Wall clock time and date at job start Sun Mar 29 2020 21:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46835 * 240.00172 * 3 2 1 5 5 H 1.48497 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47311 * 120.00037 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99901 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00059 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.73790 * 34.59037 * 11 10 9 13 13 C 1.53354 * 109.60213 * 274.18258 * 11 10 9 14 14 C 1.53062 * 108.42523 * 172.71262 * 13 11 10 15 15 C 1.50173 * 109.89264 * 48.89981 * 14 13 11 16 16 O 1.21279 * 118.24591 * 162.43506 * 15 14 13 17 17 N 1.33085 * 123.42601 * 342.23380 * 15 14 13 18 18 C 1.45758 * 124.30989 * 2.60627 * 17 15 14 19 19 H 1.09002 * 109.30363 * 220.38993 * 18 17 15 20 20 C 1.53004 * 109.30057 * 100.80577 * 18 17 15 21 21 C 1.52997 * 117.49767 * 128.20709 * 20 18 17 22 22 C 1.52999 * 60.00110 * 252.51205 * 21 20 18 23 23 H 0.97005 * 119.99488 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47147 * 60.00076 * 9 7 2 25 25 H 1.08996 * 109.46944 * 299.99935 * 9 7 2 26 26 H 1.00902 * 110.99942 * 303.95668 * 10 9 7 27 27 H 1.08994 * 109.67220 * 292.45109 * 13 11 10 28 28 H 1.09000 * 109.66886 * 52.94343 * 13 11 10 29 29 H 1.08999 * 109.40028 * 169.03162 * 14 13 11 30 30 H 1.08997 * 109.40286 * 288.85857 * 14 13 11 31 31 H 0.97007 * 117.74937 * 182.38407 * 17 15 14 32 32 H 1.08993 * 115.55021 * 273.91818 * 20 18 17 33 33 H 1.09008 * 117.49981 * 0.02562 * 21 20 18 34 34 H 1.08996 * 117.50155 * 145.01913 * 21 20 18 35 35 H 1.08996 * 117.49599 * 252.51173 * 22 21 20 36 36 H 1.09000 * 117.51632 * 107.48337 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 1 0.5881 -4.8280 -0.5822 13 6 1.1658 -5.3088 1.4417 14 6 0.2819 -6.5577 1.4000 15 6 0.8925 -7.5858 0.4915 16 8 0.5133 -8.7338 0.5871 17 7 1.8246 -7.3019 -0.4150 18 6 2.4091 -5.9805 -0.6064 19 1 2.5278 -5.7900 -1.6731 20 6 3.7798 -5.9308 0.0717 21 6 4.9648 -5.4448 -0.7653 22 6 4.8398 -6.9263 -0.4040 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6241 -2.5566 0.8903 26 1 2.8411 -3.5489 -0.7791 27 1 2.0836 -5.5267 1.9878 28 1 0.6308 -4.4960 1.9329 29 1 0.1910 -6.9706 2.4047 30 1 -0.7068 -6.2893 1.0281 31 1 2.1368 -8.0237 -0.9831 32 1 3.7714 -5.6723 1.1305 33 1 4.7678 -5.1601 -1.7989 34 1 5.7362 -4.8662 -0.2572 35 1 5.5290 -7.3223 0.3418 36 1 4.5606 -7.6168 -1.1998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580770283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:15 Heat of formation + Delta-G solvation = -20.478080 kcal Electronic energy + Delta-G solvation = -17326.089558 eV Core-core repulsion = 14617.291783 eV Total energy + Delta-G solvation = -2708.797776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46442 -37.95292 -35.86577 -34.17263 -32.73094 -31.75982 -28.71579 -25.86815 -24.35725 -22.64337 -22.08964 -21.52812 -21.05437 -18.21530 -17.22908 -16.51160 -16.06851 -15.48059 -15.30378 -14.65450 -14.50382 -14.10627 -13.85997 -13.11400 -12.95851 -12.75056 -12.19109 -11.75502 -11.59538 -11.50181 -11.37760 -10.92888 -10.83804 -10.73176 -10.55715 -10.17873 -10.06280 -9.93170 -9.53022 -9.25535 -9.01034 -8.53702 -7.44204 -6.08824 -4.11108 2.76022 3.27501 3.29813 3.34475 3.37040 3.98458 4.36953 4.56442 4.66159 4.77189 4.97806 5.03553 5.18250 5.20175 5.27656 5.40908 5.56281 5.59924 5.66797 5.80739 5.90843 5.97850 6.02113 6.15560 6.30433 6.34842 6.55741 6.84375 7.14433 7.31778 7.42040 7.71184 8.05164 8.27591 8.31449 8.49973 8.97662 9.54188 11.02157 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.006247 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.338771 B = 4480.992188 C = 5234.923017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.672 5.672 11 C 0.080 3.920 12 H 0.046 0.954 13 C -0.112 4.112 14 C -0.137 4.137 15 C 0.524 3.476 16 O -0.571 6.571 17 N -0.707 5.707 18 C 0.167 3.833 19 H 0.081 0.919 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.186 4.186 23 H 0.262 0.738 24 H -0.014 1.014 25 H 0.030 0.970 26 H 0.332 0.668 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.394 0.606 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -11.110 -0.992 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.304 5.304 11 C -0.031 4.031 12 H 0.064 0.936 13 C -0.150 4.150 14 C -0.177 4.177 15 C 0.312 3.688 16 O -0.451 6.451 17 N -0.357 5.357 18 C 0.061 3.939 19 H 0.099 0.901 20 C -0.168 4.168 21 C -0.202 4.202 22 C -0.223 4.223 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.048 0.952 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.229 0.771 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.584 -11.359 -0.113 12.658 hybrid contribution 0.240 0.787 -1.177 1.436 sum 5.824 -10.572 -1.290 12.139 Atomic orbital electron populations 1.69947 1.06085 1.26982 1.50647 1.24977 0.94860 0.99361 0.95280 0.86549 0.79428 0.82692 0.78649 1.20283 1.21364 1.20144 1.21112 0.93488 0.90134 1.50672 0.91945 1.19623 0.90524 0.87175 0.95872 1.60710 1.20653 0.99942 1.49078 1.21663 0.95195 0.90473 0.95746 0.93594 1.21711 0.99763 0.96119 0.97408 1.21681 1.00802 0.95189 1.00041 1.20226 0.78626 0.89588 0.80349 1.90721 1.61947 1.21852 1.70600 1.45437 1.40615 1.12076 1.37530 1.20742 0.91627 0.82363 0.99120 0.90129 1.22622 0.89497 1.03797 1.00868 1.22917 1.00512 0.96137 1.00600 1.22887 1.02954 0.92859 1.03644 0.92804 0.99577 0.95180 0.85015 0.90850 0.89875 0.88330 0.88383 0.77109 0.86642 0.88854 0.88438 0.89082 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.82 9.32 -34.44 -0.32 -14.14 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.19 4.72 5.24 -4.98 -0.03 4.69 16 10 N -0.67 -12.63 5.69 -107.84 -0.61 -13.24 16 11 C 0.08 1.25 2.26 -67.57 -0.15 1.10 16 12 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 13 C -0.11 -1.64 5.52 -26.52 -0.15 -1.78 16 14 C -0.14 -1.84 6.03 -28.11 -0.17 -2.00 16 15 C 0.52 7.79 7.71 -11.99 -0.09 7.69 16 16 O -0.57 -10.36 17.78 5.56 0.10 -10.26 16 17 N -0.71 -8.94 4.88 -54.91 -0.27 -9.21 16 18 C 0.17 2.11 2.93 -68.37 -0.20 1.91 16 19 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 20 C -0.15 -1.79 4.30 -90.62 -0.39 -2.18 16 21 C -0.16 -1.80 9.97 -26.73 -0.27 -2.06 16 22 C -0.19 -1.90 10.11 -26.73 -0.27 -2.17 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H -0.01 -0.35 8.06 -51.93 -0.42 -0.77 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 26 H 0.33 5.96 7.94 -39.29 -0.31 5.65 16 27 H 0.07 1.04 6.40 -51.93 -0.33 0.71 16 28 H 0.08 1.35 7.41 -51.93 -0.38 0.96 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.39 4.47 8.79 -40.82 -0.36 4.11 16 32 H 0.12 1.56 6.55 -51.93 -0.34 1.22 16 33 H 0.09 0.97 8.05 -51.92 -0.42 0.55 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 294.48 15.07 4.44 4.44 Total: -1.00 -30.04 294.48 -8.18 -38.23 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.42 Total: 6.77 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.13 Total: -7.48 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.15 Total: -47.67 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.04 -8.18 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.749 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds