Wall clock time and date at job start Sun Mar 29 2020 21:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46895 * 111.00014 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43916 * 327.53894 * 11 10 9 13 13 C 1.54717 * 110.48862 * 204.99955 * 11 10 9 14 14 C 1.54042 * 101.55037 * 216.60025 * 13 11 10 15 15 H 1.09005 * 109.81392 * 267.18653 * 14 13 11 16 16 C 1.52229 * 110.56551 * 145.86527 * 14 13 11 17 17 C 1.52691 * 110.36795 * 197.18440 * 16 14 13 18 18 C 1.52871 * 110.27365 * 60.54941 * 17 16 14 19 19 C 1.53114 * 109.56507 * 296.18765 * 18 17 16 20 20 N 1.46537 * 105.94868 * 25.92559 * 14 13 11 21 21 C 1.34794 * 110.76863 * 342.13245 * 20 14 13 22 22 O 1.21283 * 124.87537 * 181.23019 * 21 20 14 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.00903 * 110.99790 * 303.95735 * 10 9 7 27 27 H 1.09009 * 111.00733 * 334.66567 * 13 11 10 28 28 H 1.08999 * 111.00953 * 98.52633 * 13 11 10 29 29 H 1.08997 * 109.31807 * 317.45787 * 16 14 13 30 30 H 1.09000 * 109.32366 * 76.90523 * 16 14 13 31 31 H 1.08993 * 109.33747 * 180.80060 * 17 16 14 32 32 H 1.09000 * 109.33435 * 300.46837 * 17 16 14 33 33 H 1.09008 * 109.45214 * 56.21453 * 18 17 16 34 34 H 1.08997 * 109.45444 * 176.15470 * 18 17 16 35 35 H 1.09002 * 109.63917 * 170.87698 * 19 18 17 36 36 H 1.08997 * 109.63717 * 291.28362 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0013 -2.5790 -0.0106 11 6 5.4697 -2.6181 -0.0163 12 1 5.8711 -1.7656 -0.5642 13 6 5.9737 -3.9443 -0.6335 14 6 7.2127 -4.2369 0.2339 15 1 8.1021 -3.8220 -0.2404 16 6 7.3852 -5.7365 0.4311 17 6 8.3227 -6.0138 1.6040 18 6 7.7467 -5.4268 2.8927 19 6 7.6667 -3.9026 2.7708 20 7 6.9723 -3.5711 1.5169 21 6 6.0041 -2.6407 1.3986 22 8 5.6172 -1.9243 2.2975 23 1 -0.4850 0.8400 -0.0004 24 1 3.8713 -0.6783 -0.8962 25 1 3.8786 -0.6819 0.8837 26 1 3.6290 -3.0968 0.7713 27 1 5.2281 -4.7325 -0.5284 28 1 6.2515 -3.8082 -1.6787 29 1 6.4136 -6.1880 0.6314 30 1 7.8030 -6.1738 -0.4757 31 1 8.4455 -7.0905 1.7212 32 1 9.2933 -5.5594 1.4055 33 1 6.7482 -5.8305 3.0610 34 1 8.3909 -5.6907 3.7314 35 1 7.1108 -3.4962 3.6158 36 1 8.6725 -3.4828 2.7581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574804231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:45 Heat of formation + Delta-G solvation = -64.479972 kcal Electronic energy + Delta-G solvation = -17398.127288 eV Core-core repulsion = 14687.421447 eV Total energy + Delta-G solvation = -2710.705841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90181 -38.56802 -37.18810 -35.29864 -34.13882 -33.16964 -30.38976 -28.09811 -27.14961 -24.05834 -23.20640 -22.69066 -21.87546 -20.04360 -18.97813 -17.98860 -17.55992 -16.50309 -16.41803 -15.75446 -15.51675 -15.18690 -14.92772 -14.65130 -14.47599 -14.31981 -14.08877 -13.93884 -13.43261 -13.19462 -12.65270 -12.53468 -12.30210 -12.07702 -11.89507 -11.77126 -11.62008 -11.53564 -11.33487 -11.18750 -10.82914 -9.69613 -9.24494 -8.33695 -6.37554 1.29636 1.33467 1.42166 1.45714 1.99713 2.31369 3.00412 3.14874 3.50298 3.60221 3.89479 3.95240 4.01645 4.06350 4.20046 4.32333 4.36302 4.57329 4.67735 4.73372 4.84791 4.97412 4.99771 5.05295 5.13700 5.16608 5.19001 5.23602 5.45156 5.48176 5.66549 5.83270 6.05876 6.31680 6.48229 6.67988 7.09976 7.26639 8.82986 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045146 B = 0.005757 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.062684 B = 4862.397148 C = 5068.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.041 0.959 9 C 0.172 3.828 10 N -0.649 5.649 11 C 0.046 3.954 12 H 0.109 0.891 13 C -0.103 4.103 14 C 0.130 3.870 15 H 0.101 0.899 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.129 4.129 19 C 0.117 3.883 20 N -0.608 5.608 21 C 0.473 3.527 22 O -0.583 6.583 23 H 0.269 0.731 24 H 0.032 0.968 25 H -0.019 1.019 26 H 0.332 0.668 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.504 -12.970 0.012 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.059 0.941 9 C 0.043 3.957 10 N -0.278 5.278 11 C -0.068 4.068 12 H 0.127 0.873 13 C -0.141 4.141 14 C 0.027 3.973 15 H 0.119 0.881 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.167 4.167 19 C -0.004 4.004 20 N -0.342 5.342 21 C 0.260 3.740 22 O -0.463 6.463 23 H 0.078 0.922 24 H 0.050 0.950 25 H -0.001 1.001 26 H 0.149 0.851 27 H 0.105 0.895 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.154 -12.575 -0.151 25.475 hybrid contribution -0.318 1.299 1.318 1.877 sum 21.836 -11.276 1.167 24.604 Atomic orbital electron populations 1.70036 1.07932 1.28254 1.52239 1.25795 0.95643 1.03053 0.94056 0.85721 0.78922 0.78755 0.79610 1.17853 1.20337 1.18978 1.21279 0.91083 0.93647 1.50627 0.94110 1.19839 0.94061 0.87014 0.94738 1.60802 1.04092 1.14778 1.48120 1.22694 0.89658 1.02365 0.92070 0.87298 1.22758 0.96046 0.94422 1.00884 1.21721 0.98875 0.94754 0.81928 0.88071 1.21708 1.00885 0.92844 1.00773 1.21374 0.98916 1.01933 0.93018 1.21841 1.01995 0.92732 1.00155 1.21694 0.96955 0.97310 0.84422 1.48734 1.37283 1.37038 1.11164 1.22639 0.79467 0.79609 0.92277 1.90692 1.62595 1.45521 1.47454 0.92224 0.95000 1.00141 0.85062 0.89489 0.86259 0.92201 0.87643 0.89755 0.90578 0.92870 0.88586 0.92343 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.01 0.76 5.47 84.65 0.46 1.22 16 3 Si 0.95 47.11 27.46 68.60 1.88 49.00 16 4 H -0.25 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.27 -13.16 6.55 99.48 0.65 -12.51 16 7 C -0.53 -32.51 9.87 25.60 0.25 -32.25 16 8 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 9 C 0.17 8.98 4.33 85.56 0.37 9.35 16 10 N -0.65 -28.18 6.30 -495.48 -3.12 -31.30 16 11 C 0.05 1.54 3.26 44.93 0.15 1.69 16 12 H 0.11 3.55 7.82 -2.39 -0.02 3.53 16 13 C -0.10 -2.23 6.38 31.53 0.20 -2.03 16 14 C 0.13 2.30 3.57 45.08 0.16 2.46 16 15 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 16 C -0.12 -1.56 5.45 30.24 0.16 -1.40 16 17 C -0.11 -1.24 5.81 30.45 0.18 -1.07 16 18 C -0.13 -1.93 6.06 30.59 0.19 -1.75 16 19 C 0.12 2.52 6.80 86.30 0.59 3.11 16 20 N -0.61 -15.67 3.15 -794.64 -2.50 -18.17 16 21 C 0.47 17.22 7.37 87.83 0.65 17.87 16 22 O -0.58 -27.56 16.79 -3.04 -0.05 -27.61 16 23 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 24 H 0.03 1.60 7.50 -2.39 -0.02 1.58 16 25 H -0.02 -1.08 6.54 -2.38 -0.02 -1.10 16 26 H 0.33 15.14 8.43 -89.69 -0.76 14.38 16 27 H 0.09 1.98 7.64 -2.38 -0.02 1.97 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 0.92 7.77 -2.39 -0.02 0.90 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.56 7.72 -2.39 -0.02 1.55 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.34 287.72 0.12 -78.23 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.25 Total: 13.49 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 3.36 Total: -2.79 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.32 Total: -110.31 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.88 Total: 49.00 kcal Total: -78.34 0.12 -78.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds