Wall clock time and date at job start Sun Mar 29 2020 22:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35459 * 126.77737 * 2 1 4 4 C 1.41372 * 103.98794 * 180.09939 * 3 2 1 5 5 C 1.50699 * 126.80361 * 179.88825 * 4 3 2 6 6 N 1.46899 * 109.47139 * 94.70802 * 5 4 3 7 7 C 1.46897 * 111.00072 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47406 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46844 * 299.99842 * 8 7 6 10 10 C 1.53000 * 109.47320 * 59.99742 * 8 7 6 11 11 C 1.50696 * 109.47647 * 180.02562 * 8 7 6 12 12 H 1.08003 * 119.99934 * 1.23664 * 11 8 7 13 13 C 1.37877 * 120.00356 * 181.24361 * 11 8 7 14 14 N 1.31520 * 119.99654 * 194.11281 * 13 11 8 15 15 Si 1.86801 * 120.00049 * 14.10223 * 13 11 8 16 16 H 1.48501 * 109.46375 * 84.53938 * 15 13 11 17 17 H 1.48496 * 109.47060 * 204.53885 * 15 13 11 18 18 H 1.48498 * 109.47063 * 324.54024 * 15 13 11 19 19 N 1.30174 * 106.39619 * 359.62294 * 4 3 2 20 20 O 1.20918 * 111.60680 * 0.24722 * 19 4 3 21 21 H 1.09004 * 109.46749 * 180.30521 * 1 2 3 22 22 H 1.08998 * 109.47001 * 300.30110 * 1 2 3 23 23 H 1.08993 * 109.46899 * 60.30245 * 1 2 3 24 24 H 1.08000 * 128.00103 * 359.95984 * 3 2 1 25 25 H 1.09000 * 109.47272 * 334.70822 * 5 4 3 26 26 H 1.08998 * 109.47108 * 214.71133 * 5 4 3 27 27 H 1.00898 * 110.99893 * 303.95692 * 6 5 4 28 28 H 1.09008 * 109.46994 * 299.99909 * 7 6 5 29 29 H 1.09000 * 109.47597 * 59.99897 * 7 6 5 30 30 H 1.09003 * 109.47247 * 69.51402 * 9 8 7 31 31 H 1.09000 * 109.47264 * 189.51773 * 9 8 7 32 32 H 1.08998 * 109.47271 * 309.51515 * 9 8 7 33 33 H 1.08999 * 109.47009 * 60.00202 * 10 8 7 34 34 H 1.09004 * 109.47042 * 180.02562 * 10 8 7 35 35 H 1.09005 * 109.47051 * 299.99927 * 10 8 7 36 36 H 0.97000 * 119.99475 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5374 -0.0024 5 6 4.9211 1.3001 -0.0057 6 7 5.4039 1.4510 1.3734 7 6 6.6717 2.1920 1.4093 8 6 7.1422 2.3281 2.8587 9 6 6.0868 3.0838 3.6686 10 6 7.3475 0.9367 3.4611 11 6 8.4425 3.0888 2.8956 12 1 8.8787 3.4575 1.9789 13 6 9.0756 3.3141 4.0996 14 7 10.0452 4.1993 4.1771 15 14 8.5559 2.3623 5.6206 16 1 9.2564 1.0532 5.6484 17 1 8.9100 3.1392 6.8356 18 1 7.0884 2.1380 5.5867 19 7 3.4764 -0.7562 0.0047 20 8 2.3096 -1.0736 0.0060 21 1 -0.3633 -1.0277 0.0055 22 1 -0.3633 0.5185 0.8873 23 1 -0.3633 0.5091 -0.8926 24 1 2.0344 2.1271 -0.0006 25 1 4.7632 2.2851 -0.4452 26 1 5.6607 0.7550 -0.5921 27 1 4.7085 1.8964 1.9532 28 1 7.4238 1.6534 0.8326 29 1 6.5257 3.1831 0.9798 30 1 5.2014 2.4586 3.7845 31 1 6.4897 3.3290 4.6513 32 1 5.8173 4.0021 3.1469 33 1 8.0994 0.3984 2.8841 34 1 7.6822 1.0337 4.4939 35 1 6.4066 0.3869 3.4346 36 1 10.4908 4.3575 5.0240 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:06 Heat of formation + Delta-G solvation = 48.050856 kcal Electronic energy + Delta-G solvation = -16948.266879 eV Core-core repulsion = 14242.440741 eV Total energy + Delta-G solvation = -2705.826138 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.88296 -39.07377 -36.51985 -34.64344 -34.10199 -33.14934 -28.65799 -28.20108 -27.93053 -27.07609 -25.08336 -23.84656 -21.17895 -20.51558 -18.61434 -18.17269 -18.02725 -17.38014 -16.71289 -15.67040 -15.30807 -15.06603 -14.87173 -14.62033 -14.29060 -14.10149 -13.92479 -13.79923 -13.71895 -13.30790 -12.99724 -12.63890 -12.33687 -12.01696 -11.98298 -11.87387 -11.64490 -11.15228 -10.95801 -10.58690 -10.34498 -10.19934 -9.34446 -8.30377 -6.29082 0.59028 1.25141 1.34960 1.38081 1.48496 2.31708 2.34548 3.06679 3.16351 3.39905 3.68874 4.17345 4.17976 4.29486 4.34406 4.44110 4.54799 4.62806 4.66902 4.78750 4.81515 4.89193 4.93386 4.97151 5.04847 5.05428 5.17773 5.26668 5.31046 5.55288 5.72249 5.81823 6.05298 6.31934 6.48079 6.76871 7.36176 7.40516 8.86686 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047934 B = 0.004966 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.998104 B = 5636.858673 C = 5765.442025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.239 4.239 4 C 0.013 3.987 5 C 0.136 3.864 6 N -0.685 5.685 7 C 0.099 3.901 8 C 0.034 3.966 9 C -0.140 4.140 10 C -0.131 4.131 11 C -0.512 4.512 12 H 0.033 0.967 13 C 0.020 3.980 14 N -0.946 5.946 15 Si 0.941 3.059 16 H -0.288 1.288 17 H -0.313 1.313 18 H -0.215 1.215 19 N -0.389 5.389 20 O 0.087 5.913 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.194 0.806 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.345 0.655 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.169 -6.449 -7.517 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.261 4.261 4 C -0.146 4.146 5 C 0.007 3.993 6 N -0.318 5.318 7 C -0.030 4.030 8 C 0.033 3.967 9 C -0.197 4.197 10 C -0.188 4.188 11 C -0.551 4.551 12 H 0.051 0.949 13 C -0.178 4.178 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.216 1.216 17 H -0.243 1.243 18 H -0.139 1.139 19 N -0.094 5.094 20 O 0.021 5.979 21 H 0.110 0.890 22 H 0.124 0.876 23 H 0.128 0.872 24 H 0.211 0.789 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.891 -8.012 -7.428 23.575 hybrid contribution 0.310 1.479 0.510 1.595 sum -20.581 -6.533 -6.918 22.674 Atomic orbital electron populations 1.20570 0.80710 1.05840 1.05712 1.25325 0.98048 0.85220 1.00794 1.22742 0.90259 1.02436 1.10658 1.23648 0.97881 0.89979 1.03087 1.20159 0.90109 0.97698 0.91350 1.60446 1.06137 1.55999 1.09261 1.21666 0.89883 0.94436 0.97037 1.18483 0.93174 0.92331 0.92704 1.22188 0.98121 0.99551 0.99833 1.22102 1.00587 0.98250 0.97842 1.21179 1.06554 1.34083 0.93255 0.94896 1.25749 0.95010 0.95047 1.01960 1.70102 1.27299 1.33984 1.27208 0.86374 0.81441 0.77229 0.77757 1.21625 1.24293 1.13921 1.73861 0.97628 1.17602 1.20318 1.84798 1.11251 1.34406 1.67459 0.88976 0.87557 0.87223 0.78884 0.91230 0.90528 0.83555 0.92778 0.95677 0.92424 0.94213 0.93519 0.94421 0.95868 0.91818 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 71.24 0.74 0.24 16 2 C -0.03 -0.54 7.49 25.04 0.19 -0.35 16 3 C -0.24 -4.72 11.06 22.40 0.25 -4.47 16 4 C 0.01 0.34 6.84 43.58 0.30 0.64 16 5 C 0.14 3.80 6.27 85.56 0.54 4.33 16 6 N -0.68 -22.20 5.71 -517.94 -2.96 -25.16 16 7 C 0.10 3.81 4.57 86.30 0.39 4.20 16 8 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 9 C -0.14 -5.63 7.24 71.98 0.52 -5.11 16 10 C -0.13 -5.71 7.54 71.98 0.54 -5.17 16 11 C -0.51 -28.82 8.62 25.60 0.22 -28.60 16 12 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 13 C 0.02 1.14 5.32 84.65 0.45 1.59 16 14 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 15 Si 0.94 45.73 22.79 68.60 1.56 47.29 16 16 H -0.29 -13.99 7.10 99.48 0.71 -13.29 16 17 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 18 H -0.22 -9.27 4.65 99.48 0.46 -8.81 16 19 N -0.39 -11.85 12.07 -49.57 -0.60 -12.45 16 20 O 0.09 2.20 11.20 71.59 0.80 3.00 16 21 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.35 10.39 6.99 -89.70 -0.63 9.77 16 28 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.97 7.06 -2.39 -0.02 1.95 16 31 H 0.04 1.71 4.30 -2.39 -0.01 1.70 16 32 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 1.04 2.26 -2.38 -0.01 1.03 16 35 H 0.06 2.50 7.60 -2.38 -0.02 2.48 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -69.79 286.36 3.43 -66.36 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.21 Total: 11.42 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 4.11 Total: -31.19 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.26 Total: -96.89 kcal Atomic # 8 Polarization: 2.20 SS G_CDS: 0.80 Total: 3.00 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.56 Total: 47.29 kcal Total: -69.79 3.43 -66.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.412 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds