Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09009 * 110.43020 * 34.29814 * 11 10 9 13 13 C 1.54528 * 110.48272 * 156.82157 * 11 10 9 14 14 C 1.53413 * 103.02262 * 98.04458 * 13 11 10 15 15 H 1.08995 * 110.27025 * 132.26706 * 14 13 11 16 16 C 1.53047 * 111.41669 * 255.70625 * 14 13 11 17 17 C 1.53245 * 108.50499 * 170.95336 * 16 14 13 18 18 C 1.52818 * 110.77579 * 298.02537 * 17 16 14 19 19 C 1.53738 * 109.91685 * 61.54995 * 18 17 16 20 20 N 1.47481 * 106.67922 * 12.47616 * 14 13 11 21 21 C 1.34019 * 111.50231 * 1.63758 * 20 14 13 22 22 O 1.21275 * 125.48826 * 164.20349 * 21 20 14 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 26 26 H 1.00903 * 111.00126 * 56.04696 * 10 9 7 27 27 H 1.09002 * 110.70740 * 216.42747 * 13 11 10 28 28 H 1.08995 * 110.70591 * 339.48972 * 13 11 10 29 29 H 1.09004 * 109.63308 * 290.66164 * 16 14 13 30 30 H 1.09005 * 109.63446 * 51.25062 * 16 14 13 31 31 H 1.09002 * 109.22080 * 177.68816 * 17 16 14 32 32 H 1.09010 * 109.17983 * 58.33476 * 17 16 14 33 33 H 1.09005 * 109.39399 * 301.40917 * 18 17 16 34 34 H 1.09001 * 109.32473 * 181.64064 * 18 17 16 35 35 H 1.09005 * 110.04182 * 187.96953 * 19 18 17 36 36 H 1.08996 * 110.12390 * 66.51770 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8726 -1.7848 0.5766 13 6 5.9748 -3.9629 0.5706 14 6 6.2698 -4.7839 -0.6913 15 1 7.2517 -5.2513 -0.6168 16 6 5.1857 -5.8351 -0.9403 17 6 5.4191 -6.4568 -2.3214 18 6 5.3019 -5.3996 -3.4186 19 6 6.3729 -4.3152 -3.2176 20 7 6.2359 -3.8427 -1.8262 21 6 6.0006 -2.5883 -1.4172 22 8 6.1836 -1.5869 -2.0763 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6803 -0.8889 25 1 3.8746 -0.6799 0.8911 26 1 3.6261 -3.0951 -0.7807 27 1 6.8824 -3.8168 1.1563 28 1 5.2021 -4.4410 1.1726 29 1 5.2439 -6.6096 -0.1755 30 1 4.2039 -5.3623 -0.9128 31 1 4.6773 -7.2367 -2.4939 32 1 6.4160 -6.8969 -2.3522 33 1 4.3127 -4.9436 -3.3777 34 1 5.4428 -5.8717 -4.3910 35 1 6.2043 -3.4906 -3.9103 36 1 7.3663 -4.7358 -3.3730 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574804232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -36.788317 kcal Electronic energy + Delta-G solvation = -17662.760726 eV Core-core repulsion = 14953.255685 eV Total energy + Delta-G solvation = -2709.505041 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75456 -37.24307 -35.71061 -33.65024 -32.33583 -31.85266 -28.80659 -26.90010 -25.79116 -22.99462 -21.59900 -21.27194 -20.80438 -19.03531 -16.96196 -16.38370 -15.98841 -15.44768 -14.76170 -14.42150 -14.34388 -14.09297 -13.45734 -13.28177 -13.15056 -12.80145 -12.42747 -12.34181 -12.12347 -11.86244 -11.41050 -11.16252 -10.98285 -10.79002 -10.70246 -10.59114 -10.26749 -9.81197 -9.76041 -9.29457 -8.59402 -8.52711 -7.62079 -6.05576 -4.04090 2.78065 3.10748 3.34226 3.40413 3.45617 4.44342 4.45605 4.54817 4.70600 4.84977 4.86387 4.98492 5.08595 5.15057 5.26247 5.28718 5.48335 5.52541 5.63380 5.70498 5.77721 5.89962 5.92259 6.01542 6.05673 6.19795 6.32147 6.66091 6.77121 7.02707 7.32070 7.53542 7.75809 8.11511 8.42176 8.59471 8.99984 9.56186 11.07306 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.006777 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.862971 B = 4130.846062 C = 4266.768538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.157 3.843 10 N -0.642 5.642 11 C 0.054 3.946 12 H 0.103 0.897 13 C -0.122 4.122 14 C 0.132 3.868 15 H 0.079 0.921 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.138 4.138 19 C 0.127 3.873 20 N -0.623 5.623 21 C 0.493 3.507 22 O -0.529 6.529 23 H 0.264 0.736 24 H -0.009 1.009 25 H 0.031 0.969 26 H 0.337 0.663 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.969 -13.556 -2.702 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.273 5.273 11 C -0.060 4.060 12 H 0.121 0.879 13 C -0.160 4.160 14 C 0.028 3.972 15 H 0.097 0.903 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.176 4.176 19 C 0.005 3.995 20 N -0.359 5.359 21 C 0.279 3.721 22 O -0.403 6.403 23 H 0.074 0.926 24 H 0.009 0.991 25 H 0.049 0.951 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.881 -12.928 -2.453 19.126 hybrid contribution 0.528 1.125 -1.057 1.631 sum 14.409 -11.803 -3.510 18.954 Atomic orbital electron populations 1.69896 1.06140 1.26955 1.50832 1.24865 0.94748 0.98971 0.94514 0.86827 0.80317 0.83732 0.78713 1.20224 1.19019 1.21120 1.20985 0.88662 0.94866 1.51086 0.90285 1.20176 0.96797 0.84375 0.95678 1.60951 1.00732 1.17499 1.48161 1.22504 0.92216 0.99113 0.92202 0.87894 1.22498 1.02334 0.95179 0.96008 1.21730 0.98921 0.90409 0.86096 0.90340 1.22053 0.99845 0.98038 0.96989 1.21462 1.01710 0.97709 0.94585 1.22011 1.00035 0.96665 0.98936 1.21748 0.98384 0.97348 0.81980 1.48760 1.72416 1.08161 1.06580 1.22123 0.76103 0.82446 0.91471 1.90690 1.51573 1.34885 1.63151 0.92609 0.99087 0.95124 0.84537 0.90164 0.87850 0.90687 0.90274 0.91672 0.92206 0.91119 0.90994 0.89754 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.52 -15.06 9.87 -34.44 -0.34 -15.40 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.16 3.96 4.35 -4.98 -0.02 3.94 16 10 N -0.64 -13.19 6.27 -107.97 -0.68 -13.86 16 11 C 0.05 0.92 3.29 -67.69 -0.22 0.70 16 12 H 0.10 1.81 7.85 -51.92 -0.41 1.40 16 13 C -0.12 -1.48 6.43 -25.71 -0.17 -1.64 16 14 C 0.13 1.46 3.58 -67.16 -0.24 1.22 16 15 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.13 -1.31 5.36 -26.58 -0.14 -1.45 16 17 C -0.12 -1.04 5.77 -26.70 -0.15 -1.19 16 18 C -0.14 -1.39 6.06 -26.44 -0.16 -1.55 16 19 C 0.13 1.50 6.96 -3.07 -0.02 1.48 16 20 N -0.62 -8.74 2.95 -163.69 -0.48 -9.22 16 21 C 0.49 8.99 7.37 -10.95 -0.08 8.91 16 22 O -0.53 -11.92 17.81 5.56 0.10 -11.83 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H -0.01 -0.23 7.57 -51.93 -0.39 -0.63 16 25 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 26 H 0.34 6.89 8.24 -39.29 -0.32 6.56 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.24 7.73 -51.93 -0.40 0.84 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.12 7.97 -51.93 -0.41 0.71 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 289.66 15.07 4.37 4.37 Total: -1.00 -33.58 289.66 -7.93 -41.51 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.69 Total: 1.38 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.65 Total: -2.98 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.39 Total: -50.32 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.10 Total: -11.83 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.58 -7.93 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.723 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds