Wall clock time and date at job start Sun Mar 29 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35449 * 126.77915 * 2 1 4 4 C 1.41383 * 103.98811 * 180.09419 * 3 2 1 5 5 C 1.50693 * 126.80198 * 179.88814 * 4 3 2 6 6 N 1.46894 * 109.47450 * 97.28288 * 5 4 3 7 7 C 1.46903 * 111.00407 * 163.62891 * 6 5 4 8 8 C 1.50695 * 109.47456 * 189.81575 * 7 6 5 9 9 H 1.08004 * 120.00047 * 5.07380 * 8 7 6 10 10 C 1.37879 * 120.00441 * 185.07035 * 8 7 6 11 11 N 1.31521 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00548 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47252 * 59.99789 * 12 10 8 14 14 H 1.48498 * 109.47633 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46863 * 300.00285 * 12 10 8 16 16 C 1.46894 * 111.00340 * 287.58994 * 6 5 4 17 17 C 1.52997 * 109.47122 * 323.94631 * 16 6 5 18 18 C 1.53005 * 109.47317 * 83.94720 * 16 6 5 19 19 N 1.30175 * 106.39598 * 359.62714 * 4 3 2 20 20 O 1.20928 * 111.60474 * 0.23726 * 19 4 3 21 21 H 1.09009 * 109.46928 * 180.30221 * 1 2 3 22 22 H 1.08993 * 109.47436 * 300.29948 * 1 2 3 23 23 H 1.08997 * 109.46965 * 60.30473 * 1 2 3 24 24 H 1.08001 * 128.00512 * 359.96291 * 3 2 1 25 25 H 1.09003 * 109.47284 * 337.28440 * 5 4 3 26 26 H 1.09000 * 109.47081 * 217.28604 * 5 4 3 27 27 H 1.08996 * 109.47108 * 309.82601 * 7 6 5 28 28 H 1.09003 * 109.46680 * 69.81964 * 7 6 5 29 29 H 0.96997 * 119.99680 * 179.97438 * 11 10 8 30 30 H 1.09008 * 109.47577 * 203.94586 * 16 6 5 31 31 H 1.09001 * 109.46764 * 66.12829 * 17 16 6 32 32 H 1.08998 * 109.47204 * 186.12441 * 17 16 6 33 33 H 1.08999 * 109.47147 * 306.12718 * 17 16 6 34 34 H 1.08998 * 109.46751 * 65.62216 * 18 16 6 35 35 H 1.09003 * 109.47342 * 185.62359 * 18 16 6 36 36 H 1.09002 * 109.46934 * 305.62177 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9210 1.2999 -0.0056 6 7 5.4351 1.3975 1.3670 7 6 6.8542 1.7772 1.3720 8 6 7.4077 1.6339 2.7663 9 1 6.7934 1.2174 3.5510 10 6 8.6983 2.0343 3.0404 11 7 9.4461 2.5419 2.0849 12 14 9.3846 1.8560 4.7684 13 1 9.3611 0.4252 5.1652 14 1 10.7826 2.3560 4.8000 15 1 8.5555 2.6456 5.7142 16 6 4.6356 2.3382 2.1630 17 6 4.1886 3.5035 1.2781 18 6 3.4050 1.6185 2.7188 19 7 3.4764 -0.7564 0.0048 20 8 2.3095 -1.0737 0.0062 21 1 -0.3633 -1.0277 0.0054 22 1 -0.3634 0.5184 0.8872 23 1 -0.3633 0.5091 -0.8927 24 1 2.0345 2.1270 -0.0006 25 1 4.7538 2.3011 -0.4029 26 1 5.6469 0.7781 -0.6292 27 1 7.4065 1.1276 0.6932 28 1 6.9544 2.8126 1.0461 29 1 10.3539 2.8239 2.2778 30 1 5.2374 2.7188 2.9884 31 1 3.4989 3.1380 0.5172 32 1 3.6891 4.2541 1.8907 33 1 5.0590 3.9484 0.7961 34 1 3.7211 0.8525 3.4269 35 1 2.7611 2.3378 3.2249 36 1 2.8562 1.1525 1.9003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573650242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:12 Heat of formation + Delta-G solvation = 48.222923 kcal Electronic energy + Delta-G solvation = -17561.299334 eV Core-core repulsion = 14855.480657 eV Total energy + Delta-G solvation = -2705.818677 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.89214 -39.68821 -35.41937 -34.61096 -34.15002 -32.58962 -29.72529 -28.54088 -28.05303 -26.67450 -24.11391 -23.94859 -21.43959 -20.22835 -18.56286 -18.39555 -18.03064 -17.06931 -16.41320 -15.99138 -15.64580 -15.00988 -14.66559 -14.20243 -14.12369 -13.91239 -13.81391 -13.54539 -13.33202 -13.08399 -12.90070 -12.70809 -12.57349 -12.42237 -12.16328 -11.95084 -11.82916 -11.54231 -11.41569 -10.66727 -10.53271 -10.04643 -8.99789 -8.22490 -6.32432 0.66685 1.30701 1.38193 1.41328 1.49494 2.37950 2.40692 3.09336 3.23711 3.34644 3.68470 4.11282 4.20115 4.23637 4.30437 4.43737 4.56387 4.58964 4.69753 4.79854 4.81410 4.83353 4.91725 5.00970 5.02972 5.12834 5.15738 5.20074 5.35298 5.39666 5.52999 5.64856 6.04151 6.35607 6.60072 6.83341 7.36711 7.51320 8.87918 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040417 B = 0.005958 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.612892 B = 4698.318432 C = 4751.689464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.034 4.034 3 C -0.231 4.231 4 C 0.032 3.968 5 C 0.119 3.881 6 N -0.538 5.538 7 C 0.211 3.789 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.076 3.924 17 C -0.172 4.172 18 C -0.144 4.144 19 N -0.394 5.394 20 O 0.087 5.913 21 H 0.091 0.909 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.194 0.806 25 H 0.078 0.922 26 H 0.060 0.940 27 H -0.005 1.005 28 H -0.023 1.023 29 H 0.265 0.735 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.967 0.170 -3.695 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C -0.252 4.252 4 C -0.128 4.128 5 C -0.010 4.010 6 N -0.263 5.263 7 C 0.085 3.915 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.191 1.191 16 C -0.032 4.032 17 C -0.230 4.230 18 C -0.201 4.201 19 N -0.099 5.099 20 O 0.021 5.979 21 H 0.110 0.890 22 H 0.125 0.875 23 H 0.129 0.871 24 H 0.211 0.789 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.013 0.987 28 H -0.005 1.005 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.968 -1.262 -3.512 19.331 hybrid contribution 1.064 1.376 0.326 1.770 sum -17.904 0.114 -3.185 18.186 Atomic orbital electron populations 1.20566 0.80491 1.05829 1.05753 1.25311 0.98057 0.85129 1.01187 1.22564 0.89940 1.02290 1.10417 1.23464 0.97560 0.89863 1.01865 1.20425 0.90731 0.98080 0.91764 1.62109 1.03567 1.50474 1.10144 1.19362 0.83417 0.92388 0.96331 1.21340 0.98263 1.40796 0.95677 0.92617 1.25862 0.97126 0.94687 1.01631 1.70071 1.09393 1.43262 1.34490 0.85471 0.77369 0.78665 0.79328 1.19811 1.20473 1.19082 1.21639 0.94350 0.91068 0.96177 1.22405 1.01029 0.98637 1.00957 1.22117 0.96748 1.00082 1.01171 1.73868 0.97653 1.17629 1.20777 1.84802 1.11104 1.34304 1.67692 0.88991 0.87510 0.87118 0.78907 0.90453 0.92122 0.98661 1.00536 0.92602 0.92351 0.90310 0.90449 0.94605 0.95295 0.90674 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 71.23 0.74 0.08 16 2 C -0.03 -0.72 7.43 25.04 0.19 -0.53 16 3 C -0.23 -5.60 7.53 22.40 0.17 -5.43 16 4 C 0.03 1.07 5.16 43.58 0.22 1.30 16 5 C 0.12 4.61 5.11 85.56 0.44 5.05 16 6 N -0.54 -24.57 4.36 -880.10 -3.84 -28.41 16 7 C 0.21 11.67 4.65 85.55 0.40 12.06 16 8 C -0.52 -30.72 8.04 25.60 0.21 -30.52 16 9 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16 10 C 0.01 0.30 5.46 84.65 0.46 0.77 16 11 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 12 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.08 2.98 2.65 44.92 0.12 3.10 16 17 C -0.17 -5.37 7.82 71.98 0.56 -4.80 16 18 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 19 N -0.39 -14.52 12.07 -49.55 -0.60 -15.12 16 20 O 0.09 2.59 11.20 71.54 0.80 3.39 16 21 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 22 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.19 3.51 6.65 -2.91 -0.02 3.49 16 25 H 0.08 2.67 5.45 -2.39 -0.01 2.66 16 26 H 0.06 2.55 7.80 -2.39 -0.02 2.53 16 27 H 0.00 -0.28 7.86 -2.39 -0.02 -0.30 16 28 H -0.02 -1.34 7.47 -2.39 -0.02 -1.36 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.06 2.67 6.68 -2.38 -0.02 2.65 16 31 H 0.08 2.04 4.03 -2.39 -0.01 2.03 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 1.26 7.27 -2.39 -0.02 1.24 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.30 3.10 -2.39 -0.01 2.29 16 Total: -1.00 -71.45 286.34 3.92 -67.53 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.07 Total: 4.82 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.17 Total: -23.04 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.15 Total: -100.21 kcal Atomic # 8 Polarization: 2.59 SS G_CDS: 0.80 Total: 3.39 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.45 3.92 -67.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573650242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.754 kcal (2) G-P(sol) polarization free energy of solvation -71.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds