Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00308 * 2 1 4 4 C 1.50696 * 119.99983 * 180.02562 * 2 1 3 5 5 N 1.46505 * 109.47344 * 94.99431 * 4 2 1 6 6 C 1.34770 * 119.99997 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00460 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99918 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99942 * 180.27587 * 8 6 5 10 10 C 1.53005 * 109.46942 * 178.21726 * 9 8 6 11 11 C 1.50697 * 115.54927 * 65.12975 * 10 9 8 12 12 H 1.08000 * 119.99825 * 265.41127 * 11 10 9 13 13 C 1.37870 * 120.00191 * 85.40713 * 11 10 9 14 14 N 1.31511 * 120.00139 * 353.55966 * 13 11 10 15 15 Si 1.86796 * 120.00125 * 173.55888 * 13 11 10 16 16 H 1.48501 * 109.46996 * 90.00080 * 15 13 11 17 17 H 1.48505 * 109.47390 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.47242 * 330.00261 * 15 13 11 19 19 C 1.53005 * 117.49892 * 279.45811 * 10 9 8 20 20 C 1.52995 * 117.49601 * 210.80112 * 10 9 8 21 21 H 1.08005 * 119.99899 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00069 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47056 * 270.00757 * 3 2 1 24 24 H 1.09004 * 109.46943 * 29.99817 * 3 2 1 25 25 H 1.08992 * 109.47800 * 150.00109 * 3 2 1 26 26 H 1.09009 * 109.47178 * 334.99854 * 4 2 1 27 27 H 1.08997 * 109.47435 * 214.99797 * 4 2 1 28 28 H 0.96999 * 119.99285 * 0.02562 * 5 4 2 29 29 H 0.96998 * 119.99939 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47336 * 298.21717 * 9 8 6 31 31 H 1.09001 * 109.46683 * 58.22047 * 9 8 6 32 32 H 0.97003 * 120.00760 * 185.06462 * 14 13 11 33 33 H 1.09006 * 117.49485 * 359.97438 * 19 10 9 34 34 H 1.08992 * 117.49885 * 145.01646 * 19 10 9 35 35 H 1.09009 * 117.49505 * 214.98214 * 20 10 9 36 36 H 1.08997 * 117.50195 * 359.97126 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.0934 -2.8037 -1.6225 7 8 3.4188 -3.5286 -0.7022 8 7 3.4143 -3.1367 -2.8885 9 6 4.1498 -4.3750 -3.1562 10 6 4.3455 -4.5360 -4.6651 11 6 5.2155 -3.4956 -5.3222 12 1 4.7663 -2.6256 -5.7779 13 6 6.5849 -3.6545 -5.3417 14 7 7.1415 -4.6450 -4.6794 15 14 7.6498 -2.4629 -6.3089 16 1 8.0430 -1.3288 -5.4345 17 1 8.8680 -3.1641 -6.7878 18 1 6.8849 -1.9482 -7.4731 19 6 3.1708 -5.0885 -5.4749 20 6 4.4037 -5.9598 -5.2220 21 1 -0.5400 0.9354 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 2.2452 1.6197 -1.0277 24 1 1.4745 2.0647 0.5138 25 1 3.0160 1.1748 0.5138 26 1 1.4386 -2.0857 0.4334 27 1 2.9742 -1.1991 0.5888 28 1 2.1526 -1.0888 -2.1109 29 1 3.1550 -2.5582 -3.6227 30 1 5.1225 -4.3331 -2.6661 31 1 3.5849 -5.2237 -2.7705 32 1 8.1079 -4.7145 -4.6322 33 1 2.2587 -5.3378 -4.9325 34 1 3.0274 -4.6998 -6.4830 35 1 5.0710 -6.1440 -6.0640 36 1 4.3030 -6.7819 -4.5134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430992022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = -17.765057 kcal Electronic energy + Delta-G solvation = -16723.260575 eV Core-core repulsion = 14014.580445 eV Total energy + Delta-G solvation = -2708.680130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96026 -38.63759 -37.42687 -34.97701 -34.13687 -33.89633 -28.64851 -28.08387 -27.44222 -26.05660 -22.96388 -21.81147 -21.22319 -20.03036 -18.88585 -18.00357 -17.12470 -16.76050 -16.50281 -15.79470 -15.76097 -15.32024 -14.91820 -14.79274 -14.37550 -13.89513 -13.76578 -13.45761 -13.05845 -12.89494 -12.82334 -12.55574 -12.33415 -12.02927 -12.01554 -11.53431 -11.33049 -10.84046 -10.45359 -10.29872 -10.14287 -10.00693 -9.57865 -8.08214 -6.21378 1.05938 1.42827 1.45476 1.53899 2.07068 2.24777 2.43703 3.19980 3.39541 3.66711 3.77327 4.00226 4.26414 4.51852 4.57861 4.66900 4.70304 4.75439 4.79841 4.86588 5.00290 5.01076 5.04902 5.17102 5.28574 5.50348 5.60087 5.62178 5.64818 5.73097 5.80098 5.88974 6.16753 6.38291 6.85508 7.24394 7.47954 7.68401 8.99503 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.005747 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.165724 B = 4870.986518 C = 5446.400719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C -0.117 4.117 4 C 0.174 3.826 5 N -0.729 5.729 6 C 0.694 3.306 7 O -0.648 6.648 8 N -0.714 5.714 9 C 0.199 3.801 10 C 0.003 3.997 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.263 1.263 19 C -0.175 4.175 20 C -0.158 4.158 21 H 0.124 0.876 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.409 0.591 29 H 0.407 0.593 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 10.630 4.605 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C -0.173 4.173 4 C 0.050 3.950 5 N -0.386 5.386 6 C 0.394 3.606 7 O -0.531 6.531 8 N -0.368 5.368 9 C 0.074 3.926 10 C 0.003 3.997 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.177 4.177 14 N -0.546 5.546 15 Si 0.777 3.223 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.187 1.187 19 C -0.212 4.212 20 C -0.197 4.197 21 H 0.142 0.858 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.245 0.755 29 H 0.242 0.758 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.857 9.844 5.417 16.335 hybrid contribution 0.944 0.558 -0.914 1.428 sum -10.912 10.403 4.504 15.734 Atomic orbital electron populations 1.24049 0.94636 1.03273 0.97116 1.21728 0.95794 0.94558 1.03444 1.20867 1.00026 0.93720 1.02735 1.20166 0.98503 0.94356 0.81967 1.44981 1.60537 1.23100 1.09987 1.16245 0.79022 0.82056 0.83312 1.90836 1.62365 1.54880 1.45052 1.44907 1.59716 1.26135 1.06007 1.20402 0.92664 0.83562 0.95948 1.19080 0.97038 0.94282 0.89348 1.20642 0.90863 1.06372 1.36165 0.91761 1.25712 0.99471 0.96554 0.95937 1.70106 1.10546 1.32062 1.41935 0.85675 0.78365 0.78879 0.79420 1.20689 1.21596 1.18669 1.23001 0.91756 1.05160 1.01263 1.22432 1.00336 0.94480 1.02430 0.85813 0.88217 0.90967 0.90034 0.92457 0.92197 0.92777 0.75498 0.75793 0.95657 0.94981 0.93248 0.89365 0.89444 0.91721 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 13.89 67.78 0.94 -1.27 16 2 C -0.15 -2.76 5.42 -16.49 -0.09 -2.85 16 3 C -0.12 -1.76 10.03 71.23 0.71 -1.04 16 4 C 0.17 4.42 5.83 85.63 0.50 4.92 16 5 N -0.73 -20.86 5.55 -482.29 -2.68 -23.54 16 6 C 0.69 27.35 8.57 179.05 1.53 28.88 16 7 O -0.65 -31.43 16.34 -3.98 -0.06 -31.49 16 8 N -0.71 -28.31 5.48 -478.53 -2.62 -30.94 16 9 C 0.20 9.40 5.50 86.38 0.48 9.88 16 10 C 0.00 0.16 1.38 -52.93 -0.07 0.08 16 11 C -0.50 -25.66 8.63 25.60 0.22 -25.44 16 12 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 13 C 0.02 1.27 5.39 84.65 0.46 1.73 16 14 N -0.91 -51.89 12.91 21.44 0.28 -51.61 16 15 Si 0.95 42.24 29.55 68.60 2.03 44.27 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.17 -6.94 9.96 30.62 0.30 -6.63 16 20 C -0.16 -7.26 9.42 30.62 0.29 -6.97 16 21 H 0.12 1.26 8.04 -2.91 -0.02 1.24 16 22 H 0.10 1.48 7.99 -2.91 -0.02 1.45 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 0.92 8.06 -2.39 -0.02 0.91 16 25 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 26 H 0.06 1.61 7.99 -2.38 -0.02 1.59 16 27 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 28 H 0.41 9.28 8.48 -92.71 -0.79 8.49 16 29 H 0.41 14.14 8.38 -92.71 -0.78 13.36 16 30 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 32 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 33 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 34 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.06 3.18 8.14 -2.38 -0.02 3.16 16 36 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -65.44 313.36 1.72 -63.73 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.50 Total: 28.29 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.27 Total: 1.29 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -5.02 Total: -106.09 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.44 1.72 -63.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430992022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.964 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds