Wall clock time and date at job start Sun Mar 29 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 C 1.53008 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.42801 * 305.70356 * 12 11 10 14 14 C 1.54616 * 110.48807 * 183.15815 * 12 11 10 15 15 C 1.54480 * 101.76777 * 216.52245 * 14 12 11 16 16 N 1.46768 * 105.47077 * 25.41804 * 15 14 12 17 17 C 1.34657 * 111.33573 * 342.86760 * 16 15 14 18 18 O 1.21275 * 125.07228 * 180.50880 * 17 16 15 19 19 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 20 20 C 1.53004 * 117.49740 * 3.23544 * 19 9 7 21 21 C 1.52995 * 117.49870 * 294.57853 * 19 9 7 22 22 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 23 23 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 24 24 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 25 25 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 26 26 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 27 27 H 1.09000 * 110.97056 * 334.64359 * 14 12 11 28 28 H 1.09000 * 110.97317 * 98.40617 * 14 12 11 29 29 H 1.09001 * 110.24671 * 144.41738 * 15 14 12 30 30 H 1.08994 * 110.24891 * 266.41694 * 15 14 12 31 31 H 0.96991 * 124.35095 * 162.98254 * 16 15 14 32 32 H 1.08999 * 115.55313 * 148.90890 * 19 9 7 33 33 H 1.08998 * 117.50084 * 0.02562 * 20 19 9 34 34 H 1.09000 * 117.49619 * 145.02077 * 20 19 9 35 35 H 1.09002 * 117.50220 * 214.97803 * 21 19 9 36 36 H 1.09001 * 117.50083 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 6 0.1909 -2.4011 4.0358 13 1 -0.3872 -1.4783 3.9873 14 6 0.9274 -2.5078 5.3911 15 6 -0.0717 -3.3371 6.2281 16 7 -0.8499 -4.1117 5.2543 17 6 -0.7275 -3.6031 4.0135 18 8 -1.2713 -4.0435 3.0230 19 6 1.7038 -3.6308 -0.1889 20 6 2.7655 -3.6430 -1.2906 21 6 1.2874 -3.8147 -1.6495 22 1 -0.4849 0.8377 0.0621 23 1 -0.0521 -1.3118 1.5491 24 1 -0.2970 -3.0714 1.4387 25 1 1.6860 -3.4377 2.8816 26 1 1.9309 -1.6781 2.9920 27 1 1.8749 -3.0350 5.2798 28 1 1.0804 -1.5221 5.8306 29 1 0.4644 -4.0067 6.9008 30 1 -0.7275 -2.6770 6.7956 31 1 -1.3854 -4.8895 5.4760 32 1 1.6463 -4.5015 0.4643 33 1 3.2387 -2.6943 -1.5441 34 1 3.4061 -4.5219 -1.3624 35 1 0.9562 -4.8064 -1.9575 36 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572682188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:14 Heat of formation + Delta-G solvation = 7.549408 kcal Electronic energy + Delta-G solvation = -17495.360097 eV Core-core repulsion = 14787.777685 eV Total energy + Delta-G solvation = -2707.582413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07471 -36.88340 -36.06016 -34.01711 -32.43465 -30.35244 -28.53621 -26.09100 -24.07339 -21.78122 -21.56470 -21.13887 -19.62719 -19.20730 -17.10793 -16.37750 -16.08492 -15.24355 -14.66973 -14.35910 -13.96256 -13.55533 -13.43429 -12.92645 -12.78476 -12.26806 -11.90318 -11.73920 -11.48258 -11.10775 -10.95964 -10.68013 -10.57871 -10.47667 -10.08627 -9.96983 -9.60595 -9.49165 -9.13383 -8.98501 -8.88018 -8.32075 -6.42943 -5.66143 -3.27532 2.96433 3.39685 3.45833 3.47339 3.53246 4.51391 4.61351 4.70633 4.89885 5.06692 5.23398 5.40514 5.43676 5.47701 5.67468 5.90669 6.02055 6.05480 6.13493 6.26277 6.44006 6.52732 6.59611 6.68768 6.81273 6.98627 7.04509 7.13688 7.17708 7.33830 7.45544 7.84935 7.97509 8.57877 8.59003 9.27812 9.92030 10.49362 11.27969 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.008361 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.199874 B = 3348.058122 C = 4139.429218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.009 3.991 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.552 5.552 10 C 0.136 3.864 11 C -0.114 4.114 12 C -0.120 4.120 13 H 0.107 0.893 14 C -0.131 4.131 15 C 0.104 3.896 16 N -0.745 5.745 17 C 0.522 3.478 18 O -0.515 6.515 19 C 0.125 3.875 20 C -0.199 4.199 21 C -0.223 4.223 22 H 0.253 0.747 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -5.395 12.479 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.269 5.269 10 C 0.010 3.990 11 C -0.154 4.154 12 C -0.142 4.142 13 H 0.124 0.876 14 C -0.169 4.169 15 C -0.021 4.021 16 N -0.402 5.402 17 C 0.308 3.692 18 O -0.389 6.389 19 C 0.015 3.985 20 C -0.237 4.237 21 C -0.264 4.264 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.843 -5.348 11.859 13.036 hybrid contribution 0.232 0.552 0.191 0.628 sum 1.075 -4.796 12.050 13.014 Atomic orbital electron populations 1.70081 1.05423 1.25851 1.51062 1.25116 0.94925 0.98574 1.00528 0.86515 0.79217 0.83703 0.78252 1.20803 1.21684 1.20964 1.19053 0.94252 0.85703 1.39496 0.91881 1.43458 1.49151 1.01133 1.33130 1.21188 0.90812 1.04062 0.82947 1.22056 0.97196 1.00876 0.95278 1.22013 0.97756 0.97740 0.96677 0.87554 1.22707 0.98371 1.00953 0.94856 1.22000 0.93697 0.94743 0.91640 1.46345 1.51794 1.32783 1.09281 1.21136 0.80943 0.84814 0.82289 1.90739 1.49139 1.64472 1.34574 1.21191 0.99855 0.90448 0.86965 1.23030 0.91923 1.01631 1.07135 1.23345 0.97175 1.00533 1.05342 0.93668 0.88666 0.92932 0.93727 0.91402 0.90032 0.89472 0.90879 0.91543 0.75916 0.89797 0.88592 0.90957 0.91359 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 11.33 55.49 0.63 -25.09 16 2 C 0.01 0.24 4.96 -17.43 -0.09 0.15 16 3 Si 0.89 21.53 29.61 -169.99 -5.03 16.50 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.26 -7.03 8.63 -15.06 -0.13 -7.16 16 8 H 0.06 1.73 6.55 -52.49 -0.34 1.39 16 9 N -0.55 -14.32 2.78 -165.67 -0.46 -14.78 16 10 C 0.14 3.33 5.15 -4.04 -0.02 3.30 16 11 C -0.11 -2.24 4.94 -26.73 -0.13 -2.38 16 12 C -0.12 -1.91 2.95 -90.63 -0.27 -2.17 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.13 -1.46 6.70 -25.11 -0.17 -1.62 16 15 C 0.10 0.96 7.78 -3.12 -0.02 0.93 16 16 N -0.74 -9.09 6.25 -59.14 -0.37 -9.46 16 17 C 0.52 8.86 7.85 -10.75 -0.08 8.78 16 18 O -0.52 -11.08 15.57 5.56 0.09 -11.00 16 19 C 0.12 2.91 6.56 -67.93 -0.45 2.46 16 20 C -0.20 -4.21 9.80 -26.69 -0.26 -4.47 16 21 C -0.22 -4.98 10.36 -26.70 -0.28 -5.25 16 22 H 0.25 7.12 8.32 -40.82 -0.34 6.78 16 23 H 0.10 2.61 5.36 -51.93 -0.28 2.33 16 24 H 0.05 1.36 5.74 -51.93 -0.30 1.06 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.40 4.15 8.96 -40.82 -0.37 3.79 16 32 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.10 2.17 6.37 -51.93 -0.33 1.84 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 2.28 8.14 -51.93 -0.42 1.86 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -32.08 293.16 -8.02 -40.09 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.39 Total: 6.74 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.90 Total: -7.43 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.20 Total: -49.33 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.08 -8.02 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572682188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.643 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds