Wall clock time and date at job start Sun Mar 29 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47398 * 2 1 4 4 C 1.34329 * 126.44362 * 89.97390 * 3 2 1 5 5 N 1.34480 * 107.66818 * 179.76468 * 4 3 2 6 6 C 1.30257 * 108.70024 * 0.42188 * 5 4 3 7 7 C 1.50703 * 125.61722 * 179.83421 * 6 5 4 8 8 N 1.46895 * 109.46874 * 89.69723 * 7 6 5 9 9 C 1.46900 * 111.00197 * 66.04270 * 8 7 6 10 10 C 1.46902 * 111.00186 * 189.99595 * 8 7 6 11 11 H 1.09002 * 109.46719 * 54.99999 * 10 8 7 12 12 C 1.52997 * 109.47094 * 295.00225 * 10 8 7 13 13 C 1.50697 * 109.47181 * 174.99786 * 10 8 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 O 1.33963 * 108.75797 * 359.57570 * 6 5 4 22 22 H 1.09006 * 109.46478 * 60.00019 * 1 2 3 23 23 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47167 * 300.00412 * 1 2 3 25 25 H 1.09006 * 109.47129 * 239.99356 * 2 1 3 26 26 H 1.09006 * 109.46478 * 119.99981 * 2 1 3 27 27 H 1.08000 * 126.16460 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.47257 * 329.69860 * 7 6 5 29 29 H 1.09001 * 109.46577 * 209.69714 * 7 6 5 30 30 H 1.08997 * 109.47292 * 183.95205 * 9 8 7 31 31 H 1.09002 * 109.47267 * 303.95496 * 9 8 7 32 32 H 1.09000 * 109.47210 * 63.95721 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 35 35 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2979 2.1732 1.0806 5 7 2.7275 3.3718 0.6478 6 6 2.7220 3.3720 -0.6548 7 6 3.1298 4.5260 -1.5340 8 7 4.5682 4.4396 -1.8194 9 6 4.8733 3.2553 -2.6331 10 6 5.0502 5.6646 -2.4713 11 1 4.7949 6.5278 -1.8566 12 6 4.3914 5.8042 -3.8451 13 6 6.5462 5.5904 -2.6367 14 1 7.0850 4.7201 -2.2923 15 6 7.2270 6.6337 -3.2276 16 7 6.5708 7.6933 -3.6474 17 14 9.0814 6.5415 -3.4333 18 1 9.4038 5.9170 -4.7415 19 1 9.6535 7.9108 -3.3840 20 1 9.6608 5.7231 -2.3380 21 8 2.2993 2.1754 -1.0839 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5140 -0.8900 26 1 1.8932 -0.5139 0.8901 27 1 2.1902 1.8689 2.1112 28 1 2.9165 5.4650 -1.0233 29 1 2.5708 4.4857 -2.4689 30 1 5.9517 3.1769 -2.7707 31 1 4.5057 2.3624 -2.1274 32 1 4.3888 3.3477 -3.6052 33 1 4.6466 4.9410 -4.4599 34 1 4.7487 6.7134 -4.3286 35 1 3.3093 5.8579 -3.7255 36 1 7.0498 8.4274 -4.0627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531587182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:06 Heat of formation + Delta-G solvation = 2.079999 kcal Electronic energy + Delta-G solvation = -17080.245357 eV Core-core repulsion = 14372.425773 eV Total energy + Delta-G solvation = -2707.819584 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.30660 -39.08270 -35.71618 -35.33278 -34.68010 -31.66418 -29.97168 -28.23339 -27.20653 -25.79496 -24.42454 -22.94977 -21.91173 -21.10932 -18.36761 -17.93025 -17.77965 -16.88869 -16.03468 -15.98126 -15.84333 -15.21140 -15.03875 -14.44918 -14.15583 -14.09857 -13.50978 -13.40005 -12.96905 -12.92822 -12.68323 -12.60841 -12.57881 -12.35566 -12.28124 -12.08022 -12.03440 -11.84459 -11.39594 -10.94963 -10.49426 -9.64970 -9.01007 -8.10897 -6.21549 0.44861 1.43388 1.44959 1.55109 1.65005 1.75326 2.44189 3.09298 3.18752 3.41474 3.77585 4.06013 4.09293 4.31517 4.32838 4.42131 4.47481 4.57157 4.66172 4.77170 4.78356 4.89947 4.96656 5.01263 5.08924 5.10580 5.25155 5.31305 5.36592 5.49747 5.68773 5.75770 6.11333 6.38327 6.58281 6.82362 6.88927 7.47084 8.95316 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049683 B = 0.005018 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.441202 B = 5578.385024 C = 5680.912284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.050 4.050 4 C -0.059 4.059 5 N -0.501 5.501 6 C 0.195 3.805 7 C 0.150 3.850 8 N -0.542 5.542 9 C 0.042 3.958 10 C 0.217 3.783 11 H 0.015 0.985 12 C -0.161 4.161 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.273 1.273 21 O -0.212 6.212 22 H 0.043 0.957 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.208 0.792 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 -14.389 4.882 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.103 4.103 4 C -0.198 4.198 5 N -0.231 5.231 6 C -0.012 4.012 7 C 0.022 3.978 8 N -0.267 5.267 9 C -0.106 4.106 10 C 0.111 3.889 11 H 0.033 0.967 12 C -0.221 4.221 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.785 3.215 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.198 1.198 21 O -0.099 6.099 22 H 0.062 0.938 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.225 0.775 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.505 -13.753 5.561 18.178 hybrid contribution 0.449 0.013 -1.273 1.350 sum -10.056 -13.740 4.288 17.559 Atomic orbital electron populations 1.21788 0.92825 1.03698 1.02063 1.20292 0.97034 0.83968 1.05843 1.24312 1.04635 0.97413 0.83930 1.23582 1.04926 0.89435 1.01819 1.70422 1.18449 1.24439 1.09796 1.26162 0.98583 0.86191 0.90289 1.20365 0.90534 0.91153 0.95787 1.62219 1.11480 1.05103 1.47891 1.22184 1.01731 0.91629 0.95056 1.19125 0.94176 0.85890 0.89726 0.96674 1.22240 0.97013 1.02145 1.00674 1.21316 0.92364 1.03503 1.38393 0.92701 1.25632 1.02597 0.94917 0.95223 1.69990 1.36890 1.07539 1.41322 0.85544 0.80313 0.77240 0.78444 1.20004 1.20884 1.19759 1.84401 1.64105 1.23657 1.37723 0.93757 0.89081 0.92022 0.89421 0.85988 0.77508 0.87652 0.91436 0.91855 0.92991 0.95228 0.94602 0.91550 0.94916 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.03 -0.52 6.49 29.85 0.19 -0.32 16 3 C -0.05 -1.29 6.64 24.79 0.16 -1.12 16 4 C -0.06 -1.67 11.80 83.39 0.98 -0.69 16 5 N -0.50 -18.46 11.29 -303.83 -3.43 -21.89 16 6 C 0.19 7.11 6.92 88.34 0.61 7.72 16 7 C 0.15 5.73 5.03 85.56 0.43 6.16 16 8 N -0.54 -24.06 4.73 -906.06 -4.29 -28.34 16 9 C 0.04 1.70 8.72 127.69 1.11 2.82 16 10 C 0.22 10.99 2.34 44.17 0.10 11.10 16 11 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 12 C -0.16 -7.61 8.28 71.98 0.60 -7.01 16 13 C -0.52 -28.52 7.94 25.60 0.20 -28.32 16 14 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 15 C 0.02 0.84 5.30 84.66 0.45 1.28 16 16 N -0.92 -52.16 11.32 21.45 0.24 -51.91 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 O -0.21 -6.91 10.04 -3.65 -0.04 -6.95 16 22 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.09 1.26 8.14 -2.38 -0.02 1.25 16 26 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 28 H 0.11 4.02 8.00 -2.39 -0.02 4.00 16 29 H 0.07 2.37 6.94 -2.39 -0.02 2.35 16 30 H 0.06 2.72 6.53 -2.39 -0.02 2.70 16 31 H 0.05 1.94 6.60 -2.39 -0.02 1.92 16 32 H 0.03 1.14 6.28 -2.39 -0.01 1.13 16 33 H 0.03 1.62 6.39 -2.39 -0.02 1.61 16 34 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 35 H 0.03 1.34 6.75 -2.38 -0.02 1.32 16 36 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -64.44 293.02 1.14 -63.31 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.06 Total: 9.55 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.56 Total: -9.53 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -7.48 Total: -102.15 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.04 Total: -6.95 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.44 1.14 -63.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531587182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.386 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds