Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99817 * 3 2 1 5 5 H 1.48501 * 109.46862 * 29.99562 * 3 2 1 6 6 H 1.48495 * 109.47132 * 150.00168 * 3 2 1 7 7 C 1.37882 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99806 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99927 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.60108 * 34.67062 * 11 10 9 13 13 C 1.53347 * 109.60147 * 274.18460 * 11 10 9 14 14 C 1.53082 * 108.41217 * 172.69660 * 13 11 10 15 15 C 1.50175 * 109.88719 * 48.91279 * 14 13 11 16 16 O 1.21286 * 118.24712 * 162.39103 * 15 14 13 17 17 N 1.33357 * 123.51193 * 342.42060 * 15 14 13 18 18 C 1.45754 * 124.10435 * 2.19539 * 17 15 14 19 19 H 1.09006 * 109.29928 * 101.26232 * 18 17 15 20 20 C 1.52994 * 109.30415 * 220.64023 * 18 17 15 21 21 C 1.53006 * 117.49827 * 9.65741 * 20 18 17 22 22 C 1.52998 * 60.00189 * 252.51206 * 21 20 18 23 23 H 0.97008 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47516 * 59.99766 * 9 7 2 25 25 H 1.09008 * 109.46655 * 299.99485 * 9 7 2 26 26 H 1.00902 * 111.00001 * 303.94365 * 10 9 7 27 27 H 1.08996 * 109.67399 * 292.44628 * 13 11 10 28 28 H 1.09006 * 109.67476 * 52.97761 * 13 11 10 29 29 H 1.08996 * 109.40372 * 288.78296 * 14 13 11 30 30 H 1.09005 * 109.33315 * 168.99696 * 14 13 11 31 31 H 0.96996 * 117.94834 * 182.22603 * 17 15 14 32 32 H 1.08994 * 115.55394 * 155.36882 * 20 18 17 33 33 H 1.09007 * 117.49759 * 0.02562 * 21 20 18 34 34 H 1.08995 * 117.50261 * 145.02066 * 21 20 18 35 35 H 1.08996 * 117.49751 * 252.51243 * 22 21 20 36 36 H 1.09006 * 117.50055 * 107.48505 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5052 -4.9071 0.0024 12 1 0.5887 -4.8264 -0.5822 13 6 1.1666 -5.3080 1.4433 14 6 0.2822 -6.5568 1.4026 15 6 0.8922 -7.5855 0.4943 16 8 0.5135 -8.7336 0.5911 17 7 1.8286 -7.3042 -0.4126 18 6 2.4085 -5.9810 -0.6053 19 1 3.3865 -5.9429 -0.1254 20 6 2.5740 -5.7144 -2.1027 21 6 1.9283 -6.7063 -3.0724 22 6 3.4484 -6.6840 -2.9004 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8904 26 1 2.8409 -3.5491 -0.7792 27 1 2.0847 -5.5257 1.9890 28 1 0.6314 -4.4952 1.9343 29 1 -0.7071 -6.2880 1.0325 30 1 0.1930 -6.9688 2.4079 31 1 2.1431 -8.0254 -0.9799 32 1 2.5919 -4.6643 -2.3942 33 1 1.3852 -7.5485 -2.6435 34 1 1.5211 -6.3087 -4.0020 35 1 4.0413 -6.2717 -3.7169 36 1 3.9058 -7.5117 -2.3583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580770282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = -38.762008 kcal Electronic energy + Delta-G solvation = -17290.608438 eV Core-core repulsion = 14581.017811 eV Total energy + Delta-G solvation = -2709.590626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72669 -39.16097 -37.42433 -35.60999 -34.34989 -33.09984 -30.32556 -27.65504 -25.91509 -24.10836 -23.32260 -22.71072 -21.77507 -20.11146 -18.57950 -18.28430 -17.34656 -16.82718 -16.52765 -16.11542 -15.94210 -15.37019 -15.11644 -14.86894 -14.50343 -14.25997 -13.64911 -13.24431 -13.13309 -12.85482 -12.62329 -12.48317 -12.41506 -12.15167 -11.99553 -11.87894 -11.28305 -11.22812 -11.19729 -10.74946 -10.63767 -10.13900 -9.15908 -8.20315 -6.30538 1.43958 1.45189 1.53777 1.56647 2.17394 2.42454 2.81381 3.14143 3.32342 3.50809 3.55814 3.73704 3.95233 4.04859 4.10862 4.17950 4.36512 4.50296 4.55405 4.74252 4.79375 4.86411 4.98610 5.06619 5.13718 5.15339 5.20977 5.25980 5.32249 5.64653 5.73119 6.04111 6.22171 6.44144 6.72544 6.91510 7.11741 7.40507 8.91050 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.006065 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.309680 B = 4615.410127 C = 5261.202524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.212 3.788 10 N -0.672 5.672 11 C 0.080 3.920 12 H 0.030 0.970 13 C -0.106 4.106 14 C -0.129 4.129 15 C 0.524 3.476 16 O -0.602 6.602 17 N -0.698 5.698 18 C 0.181 3.819 19 H 0.099 0.901 20 C -0.187 4.187 21 C -0.181 4.181 22 C -0.154 4.154 23 H 0.264 0.736 24 H -0.040 1.040 25 H 0.005 0.995 26 H 0.339 0.661 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.403 0.597 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -11.845 -3.324 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.085 3.915 10 N -0.304 5.304 11 C -0.031 4.031 12 H 0.048 0.952 13 C -0.145 4.145 14 C -0.169 4.169 15 C 0.312 3.688 16 O -0.484 6.484 17 N -0.350 5.350 18 C 0.076 3.924 19 H 0.117 0.883 20 C -0.206 4.206 21 C -0.218 4.218 22 C -0.191 4.191 23 H 0.073 0.927 24 H -0.022 1.022 25 H 0.023 0.977 26 H 0.159 0.841 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.241 0.759 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.642 -12.111 -2.449 13.583 hybrid contribution -0.353 0.906 -1.181 1.530 sum 5.288 -11.205 -3.630 12.912 Atomic orbital electron populations 1.70085 1.07772 1.27893 1.51658 1.25897 0.95690 1.03237 0.94750 0.85383 0.78594 0.78271 0.78363 1.19855 1.21100 1.18768 1.21548 0.93915 0.91325 1.50312 0.91498 1.19215 0.90485 0.88436 0.93412 1.60587 1.20017 1.00319 1.49467 1.21691 0.95376 0.89769 0.96251 0.95198 1.21617 1.00270 0.96216 0.96366 1.21652 1.00473 0.93980 1.00839 1.20474 0.78411 0.89276 0.80602 1.90716 1.62780 1.23062 1.71857 1.45541 1.40356 1.11980 1.37164 1.20491 0.96961 0.80968 0.94013 0.88309 1.22687 1.08260 0.97845 0.91795 1.23032 0.96714 1.01392 1.00663 1.23092 0.92718 1.00943 1.02355 0.92737 1.02190 0.97682 0.84137 0.90017 0.91624 0.87999 0.86528 0.75857 0.87505 0.88754 0.88376 0.87184 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 42.85 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.53 -28.85 9.32 25.60 0.24 -28.61 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.21 10.63 5.24 85.56 0.45 11.07 16 10 N -0.67 -25.71 6.30 -495.09 -3.12 -28.83 16 11 C 0.08 2.52 1.94 45.00 0.09 2.60 16 12 H 0.03 1.07 7.77 -2.39 -0.02 1.05 16 13 C -0.11 -3.10 5.58 30.74 0.17 -2.93 16 14 C -0.13 -3.35 6.03 29.71 0.18 -3.17 16 15 C 0.52 14.88 7.71 87.71 0.68 15.56 16 16 O -0.60 -21.01 17.78 -3.05 -0.05 -21.06 16 17 N -0.70 -16.64 4.25 -446.64 -1.90 -18.54 16 18 C 0.18 4.39 2.95 45.10 0.13 4.52 16 19 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 20 C -0.19 -4.18 5.37 -10.79 -0.06 -4.23 16 21 C -0.18 -3.59 9.69 30.60 0.30 -3.29 16 22 C -0.15 -2.56 9.90 30.60 0.30 -2.26 16 23 H 0.26 14.64 8.31 -92.70 -0.77 13.86 16 24 H -0.04 -2.16 8.06 -2.39 -0.02 -2.18 16 25 H 0.01 0.28 7.42 -2.38 -0.02 0.26 16 26 H 0.34 12.11 6.90 -89.69 -0.62 11.49 16 27 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.07 2.17 7.41 -2.38 -0.02 2.16 16 29 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.40 8.51 6.67 -92.71 -0.62 7.89 16 32 H 0.11 2.74 6.97 -2.39 -0.02 2.72 16 33 H 0.09 1.91 6.41 -2.38 -0.02 1.90 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.50 7.91 -2.38 -0.02 1.48 16 Total: -1.00 -64.27 292.15 0.03 -64.24 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.15 Total: 24.06 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 2.94 Total: -10.13 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.73 Total: -101.98 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.27 0.03 -64.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.481 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds