Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47080 * 2 1 4 4 N 1.30177 * 126.80394 * 84.98213 * 3 2 1 5 5 O 1.20924 * 111.60230 * 179.97438 * 4 3 2 6 6 C 1.34034 * 111.56770 * 0.02562 * 5 4 3 7 7 C 1.35445 * 106.45110 * 359.75040 * 6 5 4 8 8 C 1.50699 * 128.01299 * 180.23672 * 7 6 5 9 9 N 1.46902 * 109.47274 * 104.38740 * 8 7 6 10 10 C 1.46897 * 110.99781 * 289.51878 * 9 8 7 11 11 C 1.53004 * 109.47197 * 303.74430 * 10 9 8 12 12 C 1.46897 * 110.99636 * 165.56736 * 9 8 7 13 13 C 1.50705 * 109.46917 * 195.58666 * 12 9 8 14 14 H 1.08002 * 119.99573 * 5.05529 * 13 12 9 15 15 C 1.37875 * 120.00195 * 185.06077 * 13 12 9 16 16 N 1.31521 * 119.99905 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47036 * 89.99934 * 17 15 13 19 19 H 1.48496 * 109.47048 * 209.99932 * 17 15 13 20 20 H 1.48498 * 109.46915 * 330.00034 * 17 15 13 21 21 H 1.08991 * 109.47443 * 304.94181 * 1 2 3 22 22 H 1.09004 * 109.46851 * 64.94615 * 1 2 3 23 23 H 1.08997 * 109.47015 * 184.93881 * 1 2 3 24 24 H 1.08996 * 109.47324 * 239.99497 * 2 1 3 25 25 H 1.09005 * 109.46848 * 119.99772 * 2 1 3 26 26 H 1.08003 * 126.77302 * 180.02562 * 6 5 4 27 27 H 1.09006 * 109.47117 * 224.39154 * 8 7 6 28 28 H 1.08999 * 109.46931 * 344.38322 * 8 7 6 29 29 H 1.08997 * 109.47341 * 63.74797 * 10 9 8 30 30 H 1.08998 * 109.47113 * 183.74890 * 10 9 8 31 31 H 1.09004 * 109.46888 * 66.47974 * 11 10 9 32 32 H 1.09005 * 109.47068 * 186.47803 * 11 10 9 33 33 H 1.08999 * 109.47090 * 306.48182 * 11 10 9 34 34 H 1.09001 * 109.47662 * 315.58562 * 12 9 8 35 35 H 1.09002 * 109.47506 * 75.58913 * 12 9 8 36 36 H 0.96999 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2064 2.1865 1.0383 5 8 2.6220 3.2772 0.7225 6 6 2.7812 3.3786 -0.6045 7 6 2.4131 2.1845 -1.1273 8 6 2.4078 1.7675 -2.5754 9 7 3.5488 0.8789 -2.8332 10 6 4.8155 1.6211 -2.7847 11 6 4.7657 2.7809 -3.7814 12 6 3.3949 0.1838 -4.1182 13 6 4.3535 -0.9774 -4.1792 14 1 4.9528 -1.2287 -3.3165 15 6 4.4655 -1.7189 -5.3361 16 7 3.7354 -1.4131 -6.3864 17 14 5.6543 -3.1578 -5.4120 18 1 4.9595 -4.3972 -4.9799 19 1 6.1424 -3.3238 -6.8046 20 1 6.8059 -2.8964 -4.5116 21 1 -0.3634 0.5885 0.8423 22 1 -0.3633 0.4352 -0.9310 23 1 -0.3633 -1.0238 0.0885 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 3.1375 4.2406 -1.1490 27 1 1.4797 1.2412 -2.7986 28 1 2.4853 2.6514 -3.2084 29 1 4.9690 2.0126 -1.7791 30 1 5.6377 0.9542 -3.0442 31 1 4.0199 3.5068 -3.4572 32 1 5.7431 3.2609 -3.8295 33 1 4.4984 2.4012 -4.7675 34 1 2.3729 -0.1834 -4.2126 35 1 3.6092 0.8751 -4.9332 36 1 3.8139 -1.9350 -7.2003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507122143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = 36.140591 kcal Electronic energy + Delta-G solvation = -17391.754983 eV Core-core repulsion = 14685.412377 eV Total energy + Delta-G solvation = -2706.342606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.82228 -39.11487 -36.34659 -34.78060 -33.26701 -31.94907 -31.13050 -29.29863 -26.69599 -25.29757 -24.89602 -22.80650 -21.71641 -20.85306 -18.49053 -18.40431 -18.10997 -16.86159 -16.61486 -15.94040 -15.82459 -15.21627 -14.80749 -14.61746 -14.30811 -13.87573 -13.53126 -13.26498 -13.15632 -12.97209 -12.74182 -12.49326 -12.48578 -12.42412 -12.27725 -11.90714 -11.72699 -11.43272 -11.32265 -10.73463 -10.56826 -10.31870 -8.88922 -8.16269 -6.24952 0.65091 1.31169 1.41906 1.42560 1.53297 2.42020 2.46809 3.16082 3.23362 3.50424 3.72892 3.99911 4.20493 4.29989 4.38669 4.42544 4.45783 4.50157 4.63030 4.70767 4.81848 4.87089 4.99432 5.04027 5.06792 5.15120 5.20412 5.23879 5.36973 5.38239 5.54565 5.71100 6.12637 6.41040 6.68196 6.91860 7.41393 7.44278 8.93277 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006733 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.307255 B = 4157.647131 C = 4679.196361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C 0.030 3.970 4 N -0.397 5.397 5 O 0.091 5.909 6 C -0.044 4.044 7 C -0.193 4.193 8 C 0.128 3.872 9 N -0.538 5.538 10 C 0.062 3.938 11 C -0.180 4.180 12 C 0.206 3.794 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.268 1.268 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.252 0.748 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.001 0.999 35 H -0.015 1.015 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 9.055 9.284 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.129 4.129 4 N -0.104 5.104 5 O 0.028 5.972 6 C -0.126 4.126 7 C -0.197 4.197 8 C 0.000 4.000 9 N -0.262 5.262 10 C -0.066 4.066 11 C -0.238 4.238 12 C 0.080 3.920 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.785 3.215 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.193 1.193 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.003 0.997 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.886 8.485 10.802 14.036 hybrid contribution 0.564 -0.419 -1.959 2.081 sum -2.321 8.067 8.843 12.192 Atomic orbital electron populations 1.21644 0.92939 1.02989 1.01768 1.19960 0.97128 0.88010 1.03617 1.23687 1.01139 0.99384 0.88648 1.73773 1.18204 0.93686 1.24716 1.84742 1.61455 1.26873 1.24113 1.26354 1.01886 1.01357 0.83003 1.21255 1.06776 0.94406 0.97264 1.20243 0.94733 0.96180 0.88894 1.62147 1.01542 1.27909 1.34575 1.21926 0.92323 0.94001 0.98350 1.22297 1.02754 0.99127 0.99626 1.19421 0.95257 0.92409 0.84873 1.21435 1.22666 1.13517 0.97879 0.92598 1.25773 0.97812 1.00392 0.95248 1.70063 1.42025 1.41611 1.03629 0.85523 0.79235 0.79485 0.77222 1.20095 1.20842 1.19250 0.92708 0.92760 0.90378 0.90083 0.90412 0.73210 0.91275 0.92201 0.91154 0.92824 0.90979 0.91047 0.94633 0.98142 0.99719 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.90 71.98 0.71 -2.62 16 2 C -0.05 -1.45 6.45 29.85 0.19 -1.26 16 3 C 0.03 0.94 6.58 43.58 0.29 1.23 16 4 N -0.40 -12.39 12.07 -49.55 -0.60 -12.99 16 5 O 0.09 2.44 11.20 71.69 0.80 3.24 16 6 C -0.04 -1.00 12.09 67.17 0.81 -0.19 16 7 C -0.19 -5.62 5.01 -19.74 -0.10 -5.72 16 8 C 0.13 4.20 5.17 85.56 0.44 4.65 16 9 N -0.54 -21.74 4.62 -905.36 -4.18 -25.92 16 10 C 0.06 2.24 5.77 86.31 0.50 2.73 16 11 C -0.18 -5.51 9.15 71.98 0.66 -4.86 16 12 C 0.21 10.38 4.63 85.56 0.40 10.77 16 13 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 14 H 0.06 3.10 7.69 -2.91 -0.02 3.08 16 15 C 0.01 0.32 5.46 84.65 0.46 0.78 16 16 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 17 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 25 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.25 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.07 2.40 7.76 -2.38 -0.02 2.38 16 28 H 0.06 1.77 5.83 -2.39 -0.01 1.76 16 29 H 0.07 2.25 7.40 -2.39 -0.02 2.23 16 30 H 0.05 2.22 7.21 -2.39 -0.02 2.20 16 31 H 0.07 1.79 6.51 -2.38 -0.02 1.77 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.03 1.32 6.17 -2.39 -0.01 1.31 16 34 H 0.00 0.03 7.75 -2.39 -0.02 0.01 16 35 H -0.01 -0.80 6.03 -2.39 -0.01 -0.81 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -63.66 298.15 3.97 -59.69 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.06 Total: 7.35 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.58 Total: -22.81 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.49 Total: -93.41 kcal Atomic # 8 Polarization: 2.44 SS G_CDS: 0.80 Total: 3.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.66 3.97 -59.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507122143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.831 kcal (2) G-P(sol) polarization free energy of solvation -63.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds