Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35449 * 126.77915 * 2 1 4 4 C 1.41383 * 103.98811 * 180.09419 * 3 2 1 5 5 C 1.50693 * 126.80198 * 179.88814 * 4 3 2 6 6 N 1.46894 * 109.47450 * 97.28288 * 5 4 3 7 7 C 1.46903 * 111.00407 * 163.62891 * 6 5 4 8 8 C 1.50695 * 109.47456 * 189.81575 * 7 6 5 9 9 H 1.08004 * 120.00047 * 5.07380 * 8 7 6 10 10 C 1.37879 * 120.00441 * 185.07035 * 8 7 6 11 11 N 1.31521 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00548 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47252 * 59.99789 * 12 10 8 14 14 H 1.48498 * 109.47633 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46863 * 300.00285 * 12 10 8 16 16 C 1.46894 * 111.00340 * 287.58994 * 6 5 4 17 17 C 1.52997 * 109.47122 * 323.94631 * 16 6 5 18 18 C 1.53005 * 109.47317 * 83.94720 * 16 6 5 19 19 N 1.30175 * 106.39598 * 359.62714 * 4 3 2 20 20 O 1.20928 * 111.60474 * 0.23726 * 19 4 3 21 21 H 1.09009 * 109.46928 * 180.30221 * 1 2 3 22 22 H 1.08993 * 109.47436 * 300.29948 * 1 2 3 23 23 H 1.08997 * 109.46965 * 60.30473 * 1 2 3 24 24 H 1.08001 * 128.00512 * 359.96291 * 3 2 1 25 25 H 1.09003 * 109.47284 * 337.28440 * 5 4 3 26 26 H 1.09000 * 109.47081 * 217.28604 * 5 4 3 27 27 H 1.08996 * 109.47108 * 309.82601 * 7 6 5 28 28 H 1.09003 * 109.46680 * 69.81964 * 7 6 5 29 29 H 0.96997 * 119.99680 * 179.97438 * 11 10 8 30 30 H 1.09008 * 109.47577 * 203.94586 * 16 6 5 31 31 H 1.09001 * 109.46764 * 66.12829 * 17 16 6 32 32 H 1.08998 * 109.47204 * 186.12441 * 17 16 6 33 33 H 1.08999 * 109.47147 * 306.12718 * 17 16 6 34 34 H 1.08998 * 109.46751 * 65.62216 * 18 16 6 35 35 H 1.09003 * 109.47342 * 185.62359 * 18 16 6 36 36 H 1.09002 * 109.46934 * 305.62177 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9210 1.2999 -0.0056 6 7 5.4351 1.3975 1.3670 7 6 6.8542 1.7772 1.3720 8 6 7.4077 1.6339 2.7663 9 1 6.7934 1.2174 3.5510 10 6 8.6983 2.0343 3.0404 11 7 9.4461 2.5419 2.0849 12 14 9.3846 1.8560 4.7684 13 1 9.3611 0.4252 5.1652 14 1 10.7826 2.3560 4.8000 15 1 8.5555 2.6456 5.7142 16 6 4.6356 2.3382 2.1630 17 6 4.1886 3.5035 1.2781 18 6 3.4050 1.6185 2.7188 19 7 3.4764 -0.7564 0.0048 20 8 2.3095 -1.0737 0.0062 21 1 -0.3633 -1.0277 0.0054 22 1 -0.3634 0.5184 0.8872 23 1 -0.3633 0.5091 -0.8927 24 1 2.0345 2.1270 -0.0006 25 1 4.7538 2.3011 -0.4029 26 1 5.6469 0.7781 -0.6292 27 1 7.4065 1.1276 0.6932 28 1 6.9544 2.8126 1.0461 29 1 10.3539 2.8239 2.2778 30 1 5.2374 2.7188 2.9884 31 1 3.4989 3.1380 0.5172 32 1 3.6891 4.2541 1.8907 33 1 5.0590 3.9484 0.7961 34 1 3.7211 0.8525 3.4269 35 1 2.7611 2.3378 3.2249 36 1 2.8562 1.1525 1.9003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573650242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = 69.485494 kcal Electronic energy + Delta-G solvation = -17560.377320 eV Core-core repulsion = 14855.480657 eV Total energy + Delta-G solvation = -2704.896662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.67029 -38.07398 -33.97060 -33.13579 -32.67500 -30.93914 -27.94047 -27.63991 -26.64163 -24.89572 -22.86515 -22.02062 -20.09646 -18.78322 -17.29695 -16.93432 -16.17215 -15.33920 -14.71756 -14.45486 -14.15834 -13.65827 -13.44509 -13.35468 -12.84170 -12.51510 -12.33353 -12.15871 -11.93365 -11.57652 -11.36019 -11.02132 -10.81379 -10.76077 -10.61214 -10.48442 -10.13718 -9.82977 -9.37779 -9.11273 -8.98611 -8.43193 -7.23618 -6.02154 -4.03144 1.70996 2.55058 3.34516 3.34786 3.38322 3.42061 4.42905 4.56482 4.62032 4.99231 5.14874 5.27315 5.31823 5.33041 5.44924 5.56554 5.65255 5.71158 5.84809 5.97342 6.04747 6.12542 6.17545 6.27496 6.30077 6.39624 6.49782 6.86943 6.87416 7.29548 7.37395 7.82431 8.09038 8.20620 8.53799 8.65842 9.04734 9.60816 11.08463 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040417 B = 0.005958 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.612892 B = 4698.318432 C = 4751.689464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.053 4.053 3 C -0.226 4.226 4 C 0.051 3.949 5 C 0.117 3.883 6 N -0.524 5.524 7 C 0.194 3.806 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.080 3.920 17 C -0.181 4.181 18 C -0.153 4.153 19 N -0.351 5.351 20 O 0.091 5.909 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.167 0.833 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.027 0.973 28 H -0.002 1.002 29 H 0.262 0.738 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 -0.377 -4.367 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C -0.247 4.247 4 C -0.110 4.110 5 C -0.012 4.012 6 N -0.249 5.249 7 C 0.069 3.931 8 C -0.545 4.545 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.029 4.029 17 C -0.240 4.240 18 C -0.210 4.210 19 N -0.056 5.056 20 O 0.025 5.975 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.184 0.816 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.016 0.984 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.107 -1.810 -4.179 16.739 hybrid contribution 0.281 1.582 0.594 1.713 sum -15.826 -0.228 -3.586 16.229 Atomic orbital electron populations 1.20249 0.84605 1.04230 1.03644 1.24378 0.96151 0.86676 1.04395 1.22349 0.91877 1.00658 1.09834 1.23608 0.97116 0.89745 1.00485 1.20502 0.89993 0.97005 0.93750 1.62204 1.05379 1.49436 1.07852 1.19767 0.80740 0.94549 0.98042 1.21094 0.97762 1.40620 0.94983 0.91922 1.24973 0.96930 0.95296 0.97300 1.69949 1.09000 1.42586 1.32296 0.86562 0.77820 0.78561 0.84487 1.20161 1.21353 1.20292 1.21608 0.94290 0.90062 0.96912 1.22511 1.01234 0.99521 1.00721 1.22181 0.97529 1.00140 1.01191 1.73869 0.95952 1.16712 1.19080 1.84852 1.11568 1.33080 1.67963 0.90223 0.89567 0.89637 0.81581 0.92251 0.89977 0.95446 0.98389 0.92877 0.88896 0.92791 0.93019 0.92510 0.92927 0.93851 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.13 16 2 C -0.05 -0.65 7.43 -35.31 -0.26 -0.91 16 3 C -0.23 -3.07 7.53 -39.38 -0.30 -3.37 16 4 C 0.05 0.88 5.16 -82.10 -0.42 0.45 16 5 C 0.12 2.21 5.11 -4.98 -0.03 2.18 16 6 N -0.52 -11.55 4.36 -229.53 -1.00 -12.55 16 7 C 0.19 5.06 4.65 -4.98 -0.02 5.04 16 8 C -0.51 -14.33 8.04 -34.44 -0.28 -14.61 16 9 H 0.06 1.78 7.62 -52.48 -0.40 1.38 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 12 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.08 1.57 2.65 -67.72 -0.18 1.39 16 17 C -0.18 -2.97 7.82 37.16 0.29 -2.68 16 18 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 19 N -0.35 -6.48 12.07 33.42 0.40 -6.08 16 20 O 0.09 1.42 11.20 17.15 0.19 1.62 16 21 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.17 1.89 6.65 -52.49 -0.35 1.55 16 25 H 0.06 1.02 5.45 -51.93 -0.28 0.74 16 26 H 0.08 1.62 7.80 -51.93 -0.41 1.21 16 27 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 28 H 0.00 -0.05 7.47 -51.93 -0.39 -0.43 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 2.07 6.68 -51.92 -0.35 1.72 16 31 H 0.05 0.77 4.03 -51.93 -0.21 0.56 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.01 7.27 -51.93 -0.38 0.63 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.04 3.10 -51.93 -0.16 0.87 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -31.38 286.34 -5.95 -37.34 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.00 Total: -2.08 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.58 Total: -13.43 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.14 Total: -44.64 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.19 Total: 1.62 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.38 -5.95 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573650242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.821 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds