Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48495 * 109.47084 * 240.00049 * 3 2 1 5 5 H 1.48501 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47084 * 119.99762 * 3 2 1 7 7 C 1.37871 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00084 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99765 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.43288 * 327.53131 * 11 10 9 13 13 C 1.54532 * 110.48206 * 205.00309 * 11 10 9 14 14 C 1.53410 * 103.02730 * 220.54571 * 13 11 10 15 15 H 1.08990 * 110.27432 * 132.90981 * 14 13 11 16 16 C 1.53056 * 111.41244 * 255.69324 * 14 13 11 17 17 C 1.53255 * 108.50553 * 171.60155 * 16 14 13 18 18 C 1.52824 * 110.77303 * 298.01931 * 17 16 14 19 19 C 1.53747 * 109.90843 * 61.56071 * 18 17 16 20 20 N 1.47477 * 107.22753 * 12.78415 * 14 13 11 21 21 C 1.34994 * 110.70425 * 1.03175 * 20 14 13 22 22 O 1.21280 * 125.01102 * 164.52990 * 21 20 14 23 23 H 0.97004 * 120.00034 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47277 * 60.00112 * 9 7 2 25 25 H 1.09000 * 109.47126 * 299.99709 * 9 7 2 26 26 H 1.00907 * 110.99641 * 56.05155 * 10 9 7 27 27 H 1.09003 * 110.70217 * 102.16050 * 13 11 10 28 28 H 1.08992 * 110.70134 * 338.92982 * 13 11 10 29 29 H 1.08993 * 109.63238 * 291.30506 * 16 14 13 30 30 H 1.08997 * 109.62936 * 51.89775 * 16 14 13 31 31 H 1.08995 * 109.21642 * 58.34707 * 17 16 14 32 32 H 1.08999 * 109.21692 * 177.68645 * 17 16 14 33 33 H 1.09004 * 109.39929 * 301.43091 * 18 17 16 34 34 H 1.08997 * 109.32799 * 181.64855 * 18 17 16 35 35 H 1.09002 * 110.03795 * 187.96281 * 19 18 17 36 36 H 1.09001 * 110.04049 * 66.46955 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.5666 -4.8305 0.5498 13 6 2.4011 -6.0076 0.6130 14 6 2.1384 -7.2135 -0.2981 15 1 3.0798 -7.6802 -0.5878 16 6 1.2256 -8.2379 0.3801 17 6 0.8372 -9.3020 -0.6522 18 6 0.0561 -8.6769 -1.8074 19 6 0.9299 -7.6371 -2.5281 20 7 1.4268 -6.7141 -1.4894 21 6 1.2539 -5.3772 -1.4165 22 8 0.9491 -4.6632 -2.3482 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8405 -3.5486 0.7820 27 1 2.0986 -6.2253 1.6374 28 1 3.4507 -5.7163 0.5737 29 1 1.7548 -8.7078 1.2090 30 1 0.3284 -7.7411 0.7492 31 1 1.7409 -9.7703 -1.0420 32 1 0.2199 -10.0605 -0.1707 33 1 -0.8385 -8.1907 -1.4184 34 1 -0.2329 -9.4571 -2.5115 35 1 0.3339 -7.0907 -3.2591 36 1 1.7676 -8.1304 -3.0211 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574804229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = -64.172947 kcal Electronic energy + Delta-G solvation = -17330.777992 eV Core-core repulsion = 14620.085464 eV Total energy + Delta-G solvation = -2710.692527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72026 -38.42897 -37.21252 -35.23851 -33.95480 -32.97420 -29.99018 -27.88186 -27.19238 -24.24919 -23.67601 -22.65596 -21.56987 -20.15747 -18.62213 -17.46608 -17.10205 -16.68608 -16.56533 -15.84983 -15.45694 -15.29207 -14.89265 -14.48261 -14.44993 -14.12739 -14.05689 -13.59030 -13.37006 -13.05482 -12.73041 -12.55128 -12.49696 -12.07293 -11.87393 -11.83051 -11.60876 -11.51904 -11.26831 -10.84465 -10.66012 -9.56233 -9.19514 -8.23080 -6.35271 1.39177 1.45102 1.52343 1.55572 2.00532 2.39906 3.10101 3.35761 3.48785 3.64471 3.88885 3.93295 4.01361 4.11935 4.26149 4.36245 4.38394 4.61453 4.67817 4.79908 4.92062 4.96210 5.04440 5.06368 5.15555 5.19783 5.22621 5.25753 5.49305 5.57477 5.74635 5.97843 6.14891 6.36701 6.68277 6.86520 7.24862 7.35239 8.89227 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051239 B = 0.005259 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.325551 B = 5322.655049 C = 5544.752743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.213 3.787 10 N -0.672 5.672 11 C 0.049 3.951 12 H 0.063 0.937 13 C -0.115 4.115 14 C 0.131 3.869 15 H 0.106 0.894 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.122 3.878 20 N -0.627 5.627 21 C 0.517 3.483 22 O -0.574 6.574 23 H 0.265 0.735 24 H -0.011 1.011 25 H -0.034 1.034 26 H 0.349 0.651 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 -22.211 2.960 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.085 3.915 10 N -0.305 5.305 11 C -0.065 4.065 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.029 3.971 15 H 0.123 0.877 16 C -0.165 4.165 17 C -0.152 4.152 18 C -0.170 4.170 19 C 0.002 3.998 20 N -0.363 5.363 21 C 0.305 3.695 22 O -0.451 6.451 23 H 0.074 0.926 24 H 0.007 0.993 25 H -0.017 1.017 26 H 0.169 0.831 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.237 -21.756 1.694 22.229 hybrid contribution -0.664 1.291 0.469 1.526 sum 3.573 -20.465 2.163 20.886 Atomic orbital electron populations 1.70120 1.08074 1.28104 1.51444 1.26054 0.95831 1.03739 0.94426 0.85294 0.78024 0.77110 0.79280 1.19711 1.20698 1.18229 1.21510 0.93891 0.91284 1.50838 0.91382 1.19211 0.90550 0.88887 0.92834 1.60310 1.20402 1.00137 1.49650 1.22259 0.98798 0.92246 0.93223 0.91906 1.22610 1.00707 0.91518 1.00444 1.21924 0.96370 0.94610 0.84244 0.87654 1.22077 0.99341 0.96132 0.98994 1.21476 1.00989 0.97537 0.95200 1.21997 0.97909 0.98004 0.99052 1.21960 0.98396 0.90136 0.89315 1.49059 1.57339 1.05638 1.24302 1.21582 0.74800 0.82483 0.90619 1.90647 1.49599 1.60589 1.44294 0.92623 0.99273 1.01668 0.83111 0.86482 0.88100 0.87641 0.92676 0.90214 0.90043 0.93356 0.88549 0.92192 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.26 13.29 21.44 0.28 -59.97 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.98 46.38 29.54 68.60 2.03 48.40 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -32.65 9.32 25.60 0.24 -32.41 16 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 9 C 0.21 12.49 5.26 85.56 0.45 12.94 16 10 N -0.67 -30.97 6.28 -495.47 -3.11 -34.08 16 11 C 0.05 1.83 3.31 44.93 0.15 1.98 16 12 H 0.06 2.49 7.82 -2.38 -0.02 2.47 16 13 C -0.11 -2.61 6.18 31.25 0.19 -2.42 16 14 C 0.13 2.60 3.54 44.96 0.16 2.76 16 15 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 16 C -0.13 -1.80 5.36 30.70 0.16 -1.63 16 17 C -0.11 -1.37 5.77 30.62 0.18 -1.20 16 18 C -0.13 -2.16 6.06 30.79 0.19 -1.97 16 19 C 0.12 2.83 7.00 86.43 0.60 3.44 16 20 N -0.63 -18.22 2.99 -789.16 -2.36 -20.58 16 21 C 0.52 21.60 7.74 87.86 0.68 22.28 16 22 O -0.57 -31.04 17.20 -3.03 -0.05 -31.09 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H -0.01 -0.75 7.56 -2.39 -0.02 -0.76 16 25 H -0.03 -2.09 8.08 -2.39 -0.02 -2.11 16 26 H 0.35 14.00 8.31 -89.69 -0.75 13.25 16 27 H 0.12 1.97 7.82 -2.39 -0.02 1.95 16 28 H 0.10 2.14 7.93 -2.39 -0.02 2.13 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.68 8.02 -2.39 -0.02 1.66 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.32 292.40 0.57 -81.75 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.31 Total: 11.51 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 3.46 Total: 4.06 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -5.18 Total: -114.63 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.09 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -82.32 0.57 -81.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.575 kcal (2) G-P(sol) polarization free energy of solvation -82.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds