Wall clock time and date at job start Sun Mar 29 2020 21:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46895 * 111.00014 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43916 * 327.53894 * 11 10 9 13 13 C 1.54717 * 110.48862 * 204.99955 * 11 10 9 14 14 C 1.54042 * 101.55037 * 216.60025 * 13 11 10 15 15 H 1.09005 * 109.81392 * 267.18653 * 14 13 11 16 16 C 1.52229 * 110.56551 * 145.86527 * 14 13 11 17 17 C 1.52691 * 110.36795 * 197.18440 * 16 14 13 18 18 C 1.52871 * 110.27365 * 60.54941 * 17 16 14 19 19 C 1.53114 * 109.56507 * 296.18765 * 18 17 16 20 20 N 1.46537 * 105.94868 * 25.92559 * 14 13 11 21 21 C 1.34794 * 110.76863 * 342.13245 * 20 14 13 22 22 O 1.21283 * 124.87537 * 181.23019 * 21 20 14 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.00903 * 110.99790 * 303.95735 * 10 9 7 27 27 H 1.09009 * 111.00733 * 334.66567 * 13 11 10 28 28 H 1.08999 * 111.00953 * 98.52633 * 13 11 10 29 29 H 1.08997 * 109.31807 * 317.45787 * 16 14 13 30 30 H 1.09000 * 109.32366 * 76.90523 * 16 14 13 31 31 H 1.08993 * 109.33747 * 180.80060 * 17 16 14 32 32 H 1.09000 * 109.33435 * 300.46837 * 17 16 14 33 33 H 1.09008 * 109.45214 * 56.21453 * 18 17 16 34 34 H 1.08997 * 109.45444 * 176.15470 * 18 17 16 35 35 H 1.09002 * 109.63917 * 170.87698 * 19 18 17 36 36 H 1.08997 * 109.63717 * 291.28362 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0013 -2.5790 -0.0106 11 6 5.4697 -2.6181 -0.0163 12 1 5.8711 -1.7656 -0.5642 13 6 5.9737 -3.9443 -0.6335 14 6 7.2127 -4.2369 0.2339 15 1 8.1021 -3.8220 -0.2404 16 6 7.3852 -5.7365 0.4311 17 6 8.3227 -6.0138 1.6040 18 6 7.7467 -5.4268 2.8927 19 6 7.6667 -3.9026 2.7708 20 7 6.9723 -3.5711 1.5169 21 6 6.0041 -2.6407 1.3986 22 8 5.6172 -1.9243 2.2975 23 1 -0.4850 0.8400 -0.0004 24 1 3.8713 -0.6783 -0.8962 25 1 3.8786 -0.6819 0.8837 26 1 3.6290 -3.0968 0.7713 27 1 5.2281 -4.7325 -0.5284 28 1 6.2515 -3.8082 -1.6787 29 1 6.4136 -6.1880 0.6314 30 1 7.8030 -6.1738 -0.4757 31 1 8.4455 -7.0905 1.7212 32 1 9.2933 -5.5594 1.4055 33 1 6.7482 -5.8305 3.0610 34 1 8.3909 -5.6907 3.7314 35 1 7.1108 -3.4962 3.6158 36 1 8.6725 -3.4828 2.7581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574804231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:45 Heat of formation + Delta-G solvation = -38.411976 kcal Electronic energy + Delta-G solvation = -17396.996895 eV Core-core repulsion = 14687.421447 eV Total energy + Delta-G solvation = -2709.575448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72697 -37.38069 -35.66106 -33.82245 -32.44257 -31.92182 -28.86300 -26.77654 -25.77871 -22.98258 -21.72513 -21.20869 -20.82459 -18.97308 -16.93932 -16.59667 -16.27778 -15.09062 -14.80800 -14.62422 -14.24957 -14.07825 -13.69143 -13.50361 -13.14028 -12.76034 -12.48475 -12.39010 -12.20142 -11.69930 -11.32699 -11.25451 -11.07959 -10.86501 -10.74942 -10.60818 -10.35208 -9.79104 -9.71264 -9.24344 -8.59943 -8.53007 -7.51572 -6.00126 -3.97647 2.80654 3.07572 3.34958 3.42160 3.49398 4.34429 4.46545 4.49475 4.55828 4.73524 4.86612 4.91825 5.03137 5.16557 5.24538 5.33232 5.41855 5.47162 5.56706 5.57457 5.67846 5.75484 5.81825 5.83038 6.03421 6.09716 6.22291 6.68214 6.79143 7.15138 7.25745 7.59505 7.82756 8.18119 8.43008 8.66441 9.06199 9.61856 11.13128 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045146 B = 0.005757 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.062684 B = 4862.397148 C = 5068.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.157 3.843 10 N -0.649 5.649 11 C 0.055 3.945 12 H 0.106 0.894 13 C -0.115 4.115 14 C 0.132 3.868 15 H 0.074 0.926 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.135 4.135 19 C 0.126 3.874 20 N -0.619 5.619 21 C 0.485 3.515 22 O -0.522 6.522 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.002 0.998 26 H 0.340 0.660 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.346 -12.106 1.141 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.278 5.278 11 C -0.060 4.060 12 H 0.124 0.876 13 C -0.154 4.154 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.165 4.165 17 C -0.156 4.156 18 C -0.173 4.173 19 C 0.004 3.996 20 N -0.356 5.356 21 C 0.271 3.729 22 O -0.396 6.396 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.020 0.980 26 H 0.158 0.842 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.944 -11.643 1.010 22.259 hybrid contribution 0.645 1.151 0.942 1.621 sum 19.589 -10.492 1.952 22.307 Atomic orbital electron populations 1.69899 1.06146 1.26854 1.51169 1.24861 0.94731 0.98920 0.94651 0.86848 0.80646 0.83823 0.78489 1.20171 1.21179 1.18924 1.21002 0.88791 0.94831 1.50619 0.90346 1.20156 0.96789 0.84543 0.95526 1.60858 1.00923 1.17555 1.48495 1.22465 0.92546 0.99227 0.91748 0.87582 1.22726 0.95660 0.97739 0.99263 1.21395 0.98883 0.93010 0.83890 0.90786 1.21687 1.00842 0.95024 0.98957 1.21359 0.98846 1.00783 0.94578 1.21853 1.02095 0.95234 0.98120 1.21463 0.96858 0.95064 0.86237 1.48597 1.39128 1.38659 1.09189 1.22502 0.78644 0.79194 0.92589 1.90734 1.60282 1.42811 1.45802 0.92688 0.96012 0.98019 0.84208 0.89171 0.89154 0.91094 0.90531 0.91573 0.91924 0.91330 0.90791 0.89748 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.51 13.96 55.43 0.77 -27.73 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 22.60 27.46 -169.99 -4.67 17.93 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.80 6.55 56.52 0.37 -6.43 16 7 C -0.51 -15.29 9.87 -34.44 -0.34 -15.63 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.03 4.33 -4.97 -0.02 4.01 16 10 N -0.65 -13.81 6.30 -107.96 -0.68 -14.49 16 11 C 0.05 0.93 3.26 -67.69 -0.22 0.71 16 12 H 0.11 1.79 7.82 -51.93 -0.41 1.38 16 13 C -0.12 -1.40 6.38 -25.28 -0.16 -1.56 16 14 C 0.13 1.40 3.57 -67.76 -0.24 1.16 16 15 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.13 -1.05 5.45 -27.28 -0.15 -1.20 16 17 C -0.12 -0.89 5.81 -26.96 -0.16 -1.05 16 18 C -0.13 -1.18 6.06 -26.74 -0.16 -1.34 16 19 C 0.13 1.43 6.80 -3.65 -0.02 1.41 16 20 N -0.62 -8.41 3.15 -165.10 -0.52 -8.93 16 21 C 0.48 8.74 7.37 -10.70 -0.08 8.66 16 22 O -0.52 -11.83 16.79 5.55 0.09 -11.73 16 23 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 24 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 25 H 0.00 0.05 6.54 -51.93 -0.34 -0.29 16 26 H 0.34 7.40 8.43 -39.29 -0.33 7.07 16 27 H 0.09 1.12 7.64 -51.92 -0.40 0.72 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -34.36 287.72 -7.96 -42.31 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.64 Total: 1.12 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.65 Total: -2.82 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.43 Total: -51.15 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.36 -7.96 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.902 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds