Wall clock time and date at job start Sun Mar 29 2020 22:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47398 * 2 1 4 4 C 1.34329 * 126.44362 * 89.97390 * 3 2 1 5 5 N 1.34480 * 107.66818 * 179.76468 * 4 3 2 6 6 C 1.30257 * 108.70024 * 0.42188 * 5 4 3 7 7 C 1.50703 * 125.61722 * 179.83421 * 6 5 4 8 8 N 1.46895 * 109.46874 * 89.69723 * 7 6 5 9 9 C 1.46900 * 111.00197 * 66.04270 * 8 7 6 10 10 C 1.46902 * 111.00186 * 189.99595 * 8 7 6 11 11 H 1.09002 * 109.46719 * 54.99999 * 10 8 7 12 12 C 1.52997 * 109.47094 * 295.00225 * 10 8 7 13 13 C 1.50697 * 109.47181 * 174.99786 * 10 8 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 O 1.33963 * 108.75797 * 359.57570 * 6 5 4 22 22 H 1.09006 * 109.46478 * 60.00019 * 1 2 3 23 23 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47167 * 300.00412 * 1 2 3 25 25 H 1.09006 * 109.47129 * 239.99356 * 2 1 3 26 26 H 1.09006 * 109.46478 * 119.99981 * 2 1 3 27 27 H 1.08000 * 126.16460 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.47257 * 329.69860 * 7 6 5 29 29 H 1.09001 * 109.46577 * 209.69714 * 7 6 5 30 30 H 1.08997 * 109.47292 * 183.95205 * 9 8 7 31 31 H 1.09002 * 109.47267 * 303.95496 * 9 8 7 32 32 H 1.09000 * 109.47210 * 63.95721 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 35 35 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2979 2.1732 1.0806 5 7 2.7275 3.3718 0.6478 6 6 2.7220 3.3720 -0.6548 7 6 3.1298 4.5260 -1.5340 8 7 4.5682 4.4396 -1.8194 9 6 4.8733 3.2553 -2.6331 10 6 5.0502 5.6646 -2.4713 11 1 4.7949 6.5278 -1.8566 12 6 4.3914 5.8042 -3.8451 13 6 6.5462 5.5904 -2.6367 14 1 7.0850 4.7201 -2.2923 15 6 7.2270 6.6337 -3.2276 16 7 6.5708 7.6933 -3.6474 17 14 9.0814 6.5415 -3.4333 18 1 9.4038 5.9170 -4.7415 19 1 9.6535 7.9108 -3.3840 20 1 9.6608 5.7231 -2.3380 21 8 2.2993 2.1754 -1.0839 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5140 -0.8900 26 1 1.8932 -0.5139 0.8901 27 1 2.1902 1.8689 2.1112 28 1 2.9165 5.4650 -1.0233 29 1 2.5708 4.4857 -2.4689 30 1 5.9517 3.1769 -2.7707 31 1 4.5057 2.3624 -2.1274 32 1 4.3888 3.3477 -3.6052 33 1 4.6466 4.9410 -4.4599 34 1 4.7487 6.7134 -4.3286 35 1 3.3093 5.8579 -3.7255 36 1 7.0498 8.4274 -4.0627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531587182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:07 Heat of formation + Delta-G solvation = 23.482231 kcal Electronic energy + Delta-G solvation = -17079.317287 eV Core-core repulsion = 14372.425773 eV Total energy + Delta-G solvation = -2706.891514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.05227 -37.33173 -34.42397 -34.34975 -32.82471 -30.10450 -28.34484 -26.85393 -25.20486 -24.28968 -23.33799 -21.65662 -20.64682 -19.33507 -16.76887 -16.55557 -16.11766 -15.12372 -14.92044 -14.65370 -14.26409 -13.89815 -13.47001 -13.17262 -12.76087 -12.59060 -12.45677 -11.90867 -11.58739 -11.39668 -11.20750 -11.14825 -10.99267 -10.78877 -10.71193 -10.53566 -10.15114 -10.07028 -9.94314 -8.94569 -8.45279 -8.41008 -7.29331 -6.03008 -4.06765 1.67555 2.86991 2.99963 3.31095 3.37884 3.42659 4.33490 4.43485 4.69407 4.87170 5.00033 5.06997 5.22030 5.29703 5.33646 5.54645 5.57579 5.81443 5.84871 5.93020 6.07971 6.15299 6.26750 6.33466 6.55788 6.62116 6.75977 6.84838 7.02812 7.36665 7.65233 7.77978 8.01237 8.10036 8.29682 8.49792 8.98032 9.58137 11.04260 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049683 B = 0.005018 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.441202 B = 5578.385024 C = 5680.912284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 C -0.064 4.064 4 C -0.040 4.040 5 N -0.476 5.476 6 C 0.219 3.781 7 C 0.145 3.855 8 N -0.527 5.527 9 C 0.032 3.968 10 C 0.212 3.788 11 H 0.045 0.955 12 C -0.176 4.176 13 C -0.500 4.500 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 O -0.203 6.203 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.177 0.823 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.032 0.968 34 H 0.091 0.909 35 H 0.009 0.991 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 -12.381 4.487 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.179 4.179 5 N -0.204 5.204 6 C 0.012 3.988 7 C 0.016 3.984 8 N -0.252 5.252 9 C -0.116 4.116 10 C 0.107 3.893 11 H 0.063 0.937 12 C -0.235 4.235 13 C -0.539 4.539 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 O -0.090 6.090 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.194 0.806 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.028 0.972 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.014 -11.727 5.170 16.264 hybrid contribution 0.389 -0.516 -1.235 1.394 sum -9.625 -12.243 3.935 16.063 Atomic orbital electron populations 1.21798 0.94056 1.02180 1.02681 1.19972 0.96155 0.86965 1.04091 1.23332 1.07179 0.96209 0.85026 1.23036 1.04484 0.90423 0.99976 1.70479 1.18124 1.22344 1.09472 1.26563 0.96328 0.85558 0.90362 1.20503 0.92339 0.90526 0.95073 1.62388 1.09162 1.05821 1.47841 1.22294 1.02681 0.91817 0.94843 1.19379 0.94908 0.85551 0.89479 0.93689 1.22451 0.95741 1.03484 1.01790 1.21070 0.90930 1.03639 1.38245 0.91849 1.24908 0.98519 0.95238 0.95504 1.69873 1.35426 1.07085 1.40932 0.86495 0.85263 0.77257 0.78400 1.20818 1.21242 1.19817 1.84411 1.64141 1.23895 1.36545 0.92339 0.91655 0.92156 0.90112 0.88837 0.80576 0.87217 0.92635 0.90341 0.94272 0.95799 0.94846 0.89001 0.97235 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.03 -0.32 6.49 -27.89 -0.18 -0.50 16 3 C -0.06 -0.90 6.64 -35.69 -0.24 -1.13 16 4 C -0.04 -0.61 11.80 -17.77 -0.21 -0.82 16 5 N -0.48 -8.90 11.29 -11.10 -0.13 -9.02 16 6 C 0.22 4.05 6.92 -12.94 -0.09 3.96 16 7 C 0.14 2.75 5.03 -4.98 -0.03 2.73 16 8 N -0.53 -11.62 4.73 -237.74 -1.13 -12.74 16 9 C 0.03 0.65 8.72 60.06 0.52 1.18 16 10 C 0.21 5.27 2.34 -68.87 -0.16 5.11 16 11 H 0.05 1.22 8.03 -51.93 -0.42 0.80 16 12 C -0.18 -4.12 8.28 37.16 0.31 -3.81 16 13 C -0.50 -13.60 7.94 -34.44 -0.27 -13.87 16 14 H 0.06 1.74 6.75 -52.49 -0.35 1.39 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 17 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 O -0.20 -3.44 10.04 5.38 0.05 -3.38 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.11 2.04 8.00 -51.93 -0.42 1.63 16 29 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 30 H 0.08 1.68 6.53 -51.93 -0.34 1.34 16 31 H 0.04 0.74 6.60 -51.93 -0.34 0.40 16 32 H 0.02 0.47 6.28 -51.93 -0.33 0.14 16 33 H 0.03 0.76 6.39 -51.93 -0.33 0.43 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 35 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -29.95 293.02 -6.47 -36.42 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.22 Total: -1.03 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.07 Total: -6.44 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.62 Total: -46.24 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.05 Total: -3.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.95 -6.47 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531587182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.903 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds