Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47080 * 2 1 4 4 N 1.30177 * 126.80394 * 84.98213 * 3 2 1 5 5 O 1.20924 * 111.60230 * 179.97438 * 4 3 2 6 6 C 1.34034 * 111.56770 * 0.02562 * 5 4 3 7 7 C 1.35445 * 106.45110 * 359.75040 * 6 5 4 8 8 C 1.50699 * 128.01299 * 180.23672 * 7 6 5 9 9 N 1.46902 * 109.47274 * 104.38740 * 8 7 6 10 10 C 1.46897 * 110.99781 * 289.51878 * 9 8 7 11 11 C 1.53004 * 109.47197 * 303.74430 * 10 9 8 12 12 C 1.46897 * 110.99636 * 165.56736 * 9 8 7 13 13 C 1.50705 * 109.46917 * 195.58666 * 12 9 8 14 14 H 1.08002 * 119.99573 * 5.05529 * 13 12 9 15 15 C 1.37875 * 120.00195 * 185.06077 * 13 12 9 16 16 N 1.31521 * 119.99905 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47036 * 89.99934 * 17 15 13 19 19 H 1.48496 * 109.47048 * 209.99932 * 17 15 13 20 20 H 1.48498 * 109.46915 * 330.00034 * 17 15 13 21 21 H 1.08991 * 109.47443 * 304.94181 * 1 2 3 22 22 H 1.09004 * 109.46851 * 64.94615 * 1 2 3 23 23 H 1.08997 * 109.47015 * 184.93881 * 1 2 3 24 24 H 1.08996 * 109.47324 * 239.99497 * 2 1 3 25 25 H 1.09005 * 109.46848 * 119.99772 * 2 1 3 26 26 H 1.08003 * 126.77302 * 180.02562 * 6 5 4 27 27 H 1.09006 * 109.47117 * 224.39154 * 8 7 6 28 28 H 1.08999 * 109.46931 * 344.38322 * 8 7 6 29 29 H 1.08997 * 109.47341 * 63.74797 * 10 9 8 30 30 H 1.08998 * 109.47113 * 183.74890 * 10 9 8 31 31 H 1.09004 * 109.46888 * 66.47974 * 11 10 9 32 32 H 1.09005 * 109.47068 * 186.47803 * 11 10 9 33 33 H 1.08999 * 109.47090 * 306.48182 * 11 10 9 34 34 H 1.09001 * 109.47662 * 315.58562 * 12 9 8 35 35 H 1.09002 * 109.47506 * 75.58913 * 12 9 8 36 36 H 0.96999 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2064 2.1865 1.0383 5 8 2.6220 3.2772 0.7225 6 6 2.7812 3.3786 -0.6045 7 6 2.4131 2.1845 -1.1273 8 6 2.4078 1.7675 -2.5754 9 7 3.5488 0.8789 -2.8332 10 6 4.8155 1.6211 -2.7847 11 6 4.7657 2.7809 -3.7814 12 6 3.3949 0.1838 -4.1182 13 6 4.3535 -0.9774 -4.1792 14 1 4.9528 -1.2287 -3.3165 15 6 4.4655 -1.7189 -5.3361 16 7 3.7354 -1.4131 -6.3864 17 14 5.6543 -3.1578 -5.4120 18 1 4.9595 -4.3972 -4.9799 19 1 6.1424 -3.3238 -6.8046 20 1 6.8059 -2.8964 -4.5116 21 1 -0.3634 0.5885 0.8423 22 1 -0.3633 0.4352 -0.9310 23 1 -0.3633 -1.0238 0.0885 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 3.1375 4.2406 -1.1490 27 1 1.4797 1.2412 -2.7986 28 1 2.4853 2.6514 -3.2084 29 1 4.9690 2.0126 -1.7791 30 1 5.6377 0.9542 -3.0442 31 1 4.0199 3.5068 -3.4572 32 1 5.7431 3.2609 -3.8295 33 1 4.4984 2.4012 -4.7675 34 1 2.3729 -0.1834 -4.2126 35 1 3.6092 0.8751 -4.9332 36 1 3.8139 -1.9350 -7.2003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507122143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = 54.345387 kcal Electronic energy + Delta-G solvation = -17390.965563 eV Core-core repulsion = 14685.412377 eV Total energy + Delta-G solvation = -2705.553187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.62362 -37.57948 -35.10999 -32.82366 -31.94064 -30.78647 -29.60192 -27.57164 -25.11152 -24.16044 -23.14642 -21.38890 -20.57274 -19.33437 -17.27542 -17.04090 -16.21101 -15.28382 -14.95421 -14.60891 -14.22023 -13.96062 -13.39369 -13.21025 -13.00541 -12.39676 -12.08158 -11.82915 -11.67878 -11.35478 -11.29397 -11.10717 -11.04715 -10.72152 -10.62139 -10.46953 -10.16433 -9.82430 -9.54862 -9.32622 -9.09442 -8.44953 -7.26106 -6.05116 -4.06173 1.76656 2.54046 3.30440 3.36814 3.40563 3.52713 4.39771 4.45776 4.81907 5.04155 5.23877 5.30404 5.37955 5.50536 5.52191 5.65274 5.68943 5.83197 5.87251 5.99811 6.05871 6.09121 6.17169 6.27007 6.31475 6.40850 6.55491 6.59545 6.81934 7.22121 7.37407 7.79105 8.05455 8.15009 8.50413 8.55894 9.02322 9.58296 11.05225 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006733 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.307255 B = 4157.647131 C = 4679.196361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.043 3.957 4 N -0.378 5.378 5 O 0.088 5.912 6 C -0.076 4.076 7 C -0.166 4.166 8 C 0.120 3.880 9 N -0.528 5.528 10 C 0.060 3.940 11 C -0.189 4.189 12 C 0.189 3.811 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.209 0.791 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.004 0.996 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 7.953 8.441 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.116 4.116 4 N -0.084 5.084 5 O 0.024 5.976 6 C -0.158 4.158 7 C -0.171 4.171 8 C -0.009 4.009 9 N -0.252 5.252 10 C -0.068 4.068 11 C -0.248 4.248 12 C 0.064 3.936 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.093 0.907 26 H 0.225 0.775 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.427 7.374 9.934 12.837 hybrid contribution 0.741 -0.147 -1.742 1.899 sum -2.685 7.226 8.192 11.249 Atomic orbital electron populations 1.21696 0.94578 1.01960 1.01840 1.19982 0.95679 0.88396 1.04640 1.23461 1.01012 0.98905 0.88258 1.73770 1.17140 0.93094 1.24408 1.84756 1.61967 1.27513 1.23347 1.25674 1.04997 1.01259 0.83829 1.21408 1.04252 0.93084 0.98334 1.20367 0.96603 0.96450 0.87486 1.62293 0.99578 1.26016 1.37318 1.21960 0.94194 0.93946 0.96720 1.22406 1.00648 0.99542 1.02172 1.19816 0.97449 0.93009 0.83291 1.21142 1.22434 1.12603 0.98079 0.91908 1.24971 0.96200 0.97803 0.95575 1.69954 1.40544 1.40346 1.03079 0.86529 0.81267 0.82738 0.77073 1.20652 1.21360 1.19886 0.93085 0.92424 0.91850 0.87860 0.90718 0.77488 0.90178 0.93795 0.93130 0.89981 0.93767 0.93162 0.91477 0.95695 0.97789 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.90 37.16 0.37 -1.43 16 2 C -0.05 -0.73 6.45 -27.88 -0.18 -0.91 16 3 C 0.04 0.69 6.58 -82.10 -0.54 0.15 16 4 N -0.38 -6.22 12.07 33.42 0.40 -5.81 16 5 O 0.09 1.30 11.20 17.19 0.19 1.49 16 6 C -0.08 -1.00 12.09 29.74 0.36 -0.64 16 7 C -0.17 -2.59 5.01 -104.42 -0.52 -3.11 16 8 C 0.12 2.02 5.17 -4.98 -0.03 2.00 16 9 N -0.53 -10.66 4.62 -237.51 -1.10 -11.75 16 10 C 0.06 1.12 5.77 -3.82 -0.02 1.10 16 11 C -0.19 -3.09 9.15 37.16 0.34 -2.75 16 12 C 0.19 4.62 4.63 -4.98 -0.02 4.60 16 13 C -0.50 -13.64 8.41 -34.44 -0.29 -13.93 16 14 H 0.06 1.71 7.69 -52.49 -0.40 1.31 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.10 1.70 8.08 -51.93 -0.42 1.28 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.21 1.95 8.06 -52.48 -0.42 1.53 16 27 H 0.08 1.37 7.76 -51.93 -0.40 0.97 16 28 H 0.04 0.70 5.83 -51.93 -0.30 0.39 16 29 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 30 H 0.08 1.69 7.21 -51.93 -0.37 1.32 16 31 H 0.04 0.63 6.51 -51.93 -0.34 0.29 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 34 H 0.03 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.00 0.11 6.03 -51.93 -0.31 -0.20 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -29.27 298.15 -6.26 -35.53 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.33 Total: -1.49 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.63 Total: -13.49 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.04 Total: -42.80 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.27 -6.26 -35.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507122143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.876 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds