Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99817 * 3 2 1 5 5 H 1.48501 * 109.46862 * 29.99562 * 3 2 1 6 6 H 1.48495 * 109.47132 * 150.00168 * 3 2 1 7 7 C 1.37882 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99806 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99927 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.60108 * 34.67062 * 11 10 9 13 13 C 1.53347 * 109.60147 * 274.18460 * 11 10 9 14 14 C 1.53082 * 108.41217 * 172.69660 * 13 11 10 15 15 C 1.50175 * 109.88719 * 48.91279 * 14 13 11 16 16 O 1.21286 * 118.24712 * 162.39103 * 15 14 13 17 17 N 1.33357 * 123.51193 * 342.42060 * 15 14 13 18 18 C 1.45754 * 124.10435 * 2.19539 * 17 15 14 19 19 H 1.09006 * 109.29928 * 101.26232 * 18 17 15 20 20 C 1.52994 * 109.30415 * 220.64023 * 18 17 15 21 21 C 1.53006 * 117.49827 * 9.65741 * 20 18 17 22 22 C 1.52998 * 60.00189 * 252.51206 * 21 20 18 23 23 H 0.97008 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47516 * 59.99766 * 9 7 2 25 25 H 1.09008 * 109.46655 * 299.99485 * 9 7 2 26 26 H 1.00902 * 111.00001 * 303.94365 * 10 9 7 27 27 H 1.08996 * 109.67399 * 292.44628 * 13 11 10 28 28 H 1.09006 * 109.67476 * 52.97761 * 13 11 10 29 29 H 1.08996 * 109.40372 * 288.78296 * 14 13 11 30 30 H 1.09005 * 109.33315 * 168.99696 * 14 13 11 31 31 H 0.96996 * 117.94834 * 182.22603 * 17 15 14 32 32 H 1.08994 * 115.55394 * 155.36882 * 20 18 17 33 33 H 1.09007 * 117.49759 * 0.02562 * 21 20 18 34 34 H 1.08995 * 117.50261 * 145.02066 * 21 20 18 35 35 H 1.08996 * 117.49751 * 252.51243 * 22 21 20 36 36 H 1.09006 * 117.50055 * 107.48505 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5052 -4.9071 0.0024 12 1 0.5887 -4.8264 -0.5822 13 6 1.1666 -5.3080 1.4433 14 6 0.2822 -6.5568 1.4026 15 6 0.8922 -7.5855 0.4943 16 8 0.5135 -8.7336 0.5911 17 7 1.8286 -7.3042 -0.4126 18 6 2.4085 -5.9810 -0.6053 19 1 3.3865 -5.9429 -0.1254 20 6 2.5740 -5.7144 -2.1027 21 6 1.9283 -6.7063 -3.0724 22 6 3.4484 -6.6840 -2.9004 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8904 26 1 2.8409 -3.5491 -0.7792 27 1 2.0847 -5.5257 1.9890 28 1 0.6314 -4.4952 1.9343 29 1 -0.7071 -6.2880 1.0325 30 1 0.1930 -6.9688 2.4079 31 1 2.1431 -8.0254 -0.9799 32 1 2.5919 -4.6643 -2.3942 33 1 1.3852 -7.5485 -2.6435 34 1 1.5211 -6.3087 -4.0020 35 1 4.0413 -6.2717 -3.7169 36 1 3.9058 -7.5117 -2.3583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580770282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = -17.993067 kcal Electronic energy + Delta-G solvation = -17289.707829 eV Core-core repulsion = 14581.017811 eV Total energy + Delta-G solvation = -2708.690018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55635 -37.99601 -36.14808 -34.08055 -32.64783 -31.73406 -28.82174 -25.92592 -24.69647 -22.52279 -22.39928 -21.18785 -20.76269 -18.86231 -17.23732 -16.54716 -16.05507 -15.68120 -14.90399 -14.73967 -14.64317 -14.08337 -13.87365 -13.63963 -12.85255 -12.63145 -12.07883 -11.88920 -11.70095 -11.61522 -11.41227 -10.97369 -10.92990 -10.71329 -10.53904 -10.34468 -10.18859 -9.99640 -9.55359 -9.25857 -8.99480 -8.55531 -7.47548 -6.09913 -4.12317 2.72832 3.27508 3.28530 3.34456 3.38545 3.71291 4.36329 4.50122 4.60935 4.68671 4.86557 4.93244 5.04505 5.18736 5.26563 5.35292 5.52516 5.55295 5.58817 5.77848 5.85927 5.97773 5.99447 6.00748 6.08850 6.35231 6.50855 6.79876 7.13032 7.30340 7.38243 7.69928 8.03510 8.24467 8.27216 8.47816 8.96590 9.53101 11.01032 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.006065 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.309680 B = 4615.410127 C = 5261.202524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.081 3.919 12 H 0.048 0.952 13 C -0.112 4.112 14 C -0.136 4.136 15 C 0.524 3.476 16 O -0.570 6.570 17 N -0.712 5.712 18 C 0.168 3.832 19 H 0.088 0.912 20 C -0.168 4.168 21 C -0.178 4.178 22 C -0.178 4.178 23 H 0.262 0.738 24 H -0.012 1.012 25 H 0.030 0.970 26 H 0.332 0.668 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -11.475 -2.981 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.311 5.311 11 C -0.030 4.030 12 H 0.066 0.934 13 C -0.150 4.150 14 C -0.176 4.176 15 C 0.312 3.688 16 O -0.450 6.450 17 N -0.364 5.364 18 C 0.063 3.937 19 H 0.106 0.894 20 C -0.187 4.187 21 C -0.215 4.215 22 C -0.215 4.215 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.049 0.951 26 H 0.150 0.850 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.231 0.769 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.933 -11.729 -2.087 12.546 hybrid contribution 0.181 0.822 -1.266 1.520 sum 4.115 -10.907 -3.353 12.130 Atomic orbital electron populations 1.69955 1.06091 1.26899 1.50636 1.24981 0.94866 0.99391 0.95243 0.86486 0.79820 0.83000 0.78041 1.20737 1.21229 1.19733 1.21155 0.93533 0.90140 1.50687 0.91899 1.19615 0.90478 0.87048 0.95960 1.60748 1.21001 1.00263 1.49071 1.21663 0.95656 0.90310 0.95374 0.93404 1.21690 0.99788 0.96196 0.97317 1.21683 1.00842 0.95105 0.99999 1.20327 0.78397 0.89660 0.80426 1.90723 1.61591 1.21878 1.70775 1.45672 1.41116 1.11850 1.37768 1.20671 0.97669 0.82133 0.93266 0.89404 1.22804 1.05506 0.97991 0.92353 1.22999 0.95470 1.02046 1.01035 1.22990 0.93450 1.01998 1.03095 0.92841 0.99450 0.95144 0.85009 0.90959 0.89734 0.88303 0.88235 0.76914 0.86092 0.88594 0.88596 0.88419 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.89 9.32 -34.44 -0.32 -14.22 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.20 4.76 5.24 -4.98 -0.03 4.73 16 10 N -0.68 -12.94 6.30 -107.84 -0.68 -13.62 16 11 C 0.08 1.28 1.94 -67.57 -0.13 1.15 16 12 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 13 C -0.11 -1.65 5.58 -26.51 -0.15 -1.79 16 14 C -0.14 -1.82 6.03 -28.09 -0.17 -1.99 16 15 C 0.52 7.77 7.71 -11.87 -0.09 7.68 16 16 O -0.57 -10.27 17.78 5.55 0.10 -10.17 16 17 N -0.71 -9.08 4.25 -54.85 -0.23 -9.31 16 18 C 0.17 2.16 2.95 -68.38 -0.20 1.96 16 19 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.17 -1.99 5.37 -90.62 -0.49 -2.48 16 21 C -0.18 -1.92 9.69 -26.73 -0.26 -2.18 16 22 C -0.18 -1.73 9.90 -26.73 -0.26 -2.00 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H -0.01 -0.32 8.06 -51.93 -0.42 -0.74 16 25 H 0.03 0.80 7.42 -51.92 -0.39 0.41 16 26 H 0.33 5.97 6.90 -39.29 -0.27 5.70 16 27 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 28 H 0.08 1.37 7.41 -51.93 -0.38 0.99 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 4.60 6.67 -40.82 -0.27 4.32 16 32 H 0.12 1.58 6.97 -51.93 -0.36 1.22 16 33 H 0.10 1.06 6.41 -51.92 -0.33 0.72 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -30.06 292.15 -8.21 -38.28 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.32 Total: 7.31 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.20 Total: -7.67 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.18 Total: -48.12 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.06 -8.21 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.283 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds