Wall clock time and date at job start Sun Mar 29 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 126.79763 * 2 1 4 4 O 1.20925 * 111.60242 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56931 * 359.75616 * 4 3 2 6 6 C 1.50698 * 126.78063 * 180.28505 * 5 4 3 7 7 C 1.35459 * 106.44256 * 0.38511 * 5 4 3 8 8 C 1.50700 * 128.00320 * 179.90661 * 7 5 4 9 9 C 1.52995 * 109.47360 * 275.30270 * 8 7 5 10 10 H 1.09007 * 109.47251 * 54.47656 * 9 8 7 11 11 C 1.52996 * 109.47222 * 174.47557 * 9 8 7 12 12 N 1.46897 * 109.47454 * 294.47567 * 9 8 7 13 13 C 1.46899 * 111.00131 * 157.50532 * 12 9 8 14 14 C 1.50696 * 109.47204 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00271 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47263 * 59.99943 * 18 16 14 20 20 H 1.48496 * 109.47301 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47054 * 299.99842 * 18 16 14 22 22 H 1.09000 * 109.47709 * 274.88206 * 1 2 3 23 23 H 1.09000 * 109.47392 * 34.88763 * 1 2 3 24 24 H 1.09009 * 109.47315 * 154.88166 * 1 2 3 25 25 H 1.09000 * 109.47667 * 270.11498 * 6 5 4 26 26 H 1.09001 * 109.47095 * 30.12279 * 6 5 4 27 27 H 1.09003 * 109.46703 * 150.11420 * 6 5 4 28 28 H 1.09004 * 109.46446 * 155.30678 * 8 7 5 29 29 H 1.08994 * 109.47121 * 35.30788 * 8 7 5 30 30 H 1.08997 * 109.47371 * 60.00274 * 11 9 8 31 31 H 1.09001 * 109.47442 * 180.02562 * 11 9 8 32 32 H 1.09008 * 109.47044 * 300.00154 * 11 9 8 33 33 H 1.00906 * 110.99964 * 33.55760 * 12 9 8 34 34 H 1.08998 * 109.47509 * 300.00428 * 13 12 9 35 35 H 1.08997 * 109.47092 * 60.00351 * 13 12 9 36 36 H 0.96994 * 120.00492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4536 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3694 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0000 9 6 1.9607 -3.1158 -1.4354 10 1 2.9307 -2.9214 -1.8933 11 6 1.6952 -4.6225 -1.4236 12 7 0.9102 -2.4396 -2.2080 13 6 1.1972 -2.4948 -3.6476 14 6 0.1007 -1.7920 -4.4058 15 1 -0.7265 -1.3483 -3.8716 16 6 0.1534 -1.7155 -5.7814 17 7 1.1609 -2.2554 -6.4319 18 14 -1.2054 -0.8437 -6.7212 19 1 -1.2776 0.5741 -6.2855 20 1 -0.9154 -0.8997 -8.1765 21 1 -2.5032 -1.5121 -6.4486 22 1 -0.3634 0.0875 1.0239 23 1 -0.3634 0.8430 -0.5878 24 1 -0.3634 -0.9305 -0.4363 25 1 5.2202 -1.5549 -1.0145 26 1 5.6636 -0.7849 0.5279 27 1 4.7627 -2.3200 0.5261 28 1 0.9609 -2.6916 0.4250 29 1 2.6705 -3.1557 0.5981 30 1 0.7253 -4.8170 -0.9658 31 1 1.6968 -4.9998 -2.4462 32 1 2.4748 -5.1243 -0.8503 33 1 0.7912 -1.4862 -1.8994 34 1 2.1493 -2.0032 -3.8475 35 1 1.2513 -3.5353 -3.9676 36 1 1.1978 -2.2019 -7.3997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520569088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:23 Heat of formation + Delta-G solvation = 17.197574 kcal Electronic energy + Delta-G solvation = -17371.551882 eV Core-core repulsion = 14664.387845 eV Total energy + Delta-G solvation = -2707.164037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.90301 -38.71762 -35.92071 -34.94554 -34.33711 -32.03767 -29.64895 -29.32423 -28.06629 -27.44785 -24.05035 -22.82785 -21.51929 -20.71905 -18.77492 -18.49852 -17.91123 -16.77256 -16.58710 -15.75984 -15.48011 -14.96535 -14.45193 -14.28373 -14.18385 -14.03169 -13.76817 -13.63481 -13.32128 -13.22540 -12.99482 -12.79296 -12.74846 -12.43490 -12.42574 -12.01683 -11.83623 -11.73085 -11.29851 -10.74965 -10.67027 -10.01420 -9.12273 -8.24788 -6.35810 0.51027 1.22429 1.37512 1.41012 1.48852 2.24413 2.37162 3.08201 3.25284 3.50243 3.63030 3.92099 4.05526 4.13555 4.37452 4.47745 4.52379 4.65012 4.67147 4.70042 4.84428 4.91189 4.94907 4.96624 5.00115 5.07362 5.16988 5.23642 5.27678 5.39269 5.47070 5.61534 6.02910 6.46604 6.73650 6.88360 7.32272 7.35021 8.86579 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.007073 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.327062 B = 3957.525344 C = 4378.386178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.014 3.986 3 N -0.401 5.401 4 O 0.079 5.921 5 C -0.034 4.034 6 C -0.072 4.072 7 C -0.214 4.214 8 C -0.030 4.030 9 C 0.080 3.920 10 H 0.018 0.982 11 C -0.130 4.130 12 N -0.683 5.683 13 C 0.214 3.786 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.264 1.264 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.331 0.669 34 H -0.053 1.053 35 H 0.006 0.994 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 -1.037 15.743 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 N -0.111 5.111 4 O 0.017 5.983 5 C -0.097 4.097 6 C -0.129 4.129 7 C -0.218 4.218 8 C -0.068 4.068 9 C -0.030 4.030 10 H 0.036 0.964 11 C -0.188 4.188 12 N -0.316 5.316 13 C 0.086 3.914 14 C -0.576 4.576 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.189 1.189 22 H 0.120 0.880 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.149 0.851 34 H -0.036 1.036 35 H 0.024 0.976 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.061 -0.300 15.561 16.085 hybrid contribution 0.151 0.495 -1.196 1.303 sum 4.213 0.194 14.366 14.972 Atomic orbital electron populations 1.20343 0.84837 1.04351 1.04341 1.23952 1.00040 0.88811 1.01613 1.73777 0.89884 1.25102 1.22293 1.84714 1.21398 1.23774 1.68400 1.25016 0.99830 0.83216 1.01639 1.20558 0.88437 0.99223 1.04671 1.21302 0.91752 0.98387 1.10343 1.20130 1.03982 0.86919 0.95729 1.21627 0.92395 0.95891 0.93117 0.96396 1.21724 1.02708 0.93433 1.00950 1.60776 1.45395 1.21292 1.04148 1.19152 0.92751 0.94806 0.84710 1.21529 1.08179 1.35762 0.92125 0.91995 1.25933 0.98565 0.96359 0.98748 1.70076 1.32481 1.46203 1.08485 0.85446 0.79220 0.78937 0.77099 1.19590 1.20576 1.18870 0.87953 0.91091 0.89210 0.89603 0.87907 0.86670 0.89076 0.86804 0.91657 0.95273 0.89666 0.85064 1.03569 0.97624 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 9.88 71.23 0.70 -1.56 16 2 C 0.01 0.46 6.58 43.58 0.29 0.75 16 3 N -0.40 -14.22 12.07 -49.57 -0.60 -14.82 16 4 O 0.08 2.57 11.20 71.66 0.80 3.37 16 5 C -0.03 -0.92 7.49 25.04 0.19 -0.73 16 6 C -0.07 -1.23 10.30 71.24 0.73 -0.49 16 7 C -0.21 -6.23 4.93 -19.73 -0.10 -6.33 16 8 C -0.03 -0.75 5.07 29.85 0.15 -0.60 16 9 C 0.08 2.67 2.63 44.91 0.12 2.79 16 10 H 0.02 0.66 7.84 -2.38 -0.02 0.64 16 11 C -0.13 -3.84 9.39 71.98 0.68 -3.16 16 12 N -0.68 -29.59 6.29 -495.60 -3.12 -32.71 16 13 C 0.21 11.77 5.24 85.56 0.45 12.22 16 14 C -0.54 -31.58 9.32 25.60 0.24 -31.34 16 15 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 16 C 0.00 0.13 5.46 84.65 0.46 0.60 16 17 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.09 2.58 6.69 -2.38 -0.02 2.56 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.11 1.39 7.57 -2.39 -0.02 1.37 16 28 H 0.09 2.17 7.97 -2.38 -0.02 2.15 16 29 H 0.11 2.01 7.61 -2.39 -0.02 1.99 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.02 7.30 -2.39 -0.02 1.00 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.33 14.13 4.87 -89.69 -0.44 13.69 16 34 H -0.05 -3.24 8.06 -2.39 -0.02 -3.26 16 35 H 0.01 0.34 7.27 -2.39 -0.02 0.32 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.29 300.13 3.94 -67.36 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.63 Total: 14.47 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.91 Total: -27.85 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.43 Total: -104.70 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.80 Total: 3.37 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.29 3.94 -67.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520569088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.553 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds