Wall clock time and date at job start Sun Mar 29 2020 22:10:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35449 * 126.77915 * 2 1
4 4 C 1.41383 * 103.98811 * 180.09419 * 3 2 1
5 5 C 1.50693 * 126.80198 * 179.88814 * 4 3 2
6 6 N 1.46894 * 109.47450 * 97.28288 * 5 4 3
7 7 C 1.46903 * 111.00407 * 163.62891 * 6 5 4
8 8 C 1.50695 * 109.47456 * 189.81575 * 7 6 5
9 9 H 1.08004 * 120.00047 * 5.07380 * 8 7 6
10 10 C 1.37879 * 120.00441 * 185.07035 * 8 7 6
11 11 N 1.31521 * 119.99606 * 0.02562 * 10 8 7
12 12 Si 1.86793 * 120.00548 * 180.02562 * 10 8 7
13 13 H 1.48502 * 109.47252 * 59.99789 * 12 10 8
14 14 H 1.48498 * 109.47633 * 180.02562 * 12 10 8
15 15 H 1.48505 * 109.46863 * 300.00285 * 12 10 8
16 16 C 1.46894 * 111.00340 * 287.58994 * 6 5 4
17 17 C 1.52997 * 109.47122 * 323.94631 * 16 6 5
18 18 C 1.53005 * 109.47317 * 83.94720 * 16 6 5
19 19 N 1.30175 * 106.39598 * 359.62714 * 4 3 2
20 20 O 1.20928 * 111.60474 * 0.23726 * 19 4 3
21 21 H 1.09009 * 109.46928 * 180.30221 * 1 2 3
22 22 H 1.08993 * 109.47436 * 300.29948 * 1 2 3
23 23 H 1.08997 * 109.46965 * 60.30473 * 1 2 3
24 24 H 1.08001 * 128.00512 * 359.96291 * 3 2 1
25 25 H 1.09003 * 109.47284 * 337.28440 * 5 4 3
26 26 H 1.09000 * 109.47081 * 217.28604 * 5 4 3
27 27 H 1.08996 * 109.47108 * 309.82601 * 7 6 5
28 28 H 1.09003 * 109.46680 * 69.81964 * 7 6 5
29 29 H 0.96997 * 119.99680 * 179.97438 * 11 10 8
30 30 H 1.09008 * 109.47577 * 203.94586 * 16 6 5
31 31 H 1.09001 * 109.46764 * 66.12829 * 17 16 6
32 32 H 1.08998 * 109.47204 * 186.12441 * 17 16 6
33 33 H 1.08999 * 109.47147 * 306.12718 * 17 16 6
34 34 H 1.08998 * 109.46751 * 65.62216 * 18 16 6
35 35 H 1.09003 * 109.47342 * 185.62359 * 18 16 6
36 36 H 1.09002 * 109.46934 * 305.62177 * 18 16 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3179 1.0849 0.0000
4 6 3.6214 0.5372 -0.0023
5 6 4.9210 1.2999 -0.0056
6 7 5.4351 1.3975 1.3670
7 6 6.8542 1.7772 1.3720
8 6 7.4077 1.6339 2.7663
9 1 6.7934 1.2174 3.5510
10 6 8.6983 2.0343 3.0404
11 7 9.4461 2.5419 2.0849
12 14 9.3846 1.8560 4.7684
13 1 9.3611 0.4252 5.1652
14 1 10.7826 2.3560 4.8000
15 1 8.5555 2.6456 5.7142
16 6 4.6356 2.3382 2.1630
17 6 4.1886 3.5035 1.2781
18 6 3.4050 1.6185 2.7188
19 7 3.4764 -0.7564 0.0048
20 8 2.3095 -1.0737 0.0062
21 1 -0.3633 -1.0277 0.0054
22 1 -0.3634 0.5184 0.8872
23 1 -0.3633 0.5091 -0.8927
24 1 2.0345 2.1270 -0.0006
25 1 4.7538 2.3011 -0.4029
26 1 5.6469 0.7781 -0.6292
27 1 7.4065 1.1276 0.6932
28 1 6.9544 2.8126 1.0461
29 1 10.3539 2.8239 2.2778
30 1 5.2374 2.7188 2.9884
31 1 3.4989 3.1380 0.5172
32 1 3.6891 4.2541 1.8907
33 1 5.0590 3.9484 0.7961
34 1 3.7211 0.8525 3.4269
35 1 2.7611 2.3378 3.2249
36 1 2.8562 1.1525 1.9003
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000573650242.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:10:12
Heat of formation + Delta-G solvation = 48.222923 kcal
Electronic energy + Delta-G solvation = -17561.299334 eV
Core-core repulsion = 14855.480657 eV
Total energy + Delta-G solvation = -2705.818677 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-45.89214 -39.68821 -35.41937 -34.61096 -34.15002 -32.58962 -29.72529 -28.54088
-28.05303 -26.67450 -24.11391 -23.94859 -21.43959 -20.22835 -18.56286 -18.39555
-18.03064 -17.06931 -16.41320 -15.99138 -15.64580 -15.00988 -14.66559 -14.20243
-14.12369 -13.91239 -13.81391 -13.54539 -13.33202 -13.08399 -12.90070 -12.70809
-12.57349 -12.42237 -12.16328 -11.95084 -11.82916 -11.54231 -11.41569 -10.66727
-10.53271 -10.04643 -8.99789 -8.22490 -6.32432 0.66685 1.30701 1.38193
1.41328 1.49494 2.37950 2.40692 3.09336 3.23711 3.34644 3.68470
4.11282 4.20115 4.23637 4.30437 4.43737 4.56387 4.58964 4.69753
4.79854 4.81410 4.83353 4.91725 5.00970 5.02972 5.12834 5.15738
5.20074 5.35298 5.39666 5.52999 5.64856 6.04151 6.35607 6.60072
6.83341 7.36711 7.51320 8.87918
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.040417 B = 0.005958 C = 0.005891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 692.612892 B = 4698.318432 C = 4751.689464
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C -0.034 4.034
3 C -0.231 4.231
4 C 0.032 3.968
5 C 0.119 3.881
6 N -0.538 5.538
7 C 0.211 3.789
8 C -0.522 4.522
9 H 0.056 0.944
10 C 0.005 3.995
11 N -0.932 5.932
12 Si 0.967 3.033
13 H -0.273 1.273
14 H -0.280 1.280
15 H -0.266 1.266
16 C 0.076 3.924
17 C -0.172 4.172
18 C -0.144 4.144
19 N -0.394 5.394
20 O 0.087 5.913
21 H 0.091 0.909
22 H 0.107 0.893
23 H 0.110 0.890
24 H 0.194 0.806
25 H 0.078 0.922
26 H 0.060 0.940
27 H -0.005 1.005
28 H -0.023 1.023
29 H 0.265 0.735
30 H 0.058 0.942
31 H 0.078 0.922
32 H 0.077 0.923
33 H 0.035 0.965
34 H 0.028 0.972
35 H 0.074 0.926
36 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.967 0.170 -3.695 20.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.097 4.097
3 C -0.252 4.252
4 C -0.128 4.128
5 C -0.010 4.010
6 N -0.263 5.263
7 C 0.085 3.915
8 C -0.561 4.561
9 H 0.074 0.926
10 C -0.193 4.193
11 N -0.572 5.572
12 Si 0.792 3.208
13 H -0.198 1.198
14 H -0.205 1.205
15 H -0.191 1.191
16 C -0.032 4.032
17 C -0.230 4.230
18 C -0.201 4.201
19 N -0.099 5.099
20 O 0.021 5.979
21 H 0.110 0.890
22 H 0.125 0.875
23 H 0.129 0.871
24 H 0.211 0.789
25 H 0.095 0.905
26 H 0.079 0.921
27 H 0.013 0.987
28 H -0.005 1.005
29 H 0.074 0.926
30 H 0.076 0.924
31 H 0.097 0.903
32 H 0.096 0.904
33 H 0.054 0.946
34 H 0.047 0.953
35 H 0.093 0.907
36 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -18.968 -1.262 -3.512 19.331
hybrid contribution 1.064 1.376 0.326 1.770
sum -17.904 0.114 -3.185 18.186
Atomic orbital electron populations
1.20566 0.80491 1.05829 1.05753 1.25311 0.98057 0.85129 1.01187
1.22564 0.89940 1.02290 1.10417 1.23464 0.97560 0.89863 1.01865
1.20425 0.90731 0.98080 0.91764 1.62109 1.03567 1.50474 1.10144
1.19362 0.83417 0.92388 0.96331 1.21340 0.98263 1.40796 0.95677
0.92617 1.25862 0.97126 0.94687 1.01631 1.70071 1.09393 1.43262
1.34490 0.85471 0.77369 0.78665 0.79328 1.19811 1.20473 1.19082
1.21639 0.94350 0.91068 0.96177 1.22405 1.01029 0.98637 1.00957
1.22117 0.96748 1.00082 1.01171 1.73868 0.97653 1.17629 1.20777
1.84802 1.11104 1.34304 1.67692 0.88991 0.87510 0.87118 0.78907
0.90453 0.92122 0.98661 1.00536 0.92602 0.92351 0.90310 0.90449
0.94605 0.95295 0.90674 0.90712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.67 10.45 71.23 0.74 0.08 16
2 C -0.03 -0.72 7.43 25.04 0.19 -0.53 16
3 C -0.23 -5.60 7.53 22.40 0.17 -5.43 16
4 C 0.03 1.07 5.16 43.58 0.22 1.30 16
5 C 0.12 4.61 5.11 85.56 0.44 5.05 16
6 N -0.54 -24.57 4.36 -880.10 -3.84 -28.41 16
7 C 0.21 11.67 4.65 85.55 0.40 12.06 16
8 C -0.52 -30.72 8.04 25.60 0.21 -30.52 16
9 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16
10 C 0.01 0.30 5.46 84.65 0.46 0.77 16
11 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16
12 Si 0.97 45.48 29.54 68.60 2.03 47.51 16
13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16
14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16
15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
16 C 0.08 2.98 2.65 44.92 0.12 3.10 16
17 C -0.17 -5.37 7.82 71.98 0.56 -4.80 16
18 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16
19 N -0.39 -14.52 12.07 -49.55 -0.60 -15.12 16
20 O 0.09 2.59 11.20 71.54 0.80 3.39 16
21 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16
22 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
23 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16
24 H 0.19 3.51 6.65 -2.91 -0.02 3.49 16
25 H 0.08 2.67 5.45 -2.39 -0.01 2.66 16
26 H 0.06 2.55 7.80 -2.39 -0.02 2.53 16
27 H 0.00 -0.28 7.86 -2.39 -0.02 -0.30 16
28 H -0.02 -1.34 7.47 -2.39 -0.02 -1.36 16
29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
30 H 0.06 2.67 6.68 -2.38 -0.02 2.65 16
31 H 0.08 2.04 4.03 -2.39 -0.01 2.03 16
32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
33 H 0.03 1.26 7.27 -2.39 -0.02 1.24 16
34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
36 H 0.07 2.30 3.10 -2.39 -0.01 2.29 16
Total: -1.00 -71.45 286.34 3.92 -67.53
By element:
Atomic # 1 Polarization: 3.74 SS G_CDS: 1.07 Total: 4.82 kcal
Atomic # 6 Polarization: -27.21 SS G_CDS: 4.17 Total: -23.04 kcal
Atomic # 7 Polarization: -96.06 SS G_CDS: -4.15 Total: -100.21 kcal
Atomic # 8 Polarization: 2.59 SS G_CDS: 0.80 Total: 3.39 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal
Total: -71.45 3.92 -67.53 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000573650242.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.754 kcal
(2) G-P(sol) polarization free energy of solvation -71.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds