Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.60745 * 324.99899 * 11 10 9 13 13 C 1.53342 * 109.60487 * 85.32409 * 11 10 9 14 14 C 1.53376 * 108.27500 * 52.42715 * 13 11 10 15 15 C 1.50179 * 109.98923 * 48.74191 * 14 13 11 16 16 O 1.21284 * 118.24232 * 162.43398 * 15 14 13 17 17 N 1.33347 * 123.51042 * 342.45342 * 15 14 13 18 18 C 1.45759 * 124.10420 * 2.24566 * 17 15 14 19 19 H 1.09001 * 109.13264 * 101.11082 * 18 17 15 20 20 C 1.53009 * 109.29837 * 220.58976 * 18 17 15 21 21 C 1.53002 * 117.49725 * 9.66247 * 20 18 17 22 22 C 1.52995 * 117.49754 * 301.03694 * 20 18 17 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.00895 * 111.00143 * 56.04990 * 10 9 7 27 27 H 1.09001 * 109.67404 * 171.95588 * 13 11 10 28 28 H 1.09001 * 109.67569 * 292.49003 * 13 11 10 29 29 H 1.09000 * 109.32116 * 288.60298 * 14 13 11 30 30 H 1.08998 * 109.31115 * 168.87809 * 14 13 11 31 31 H 0.96999 * 117.95058 * 182.22616 * 17 15 14 32 32 H 1.08996 * 115.55009 * 155.36971 * 20 18 17 33 33 H 1.08998 * 117.50169 * 359.97438 * 21 20 18 34 34 H 1.08996 * 117.49486 * 145.02256 * 21 20 18 35 35 H 1.09003 * 117.49909 * 214.97682 * 22 20 18 36 36 H 1.09000 * 117.50381 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5913 -4.8277 0.5875 13 6 1.1570 -5.3028 -1.4411 14 6 2.4367 -5.2283 -2.2833 15 6 3.5533 -5.9503 -1.5853 16 8 4.5261 -6.2686 -2.2360 17 7 3.5324 -6.2604 -0.2886 18 6 2.4111 -5.9823 0.6003 19 1 1.8364 -6.8967 0.7472 20 6 2.9441 -5.4975 1.9501 21 6 4.4378 -5.1807 2.0474 22 6 3.8764 -6.4354 2.7195 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8405 -3.5488 0.7808 27 1 0.7673 -6.3206 -1.4579 28 1 0.4097 -4.6166 -1.8397 29 1 2.7142 -4.1839 -2.4260 30 1 2.2570 -5.6911 -3.2537 31 1 4.3121 -6.6988 0.0867 32 1 2.2594 -4.8801 2.5316 33 1 5.0409 -5.3180 1.1499 34 1 4.7360 -4.3546 2.6929 35 1 3.8054 -6.4346 3.8073 36 1 4.1105 -7.3975 2.2640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580770284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = -16.214336 kcal Electronic energy + Delta-G solvation = -17652.062529 eV Core-core repulsion = 14943.449643 eV Total energy + Delta-G solvation = -2708.612886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44458 -37.83495 -36.02151 -33.79770 -32.51499 -31.34167 -28.89781 -25.97455 -24.75467 -22.50102 -22.25802 -21.13161 -20.66101 -18.35409 -17.03755 -16.43808 -16.00530 -15.52580 -14.88684 -14.72018 -14.44879 -13.96984 -13.73438 -13.50525 -12.68001 -12.46034 -12.13465 -11.83012 -11.70846 -11.48951 -11.09544 -10.98120 -10.80431 -10.63282 -10.52902 -10.19056 -10.13140 -9.92788 -9.34613 -9.23322 -8.81795 -8.51708 -7.37345 -6.07384 -4.09168 3.05107 3.31145 3.35392 3.38769 3.51162 3.79076 4.39451 4.58049 4.71484 4.83764 4.98112 5.05030 5.14081 5.28987 5.33112 5.47924 5.51937 5.60073 5.69491 5.91762 6.00145 6.08326 6.11357 6.16171 6.17483 6.37267 6.58690 7.01152 7.18035 7.35309 7.63382 7.73688 8.07570 8.33701 8.53790 8.56875 8.99961 9.56158 11.03459 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.007216 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.078723 B = 3879.308375 C = 4263.956365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.196 3.804 10 N -0.682 5.682 11 C 0.074 3.926 12 H 0.056 0.944 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.538 3.462 16 O -0.576 6.576 17 N -0.710 5.710 18 C 0.173 3.827 19 H 0.077 0.923 20 C -0.169 4.169 21 C -0.169 4.169 22 C -0.182 4.182 23 H 0.262 0.738 24 H -0.014 1.014 25 H 0.029 0.971 26 H 0.336 0.664 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.390 0.610 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -12.463 3.659 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.315 5.315 11 C -0.037 4.037 12 H 0.074 0.926 13 C -0.148 4.148 14 C -0.160 4.160 15 C 0.327 3.673 16 O -0.456 6.456 17 N -0.362 5.362 18 C 0.067 3.933 19 H 0.094 0.906 20 C -0.188 4.188 21 C -0.206 4.206 22 C -0.219 4.219 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.047 0.953 26 H 0.155 0.845 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.227 0.773 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.903 -12.370 2.534 12.956 hybrid contribution 0.222 0.902 1.271 1.574 sum 3.124 -11.467 3.805 12.480 Atomic orbital electron populations 1.69944 1.06033 1.26914 1.50782 1.24965 0.94854 0.99297 0.95304 0.86571 0.79455 0.82763 0.78678 1.21347 1.20327 1.20148 1.21121 0.93434 0.90240 1.50515 0.92133 1.19590 0.90497 0.87260 0.95739 1.60694 1.20830 1.00256 1.49696 1.21766 0.95339 0.90796 0.95776 0.92642 1.21701 0.97375 1.00690 0.95060 1.21453 0.93071 1.03355 0.98095 1.20223 0.88472 0.77146 0.81483 1.90699 1.35625 1.55252 1.64064 1.45534 1.19891 1.61399 1.09351 1.20643 0.87404 0.97893 0.87366 0.90569 1.22689 0.94447 1.04062 0.97597 1.23012 0.95561 0.99125 1.02942 1.22998 1.04614 0.94791 0.99519 0.92855 0.99660 0.95281 0.84470 0.92208 0.90320 0.86465 0.89738 0.77342 0.86518 0.88179 0.88367 0.88678 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.04 9.32 -34.44 -0.32 -14.36 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.20 4.77 5.24 -4.98 -0.03 4.74 16 10 N -0.68 -13.17 5.27 -107.85 -0.57 -13.74 16 11 C 0.07 1.15 2.41 -67.58 -0.16 0.99 16 12 H 0.06 0.88 7.81 -51.93 -0.41 0.47 16 13 C -0.11 -1.60 5.70 -26.36 -0.15 -1.75 16 14 C -0.12 -1.89 5.60 -27.94 -0.16 -2.05 16 15 C 0.54 9.00 7.62 -11.87 -0.09 8.91 16 16 O -0.58 -11.58 17.78 5.55 0.10 -11.48 16 17 N -0.71 -9.76 4.24 -54.85 -0.23 -9.99 16 18 C 0.17 2.18 3.21 -68.37 -0.22 1.96 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.17 -2.01 4.16 -90.62 -0.38 -2.39 16 21 C -0.17 -1.99 9.16 -26.73 -0.24 -2.24 16 22 C -0.18 -1.78 9.90 -26.73 -0.26 -2.05 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H -0.01 -0.37 8.06 -51.92 -0.42 -0.79 16 25 H 0.03 0.76 7.64 -51.93 -0.40 0.37 16 26 H 0.34 6.40 6.28 -39.29 -0.25 6.15 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 29 H 0.12 2.13 7.78 -51.93 -0.40 1.72 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.39 4.97 6.66 -40.82 -0.27 4.70 16 32 H 0.12 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.10 1.27 6.41 -51.93 -0.33 0.93 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -30.46 290.40 -8.09 -38.55 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.37 Total: 7.95 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.11 Total: -6.73 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.06 Total: -49.05 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.10 Total: -11.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.46 -8.09 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.335 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds