Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09009 * 110.43020 * 34.29814 * 11 10 9 13 13 C 1.54528 * 110.48272 * 156.82157 * 11 10 9 14 14 C 1.53413 * 103.02262 * 98.04458 * 13 11 10 15 15 H 1.08995 * 110.27025 * 132.26706 * 14 13 11 16 16 C 1.53047 * 111.41669 * 255.70625 * 14 13 11 17 17 C 1.53245 * 108.50499 * 170.95336 * 16 14 13 18 18 C 1.52818 * 110.77579 * 298.02537 * 17 16 14 19 19 C 1.53738 * 109.91685 * 61.54995 * 18 17 16 20 20 N 1.47481 * 106.67922 * 12.47616 * 14 13 11 21 21 C 1.34019 * 111.50231 * 1.63758 * 20 14 13 22 22 O 1.21275 * 125.48826 * 164.20349 * 21 20 14 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 26 26 H 1.00903 * 111.00126 * 56.04696 * 10 9 7 27 27 H 1.09002 * 110.70740 * 216.42747 * 13 11 10 28 28 H 1.08995 * 110.70591 * 339.48972 * 13 11 10 29 29 H 1.09004 * 109.63308 * 290.66164 * 16 14 13 30 30 H 1.09005 * 109.63446 * 51.25062 * 16 14 13 31 31 H 1.09002 * 109.22080 * 177.68816 * 17 16 14 32 32 H 1.09010 * 109.17983 * 58.33476 * 17 16 14 33 33 H 1.09005 * 109.39399 * 301.40917 * 18 17 16 34 34 H 1.09001 * 109.32473 * 181.64064 * 18 17 16 35 35 H 1.09005 * 110.04182 * 187.96953 * 19 18 17 36 36 H 1.08996 * 110.12390 * 66.51770 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8726 -1.7848 0.5766 13 6 5.9748 -3.9629 0.5706 14 6 6.2698 -4.7839 -0.6913 15 1 7.2517 -5.2513 -0.6168 16 6 5.1857 -5.8351 -0.9403 17 6 5.4191 -6.4568 -2.3214 18 6 5.3019 -5.3996 -3.4186 19 6 6.3729 -4.3152 -3.2176 20 7 6.2359 -3.8427 -1.8262 21 6 6.0006 -2.5883 -1.4172 22 8 6.1836 -1.5869 -2.0763 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6803 -0.8889 25 1 3.8746 -0.6799 0.8911 26 1 3.6261 -3.0951 -0.7807 27 1 6.8824 -3.8168 1.1563 28 1 5.2021 -4.4410 1.1726 29 1 5.2439 -6.6096 -0.1755 30 1 4.2039 -5.3623 -0.9128 31 1 4.6773 -7.2367 -2.4939 32 1 6.4160 -6.8969 -2.3522 33 1 4.3127 -4.9436 -3.3777 34 1 5.4428 -5.8717 -4.3910 35 1 6.2043 -3.4906 -3.9103 36 1 7.3663 -4.7358 -3.3730 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574804232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -61.800711 kcal Electronic energy + Delta-G solvation = -17663.845345 eV Core-core repulsion = 14953.255685 eV Total energy + Delta-G solvation = -2710.589660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95666 -38.49412 -37.23921 -35.23167 -34.02395 -33.08978 -30.31251 -28.26436 -27.19177 -24.12015 -23.28576 -22.55197 -21.92252 -20.15760 -19.06986 -17.72249 -17.35062 -16.80439 -16.41658 -15.81201 -15.43033 -15.24856 -14.98142 -14.53433 -14.35709 -14.23854 -14.15117 -13.97733 -13.36713 -13.25994 -12.79266 -12.48569 -12.41090 -11.94754 -11.83403 -11.81812 -11.55027 -11.52799 -11.44069 -11.22498 -10.86524 -9.64238 -9.32657 -8.36701 -6.40707 1.29118 1.30624 1.36944 1.42005 2.00683 2.28059 2.97343 3.17344 3.46443 3.61874 3.91583 3.97231 3.98999 4.07235 4.20421 4.35979 4.43901 4.61784 4.67874 4.71653 4.83390 4.93948 4.95983 5.01111 5.13506 5.16226 5.22643 5.28678 5.41870 5.52477 5.61505 5.81030 6.10490 6.30090 6.44018 6.65292 7.07378 7.23898 8.79437 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.006777 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.862971 B = 4130.846062 C = 4266.768538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.253 1.253 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.046 0.954 9 C 0.171 3.829 10 N -0.639 5.639 11 C 0.046 3.954 12 H 0.095 0.905 13 C -0.109 4.109 14 C 0.130 3.870 15 H 0.116 0.884 16 C -0.130 4.130 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.120 3.880 20 N -0.614 5.614 21 C 0.481 3.519 22 O -0.586 6.586 23 H 0.269 0.731 24 H -0.028 1.028 25 H 0.033 0.967 26 H 0.334 0.666 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.281 -15.285 -2.213 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.177 1.177 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.064 0.936 9 C 0.043 3.957 10 N -0.269 5.269 11 C -0.068 4.068 12 H 0.113 0.887 13 C -0.147 4.147 14 C 0.028 3.972 15 H 0.134 0.866 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.172 4.172 19 C -0.001 4.001 20 N -0.348 5.348 21 C 0.267 3.733 22 O -0.465 6.465 23 H 0.078 0.922 24 H -0.010 1.010 25 H 0.051 0.949 26 H 0.152 0.848 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.205 -14.735 -1.949 21.989 hybrid contribution -0.206 1.527 -1.245 1.981 sum 16.000 -13.208 -3.195 20.992 Atomic orbital electron populations 1.70015 1.07768 1.28265 1.51943 1.25727 0.95597 1.02783 0.94090 0.85807 0.79550 0.79339 0.78808 1.20305 1.17733 1.19545 1.21236 0.90760 0.93768 1.50795 0.93572 1.19857 0.94257 0.86986 0.94647 1.60884 1.03388 1.14540 1.48066 1.22673 0.89665 1.02145 0.92325 0.88655 1.22537 1.03522 0.91902 0.96779 1.22080 1.01222 0.89775 0.84150 0.86594 1.22068 0.97784 0.98221 0.98782 1.21464 1.03470 0.97169 0.92949 1.21995 0.97696 0.96472 1.01066 1.21990 1.00731 0.97127 0.80225 1.48922 1.70010 1.07358 1.08480 1.22281 0.76178 0.83151 0.91656 1.90647 1.54409 1.36994 1.64446 0.92153 1.01013 0.94924 0.84817 0.87043 0.87399 0.88007 0.93249 0.90712 0.89736 0.94030 0.88611 0.92194 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.02 1.00 5.47 84.65 0.46 1.47 16 3 Si 0.94 46.98 27.47 68.60 1.88 48.87 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.25 -12.06 6.54 99.48 0.65 -11.41 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.53 -31.66 9.87 25.60 0.25 -31.41 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 9 C 0.17 8.80 4.35 85.56 0.37 9.17 16 10 N -0.64 -26.62 6.27 -495.50 -3.11 -29.72 16 11 C 0.05 1.54 3.29 44.93 0.15 1.69 16 12 H 0.10 3.33 7.85 -2.38 -0.02 3.31 16 13 C -0.11 -2.34 6.43 31.25 0.20 -2.14 16 14 C 0.13 2.42 3.58 44.96 0.16 2.58 16 15 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 16 C -0.13 -2.20 5.36 30.69 0.16 -2.04 16 17 C -0.11 -1.60 5.77 30.62 0.18 -1.42 16 18 C -0.13 -2.45 6.06 30.78 0.19 -2.26 16 19 C 0.12 2.64 6.96 86.42 0.60 3.24 16 20 N -0.61 -16.29 2.95 -790.61 -2.33 -18.62 16 21 C 0.48 17.61 7.37 88.02 0.65 18.26 16 22 O -0.59 -27.28 17.81 -3.01 -0.05 -27.34 16 23 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 24 H -0.03 -1.54 7.57 -2.39 -0.02 -1.55 16 25 H 0.03 1.67 7.13 -2.39 -0.02 1.65 16 26 H 0.33 14.15 8.24 -89.69 -0.74 13.41 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.11 2.28 7.73 -2.39 -0.02 2.26 16 29 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.15 7.93 -2.38 -0.02 1.13 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.04 0.99 8.14 -2.38 -0.02 0.98 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.62 7.97 -2.38 -0.02 1.60 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.18 289.66 0.34 -75.84 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.27 Total: 13.32 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 3.38 Total: -2.86 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.14 Total: -107.84 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.87 kcal Total: -76.18 0.34 -75.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574804232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.041 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds