Wall clock time and date at job start Sun Mar 29 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 126.79763 * 2 1 4 4 O 1.20925 * 111.60242 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56931 * 359.75616 * 4 3 2 6 6 C 1.50698 * 126.78063 * 180.28505 * 5 4 3 7 7 C 1.35459 * 106.44256 * 0.38511 * 5 4 3 8 8 C 1.50700 * 128.00320 * 179.90661 * 7 5 4 9 9 C 1.52995 * 109.47360 * 275.30270 * 8 7 5 10 10 H 1.09007 * 109.47251 * 54.47656 * 9 8 7 11 11 C 1.52996 * 109.47222 * 174.47557 * 9 8 7 12 12 N 1.46897 * 109.47454 * 294.47567 * 9 8 7 13 13 C 1.46899 * 111.00131 * 157.50532 * 12 9 8 14 14 C 1.50696 * 109.47204 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00271 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47263 * 59.99943 * 18 16 14 20 20 H 1.48496 * 109.47301 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47054 * 299.99842 * 18 16 14 22 22 H 1.09000 * 109.47709 * 274.88206 * 1 2 3 23 23 H 1.09000 * 109.47392 * 34.88763 * 1 2 3 24 24 H 1.09009 * 109.47315 * 154.88166 * 1 2 3 25 25 H 1.09000 * 109.47667 * 270.11498 * 6 5 4 26 26 H 1.09001 * 109.47095 * 30.12279 * 6 5 4 27 27 H 1.09003 * 109.46703 * 150.11420 * 6 5 4 28 28 H 1.09004 * 109.46446 * 155.30678 * 8 7 5 29 29 H 1.08994 * 109.47121 * 35.30788 * 8 7 5 30 30 H 1.08997 * 109.47371 * 60.00274 * 11 9 8 31 31 H 1.09001 * 109.47442 * 180.02562 * 11 9 8 32 32 H 1.09008 * 109.47044 * 300.00154 * 11 9 8 33 33 H 1.00906 * 110.99964 * 33.55760 * 12 9 8 34 34 H 1.08998 * 109.47509 * 300.00428 * 13 12 9 35 35 H 1.08997 * 109.47092 * 60.00351 * 13 12 9 36 36 H 0.96994 * 120.00492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4536 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3694 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0000 9 6 1.9607 -3.1158 -1.4354 10 1 2.9307 -2.9214 -1.8933 11 6 1.6952 -4.6225 -1.4236 12 7 0.9102 -2.4396 -2.2080 13 6 1.1972 -2.4948 -3.6476 14 6 0.1007 -1.7920 -4.4058 15 1 -0.7265 -1.3483 -3.8716 16 6 0.1534 -1.7155 -5.7814 17 7 1.1609 -2.2554 -6.4319 18 14 -1.2054 -0.8437 -6.7212 19 1 -1.2776 0.5741 -6.2855 20 1 -0.9154 -0.8997 -8.1765 21 1 -2.5032 -1.5121 -6.4486 22 1 -0.3634 0.0875 1.0239 23 1 -0.3634 0.8430 -0.5878 24 1 -0.3634 -0.9305 -0.4363 25 1 5.2202 -1.5549 -1.0145 26 1 5.6636 -0.7849 0.5279 27 1 4.7627 -2.3200 0.5261 28 1 0.9609 -2.6916 0.4250 29 1 2.6705 -3.1557 0.5981 30 1 0.7253 -4.8170 -0.9658 31 1 1.6968 -4.9998 -2.4462 32 1 2.4748 -5.1243 -0.8503 33 1 0.7912 -1.4862 -1.8994 34 1 2.1493 -2.0032 -3.8475 35 1 1.2513 -3.5353 -3.9676 36 1 1.1978 -2.2019 -7.3997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520569088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:23 Heat of formation + Delta-G solvation = 38.556487 kcal Electronic energy + Delta-G solvation = -17370.625690 eV Core-core repulsion = 14664.387845 eV Total energy + Delta-G solvation = -2706.237845 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.69534 -37.28250 -34.44597 -33.52695 -32.65324 -30.37088 -28.45274 -28.25821 -26.45944 -25.91190 -22.19507 -21.36181 -20.26499 -19.42657 -17.46958 -16.79010 -16.34307 -15.08198 -14.78274 -14.35631 -14.14611 -13.67437 -13.32924 -13.04160 -12.90285 -12.70455 -12.34091 -12.15016 -12.08160 -11.74931 -11.62441 -11.44227 -11.05256 -10.88066 -10.70297 -10.62825 -10.31030 -9.89396 -9.52811 -9.17134 -8.84988 -8.46546 -7.30026 -6.02020 -4.03776 1.65875 2.42872 3.30252 3.34254 3.37756 3.40892 4.40764 4.44265 4.62373 4.89474 5.11048 5.27268 5.34086 5.35398 5.41265 5.44930 5.51709 5.69127 5.76370 5.82318 5.88243 5.95898 6.06286 6.13322 6.19193 6.33190 6.44393 6.57130 6.75263 7.28737 7.44443 7.79580 8.15065 8.41800 8.50769 8.63329 9.04882 9.60942 11.09100 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.007073 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.327062 B = 3957.525344 C = 4378.386178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.029 3.971 3 N -0.370 5.370 4 O 0.093 5.907 5 C -0.039 4.039 6 C -0.071 4.071 7 C -0.193 4.193 8 C -0.043 4.043 9 C 0.085 3.915 10 H 0.033 0.967 11 C -0.136 4.136 12 N -0.686 5.686 13 C 0.196 3.804 14 C -0.514 4.514 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.329 0.671 34 H -0.018 1.018 35 H 0.029 0.971 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -0.584 14.481 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 N -0.076 5.076 4 O 0.028 5.972 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.197 4.197 8 C -0.081 4.081 9 C -0.026 4.026 10 H 0.051 0.949 11 C -0.194 4.194 12 N -0.319 5.319 13 C 0.069 3.931 14 C -0.553 4.553 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.148 0.852 34 H 0.000 1.000 35 H 0.047 0.953 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.301 0.161 14.273 14.908 hybrid contribution -0.001 0.383 -0.839 0.923 sum 4.300 0.544 13.434 14.116 Atomic orbital electron populations 1.20301 0.85877 1.05073 1.02821 1.23480 0.99026 0.88376 1.02133 1.73794 0.89261 1.24060 1.20521 1.84759 1.21766 1.22514 1.68160 1.24190 0.98240 0.83908 1.03906 1.20297 0.90027 0.98343 1.04142 1.21050 0.91531 0.97924 1.09196 1.20177 1.02282 0.87569 0.98066 1.21452 0.94543 0.95005 0.91591 0.94885 1.21753 1.00801 0.94714 1.02087 1.60856 1.43552 1.20882 1.06641 1.19553 0.94898 0.97116 0.81524 1.21140 1.07578 1.35277 0.91278 0.92164 1.24976 0.96033 0.95778 0.97701 1.69947 1.30576 1.45160 1.08045 0.86572 0.82270 0.80084 0.78567 1.20304 1.21301 1.20094 0.90628 0.90368 0.88636 0.89418 0.90195 0.89223 0.89895 0.90622 0.92334 0.92201 0.93633 0.85227 1.00004 0.95261 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.88 36.00 0.36 -0.83 16 2 C 0.03 0.47 6.58 -82.11 -0.54 -0.07 16 3 N -0.37 -6.53 12.07 33.42 0.40 -6.13 16 4 O 0.09 1.51 11.20 17.18 0.19 1.70 16 5 C -0.04 -0.56 7.49 -35.30 -0.26 -0.82 16 6 C -0.07 -0.70 10.30 36.00 0.37 -0.33 16 7 C -0.19 -2.95 4.93 -104.42 -0.51 -3.46 16 8 C -0.04 -0.59 5.07 -27.89 -0.14 -0.73 16 9 C 0.08 1.46 2.63 -67.72 -0.18 1.28 16 10 H 0.03 0.61 7.84 -51.93 -0.41 0.21 16 11 C -0.14 -2.11 9.39 37.16 0.35 -1.76 16 12 N -0.69 -14.74 6.29 -108.00 -0.68 -15.42 16 13 C 0.20 5.21 5.24 -4.98 -0.03 5.19 16 14 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.09 1.40 6.69 -51.92 -0.35 1.05 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.72 7.57 -51.93 -0.39 0.33 16 28 H 0.08 1.11 7.97 -51.93 -0.41 0.69 16 29 H 0.08 0.84 7.61 -51.93 -0.40 0.45 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.06 7.30 -51.93 -0.38 0.68 16 32 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.33 6.98 4.87 -39.29 -0.19 6.79 16 34 H -0.02 -0.51 8.06 -51.93 -0.42 -0.93 16 35 H 0.03 0.83 7.27 -51.93 -0.38 0.45 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -32.18 300.13 -6.26 -38.44 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.40 Total: 1.41 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -1.01 Total: -15.14 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.46 Total: -47.99 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.19 Total: 1.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.18 -6.26 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520569088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.997 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds