39845 * 12 11 10 34 34 H 1.09004 * 109.47005 * 214.40133 * 12 11 10 35 35 H 1.08999 * 109.47193 * 334.39965 * 12 11 10 36 36 H 0.97001 * 119.99424 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7480 1.6001 0.0081 6 6 4.7275 2.4797 -1.2436 7 6 4.7175 2.4864 1.2548 8 8 3.5735 -0.6445 0.0098 9 6 2.2998 -1.0844 0.0057 10 6 1.8494 -2.5225 0.0076 11 7 1.7089 -2.9919 -1.3731 12 6 0.4280 -2.8474 -2.0692 13 6 2.7750 -3.5658 -2.0130 14 1 3.5804 -3.9989 -1.4384 15 6 2.8205 -3.5906 -3.4001 16 7 1.9642 -2.8765 -4.0996 17 14 4.0971 -4.6375 -4.2741 18 1 3.5435 -5.9941 -4.5157 19 1 4.4488 -4.0080 -5.5724 20 1 5.3137 -4.7425 -3.4292 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 5.6557 0.9968 0.0133 25 1 5.5988 3.1348 -1.2416 26 1 4.7493 1.8483 -2.1319 27 1 3.8198 3.0832 -1.2489 28 1 4.7319 1.8597 2.1466 29 1 5.5886 3.1414 1.2564 30 1 3.8096 3.0897 1.2495 31 1 2.5881 -3.1339 0.5258 32 1 0.8895 -2.6020 0.5178 33 1 0.4314 -1.9243 -2.6485 34 1 0.2801 -3.6956 -2.7378 35 1 -0.3807 -2.8151 -1.3390 36 1 1.9959 -2.8942 -5.0689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428253817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:54 Heat of formation + Delta-G solvation = 6.266102 kcal Electronic energy + Delta-G solvation = -17513.838317 eV Core-core repulsion = 14806.200256 eV Total energy + Delta-G solvation = -2707.638061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.11821 -37.76398 -36.65773 -35.84430 -33.73608 -31.72355 -29.46366 -28.10616 -27.92230 -26.77838 -24.28193 -23.01990 -21.70701 -21.06345 -18.85084 -17.67874 -17.58292 -16.86120 -15.96491 -15.71096 -15.44671 -15.20720 -14.86270 -14.15383 -14.00400 -13.98558 -13.83591 -13.14269 -13.08351 -12.92587 -12.86460 -12.66698 -12.57228 -12.34183 -12.26078 -12.11545 -11.99831 -11.94054 -11.69496 -11.36312 -10.73595 -9.39941 -8.94382 -7.92719 -5.42643 0.65873 1.42108 1.42867 1.51942 1.78573 1.93289 2.44919 3.11917 3.25923 3.68414 3.87113 4.00641 4.09378 4.11682 4.23266 4.38085 4.67464 4.73262 4.76350 4.78080 4.81196 4.84489 4.89595 4.92435 5.01921 5.17753 5.27644 5.28562 5.31273 5.35652 5.55381 5.62286 5.69104 6.21931 6.91563 7.04831 7.72064 8.14281 9.09749 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.008112 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.959960 B = 3451.009465 C = 4126.043781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.048 4.048 3 N -0.496 5.496 4 C 0.162 3.838 5 C 0.003 3.997 6 C -0.136 4.136 7 C -0.129 4.129 8 O -0.220 6.220 9 C -0.057 4.057 10 C 0.221 3.779 11 N -0.598 5.598 12 C 0.177 3.823 13 C -0.271 4.271 14 H 0.072 0.928 15 C -0.049 4.049 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.270 1.270 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.112 0.888 33 H -0.002 1.002 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 7.521 9.824 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.168 4.168 3 N -0.226 5.226 4 C -0.045 4.045 5 C -0.016 4.016 6 C -0.194 4.194 7 C -0.187 4.187 8 O -0.107 6.107 9 C -0.113 4.113 10 C 0.093 3.907 11 N -0.319 5.319 12 C 0.033 3.967 13 C -0.401 4.401 14 H 0.090 0.910 15 C -0.244 4.244 16 N -0.580 5.580 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.194 1.194 21 H 0.078 0.922 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.016 0.984 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.139 8.082 9.634 12.756 hybrid contribution 0.742 -1.136 -1.132 1.767 sum 2.880 6.946 8.502 11.350 Atomic orbital electron populations 1.20053 0.85089 1.03809 1.02283 1.21888 0.99078 0.87622 1.08210 1.70109 1.01059 1.31905 1.19560 1.27030 0.96511 0.79622 1.01385 1.19852 0.89374 0.93086 0.99322 1.21798 1.03893 0.99062 0.94626 1.21759 1.03840 0.98886 0.94210 1.84415 1.31877 1.24490 1.69919 1.25648 0.80002 1.01101 1.04569 1.19844 1.00469 0.83151 0.87229 1.44422 1.09365 1.66758 1.11364 1.20642 0.84154 0.98437 0.93487 1.19594 1.01256 1.29585 0.89665 0.90986 1.25878 1.00631 1.00309 0.97611 1.70258 1.39850 1.42450 1.05405 0.85208 0.79051 0.78345 0.77512 1.20402 1.22219 1.19439 0.92216 0.89210 0.90080 0.87903 0.87708 0.94653 0.92496 0.92657 0.88102 0.92433 0.91537 0.87029 0.98380 0.95733 0.93803 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.22 71.24 0.73 -1.06 16 2 C -0.05 -1.96 7.11 41.26 0.29 -1.67 16 3 N -0.50 -20.31 11.29 -291.98 -3.30 -23.61 16 4 C 0.16 6.32 6.85 88.34 0.61 6.92 16 5 C 0.00 0.09 3.39 -11.54 -0.04 0.05 16 6 C -0.14 -3.51 9.18 71.98 0.66 -2.85 16 7 C -0.13 -2.74 9.18 71.98 0.66 -2.08 16 8 O -0.22 -9.92 10.78 -3.70 -0.04 -9.96 16 9 C -0.06 -2.49 6.97 24.79 0.17 -2.31 16 10 C 0.22 9.11 6.04 85.64 0.52 9.63 16 11 N -0.60 -30.12 2.91 -731.32 -2.13 -32.25 16 12 C 0.18 8.64 9.01 127.77 1.15 9.79 16 13 C -0.27 -15.11 9.68 84.03 0.81 -14.30 16 14 H 0.07 3.93 7.84 -2.91 -0.02 3.90 16 15 C -0.05 -2.77 5.13 84.86 0.44 -2.33 16 16 N -0.93 -56.12 10.57 21.65 0.23 -55.89 16 17 Si 0.97 45.66 29.57 68.60 2.03 47.69 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.09 2.46 7.16 -2.39 -0.02 2.44 16 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 32 H 0.11 3.73 6.88 -2.39 -0.02 3.71 16 33 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 34 H 0.02 1.28 7.19 -2.38 -0.02 1.26 16 35 H 0.04 1.72 7.84 -2.39 -0.02 1.70 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -70.22 303.13 3.84 -66.39 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.05 Total: 7.84 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.00 Total: -0.22 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -5.20 Total: -111.75 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.04 Total: -9.96 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.22 3.84 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428253817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.652 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds