Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48495 * 109.47084 * 240.00049 * 3 2 1 5 5 H 1.48501 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47084 * 119.99762 * 3 2 1 7 7 C 1.37871 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00084 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99765 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.43288 * 327.53131 * 11 10 9 13 13 C 1.54532 * 110.48206 * 205.00309 * 11 10 9 14 14 C 1.53410 * 103.02730 * 220.54571 * 13 11 10 15 15 H 1.08990 * 110.27432 * 132.90981 * 14 13 11 16 16 C 1.53056 * 111.41244 * 255.69324 * 14 13 11 17 17 C 1.53255 * 108.50553 * 171.60155 * 16 14 13 18 18 C 1.52824 * 110.77303 * 298.01931 * 17 16 14 19 19 C 1.53747 * 109.90843 * 61.56071 * 18 17 16 20 20 N 1.47477 * 107.22753 * 12.78415 * 14 13 11 21 21 C 1.34994 * 110.70425 * 1.03175 * 20 14 13 22 22 O 1.21280 * 125.01102 * 164.52990 * 21 20 14 23 23 H 0.97004 * 120.00034 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47277 * 60.00112 * 9 7 2 25 25 H 1.09000 * 109.47126 * 299.99709 * 9 7 2 26 26 H 1.00907 * 110.99641 * 56.05155 * 10 9 7 27 27 H 1.09003 * 110.70217 * 102.16050 * 13 11 10 28 28 H 1.08992 * 110.70134 * 338.92982 * 13 11 10 29 29 H 1.08993 * 109.63238 * 291.30506 * 16 14 13 30 30 H 1.08997 * 109.62936 * 51.89775 * 16 14 13 31 31 H 1.08995 * 109.21642 * 58.34707 * 17 16 14 32 32 H 1.08999 * 109.21692 * 177.68645 * 17 16 14 33 33 H 1.09004 * 109.39929 * 301.43091 * 18 17 16 34 34 H 1.08997 * 109.32799 * 181.64855 * 18 17 16 35 35 H 1.09002 * 110.03795 * 187.96281 * 19 18 17 36 36 H 1.09001 * 110.04049 * 66.46955 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.5666 -4.8305 0.5498 13 6 2.4011 -6.0076 0.6130 14 6 2.1384 -7.2135 -0.2981 15 1 3.0798 -7.6802 -0.5878 16 6 1.2256 -8.2379 0.3801 17 6 0.8372 -9.3020 -0.6522 18 6 0.0561 -8.6769 -1.8074 19 6 0.9299 -7.6371 -2.5281 20 7 1.4268 -6.7141 -1.4894 21 6 1.2539 -5.3772 -1.4165 22 8 0.9491 -4.6632 -2.3482 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8405 -3.5486 0.7820 27 1 2.0986 -6.2253 1.6374 28 1 3.4507 -5.7163 0.5737 29 1 1.7548 -8.7078 1.2090 30 1 0.3284 -7.7411 0.7492 31 1 1.7409 -9.7703 -1.0420 32 1 0.2199 -10.0605 -0.1707 33 1 -0.8385 -8.1907 -1.4184 34 1 -0.2329 -9.4571 -2.5115 35 1 0.3339 -7.0907 -3.2591 36 1 1.7676 -8.1304 -3.0211 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574804229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = -37.748570 kcal Electronic energy + Delta-G solvation = -17329.632145 eV Core-core repulsion = 14620.085464 eV Total energy + Delta-G solvation = -2709.546680 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46456 -37.09089 -35.56339 -33.61539 -32.28365 -31.74441 -28.45381 -26.57889 -25.51324 -23.04902 -21.91149 -21.43095 -20.45468 -18.93726 -16.49823 -16.07769 -15.69902 -15.28725 -14.75532 -14.57118 -14.27701 -14.02499 -13.71829 -13.12776 -13.03580 -12.88277 -12.34167 -12.06918 -11.81358 -11.68600 -11.27758 -11.10467 -10.85493 -10.84285 -10.75114 -10.58069 -10.47996 -9.84794 -9.39653 -9.02025 -8.41273 -8.37550 -7.32163 -5.94992 -3.96652 3.09483 3.18396 3.38936 3.42662 3.46261 4.47549 4.51368 4.52539 4.67520 4.83216 4.90468 5.03571 5.05346 5.24803 5.40037 5.41418 5.44586 5.58084 5.66528 5.71209 5.73575 5.83386 5.88678 5.89652 6.00855 6.13305 6.23836 6.80714 7.29701 7.43475 7.50139 7.82532 8.18877 8.42042 8.60854 8.72990 9.10858 9.66996 11.16401 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051239 B = 0.005259 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.325551 B = 5322.655049 C = 5544.752743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.669 5.669 11 C 0.058 3.942 12 H 0.075 0.925 13 C -0.130 4.130 14 C 0.136 3.864 15 H 0.078 0.922 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.138 4.138 19 C 0.133 3.867 20 N -0.637 5.637 21 C 0.534 3.466 22 O -0.502 6.502 23 H 0.261 0.739 24 H 0.040 0.960 25 H -0.014 1.014 26 H 0.335 0.665 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -20.157 1.658 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.301 5.301 11 C -0.057 4.057 12 H 0.092 0.908 13 C -0.168 4.168 14 C 0.032 3.968 15 H 0.096 0.904 16 C -0.170 4.170 17 C -0.155 4.155 18 C -0.176 4.176 19 C 0.011 3.989 20 N -0.375 5.375 21 C 0.321 3.679 22 O -0.374 6.374 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.004 0.996 26 H 0.153 0.847 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.218 -19.607 0.352 19.735 hybrid contribution -0.013 0.778 0.902 1.191 sum 2.205 -18.829 1.254 18.999 Atomic orbital electron populations 1.69964 1.06085 1.26803 1.50838 1.24974 0.94867 0.99300 0.95391 0.86533 0.79397 0.82694 0.78583 1.20160 1.21364 1.20308 1.21105 0.93406 0.90198 1.50439 0.92037 1.19697 0.90517 0.86866 0.96259 1.60571 1.21004 0.99753 1.48766 1.22125 0.98022 0.92346 0.93192 0.90780 1.22555 1.01590 0.93738 0.98911 1.21547 0.94943 0.94578 0.85780 0.90417 1.22062 1.00229 0.96678 0.97984 1.21455 1.00182 0.97677 0.96159 1.22022 0.99063 0.98475 0.98039 1.21663 0.97216 0.90260 0.89754 1.48922 1.58792 1.07069 1.22751 1.21209 0.75224 0.80773 0.90736 1.90698 1.45987 1.58424 1.42258 0.92908 0.94193 0.99637 0.84710 0.89623 0.89097 0.90844 0.91212 0.91954 0.91886 0.91519 0.91019 0.89668 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.29 55.43 0.74 -27.20 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.17 9.32 -34.44 -0.32 -15.49 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 5.35 5.26 -4.97 -0.03 5.32 16 10 N -0.67 -14.92 6.28 -107.96 -0.68 -15.60 16 11 C 0.06 1.05 3.31 -67.69 -0.22 0.83 16 12 H 0.07 1.39 7.82 -51.92 -0.41 0.99 16 13 C -0.13 -1.63 6.18 -25.71 -0.16 -1.79 16 14 C 0.14 1.56 3.54 -67.15 -0.24 1.32 16 15 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.13 -1.19 5.36 -26.57 -0.14 -1.33 16 17 C -0.12 -0.95 5.77 -26.69 -0.15 -1.10 16 18 C -0.14 -1.28 6.06 -26.43 -0.16 -1.44 16 19 C 0.13 1.59 7.00 -3.07 -0.02 1.56 16 20 N -0.64 -9.42 2.99 -163.40 -0.49 -9.91 16 21 C 0.53 10.65 7.74 -10.51 -0.08 10.57 16 22 O -0.50 -12.59 17.20 5.56 0.10 -12.49 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.04 1.26 7.56 -51.93 -0.39 0.87 16 25 H -0.01 -0.40 8.08 -51.93 -0.42 -0.82 16 26 H 0.33 6.69 8.31 -39.29 -0.33 6.37 16 27 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 28 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.13 8.02 -51.93 -0.42 0.71 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 292.40 15.07 4.41 4.41 Total: -1.00 -35.06 292.40 -8.28 -43.33 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.71 Total: 0.03 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.62 Total: 0.02 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.43 Total: -52.71 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.10 Total: -12.49 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.06 -8.28 -43.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.586 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds