Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.60745 * 324.99899 * 11 10 9 13 13 C 1.53342 * 109.60487 * 85.32409 * 11 10 9 14 14 C 1.53376 * 108.27500 * 52.42715 * 13 11 10 15 15 C 1.50179 * 109.98923 * 48.74191 * 14 13 11 16 16 O 1.21284 * 118.24232 * 162.43398 * 15 14 13 17 17 N 1.33347 * 123.51042 * 342.45342 * 15 14 13 18 18 C 1.45759 * 124.10420 * 2.24566 * 17 15 14 19 19 H 1.09001 * 109.13264 * 101.11082 * 18 17 15 20 20 C 1.53009 * 109.29837 * 220.58976 * 18 17 15 21 21 C 1.53002 * 117.49725 * 9.66247 * 20 18 17 22 22 C 1.52995 * 117.49754 * 301.03694 * 20 18 17 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.00895 * 111.00143 * 56.04990 * 10 9 7 27 27 H 1.09001 * 109.67404 * 171.95588 * 13 11 10 28 28 H 1.09001 * 109.67569 * 292.49003 * 13 11 10 29 29 H 1.09000 * 109.32116 * 288.60298 * 14 13 11 30 30 H 1.08998 * 109.31115 * 168.87809 * 14 13 11 31 31 H 0.96999 * 117.95058 * 182.22616 * 17 15 14 32 32 H 1.08996 * 115.55009 * 155.36971 * 20 18 17 33 33 H 1.08998 * 117.50169 * 359.97438 * 21 20 18 34 34 H 1.08996 * 117.49486 * 145.02256 * 21 20 18 35 35 H 1.09003 * 117.49909 * 214.97682 * 22 20 18 36 36 H 1.09000 * 117.50381 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5913 -4.8277 0.5875 13 6 1.1570 -5.3028 -1.4411 14 6 2.4367 -5.2283 -2.2833 15 6 3.5533 -5.9503 -1.5853 16 8 4.5261 -6.2686 -2.2360 17 7 3.5324 -6.2604 -0.2886 18 6 2.4111 -5.9823 0.6003 19 1 1.8364 -6.8967 0.7472 20 6 2.9441 -5.4975 1.9501 21 6 4.4378 -5.1807 2.0474 22 6 3.8764 -6.4354 2.7195 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8405 -3.5488 0.7808 27 1 0.7673 -6.3206 -1.4579 28 1 0.4097 -4.6166 -1.8397 29 1 2.7142 -4.1839 -2.4260 30 1 2.2570 -5.6911 -3.2537 31 1 4.3121 -6.6988 0.0867 32 1 2.2594 -4.8801 2.5316 33 1 5.0409 -5.3180 1.1499 34 1 4.7360 -4.3546 2.6929 35 1 3.8054 -6.4346 3.8073 36 1 4.1105 -7.3975 2.2640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580770284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = -37.115584 kcal Electronic energy + Delta-G solvation = -17652.968876 eV Core-core repulsion = 14943.449643 eV Total energy + Delta-G solvation = -2709.519232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67201 -39.07612 -37.29565 -35.45790 -34.18775 -32.79647 -30.34046 -27.80766 -25.95825 -24.12350 -23.26076 -22.60905 -21.70324 -19.70051 -18.40324 -18.24021 -17.25702 -16.82490 -16.58589 -15.98074 -15.87109 -15.35282 -14.94668 -14.91244 -14.17323 -14.10984 -13.74160 -13.49682 -12.95492 -12.76307 -12.59721 -12.37469 -12.29883 -12.13444 -11.95629 -11.84157 -11.30056 -11.15646 -11.07336 -10.64727 -10.62884 -10.01462 -9.02733 -8.20952 -6.30124 1.40528 1.42809 1.50588 1.72423 2.35357 2.40316 2.86775 3.12925 3.53806 3.59275 3.62411 3.79760 4.00663 4.09801 4.21643 4.23358 4.44694 4.64499 4.76755 4.80812 4.81576 4.93909 5.04573 5.13689 5.17916 5.21159 5.26158 5.26885 5.38166 5.63947 5.87583 6.07234 6.38910 6.50946 6.77831 6.94479 7.28852 7.40449 8.89690 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.007216 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.078723 B = 3879.308375 C = 4263.956365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.214 3.786 10 N -0.680 5.680 11 C 0.068 3.932 12 H 0.057 0.943 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.536 3.464 16 O -0.614 6.614 17 N -0.696 5.696 18 C 0.180 3.820 19 H 0.111 0.889 20 C -0.182 4.182 21 C -0.184 4.184 22 C -0.151 4.151 23 H 0.264 0.736 24 H -0.037 1.037 25 H 0.005 0.995 26 H 0.338 0.662 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.399 0.601 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 -13.598 4.548 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.075 0.925 9 C 0.086 3.914 10 N -0.313 5.313 11 C -0.043 4.043 12 H 0.074 0.926 13 C -0.143 4.143 14 C -0.157 4.157 15 C 0.325 3.675 16 O -0.497 6.497 17 N -0.347 5.347 18 C 0.075 3.925 19 H 0.128 0.872 20 C -0.201 4.201 21 C -0.222 4.222 22 C -0.188 4.188 23 H 0.073 0.927 24 H -0.019 1.019 25 H 0.024 0.976 26 H 0.158 0.842 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.373 -13.525 3.459 14.362 hybrid contribution 0.058 1.218 1.021 1.591 sum 3.430 -12.306 4.480 13.538 Atomic orbital electron populations 1.70056 1.07470 1.27849 1.51618 1.25806 0.95691 1.02854 0.94867 0.85542 0.78252 0.78527 0.78914 1.20793 1.19333 1.19846 1.21488 0.93489 0.91785 1.50305 0.92505 1.19182 0.90427 0.88349 0.93417 1.60554 1.20057 1.00773 1.49873 1.21912 0.95835 0.89695 0.96860 0.92555 1.21699 0.96406 1.02282 0.93923 1.21390 0.93379 1.01652 0.99289 1.20315 0.88028 0.76959 0.82215 1.90682 1.36928 1.56984 1.65156 1.45434 1.20470 1.60252 1.08502 1.20703 0.86716 0.98077 0.86972 0.87183 1.22619 0.94335 1.05579 0.97553 1.22994 0.95296 1.00779 1.03116 1.23081 1.01127 0.94336 1.00212 0.92715 1.01930 0.97645 0.84240 0.88748 0.91818 0.89323 0.88147 0.76371 0.87396 0.89213 0.88758 0.87212 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.53 -29.51 9.32 25.60 0.24 -29.27 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.21 10.72 5.24 85.55 0.45 11.16 16 10 N -0.68 -26.47 5.27 -495.12 -2.61 -29.08 16 11 C 0.07 2.02 2.41 45.00 0.11 2.13 16 12 H 0.06 1.72 7.81 -2.39 -0.02 1.71 16 13 C -0.10 -2.93 5.70 30.83 0.18 -2.75 16 14 C -0.12 -3.64 5.60 29.81 0.17 -3.47 16 15 C 0.54 17.37 7.62 87.72 0.67 18.04 16 16 O -0.61 -24.39 17.78 -3.04 -0.05 -24.44 16 17 N -0.70 -17.73 4.24 -446.62 -1.89 -19.63 16 18 C 0.18 4.10 3.21 45.11 0.14 4.24 16 19 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.18 -3.95 4.16 -10.79 -0.04 -3.99 16 21 C -0.18 -4.05 9.16 30.60 0.28 -3.77 16 22 C -0.15 -2.45 9.90 30.60 0.30 -2.15 16 23 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 24 H -0.04 -1.98 8.06 -2.38 -0.02 -2.00 16 25 H 0.01 0.30 7.64 -2.39 -0.02 0.28 16 26 H 0.34 12.91 6.28 -89.70 -0.56 12.35 16 27 H 0.09 2.01 8.13 -2.39 -0.02 1.99 16 28 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 29 H 0.09 3.29 7.78 -2.39 -0.02 3.27 16 30 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.40 9.23 6.66 -92.71 -0.62 8.61 16 32 H 0.11 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.09 2.17 6.41 -2.39 -0.02 2.15 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.45 7.91 -2.39 -0.02 1.43 16 Total: -1.00 -66.14 290.40 0.61 -65.53 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.10 Total: 25.06 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 2.95 Total: -9.01 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.22 Total: -103.16 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.14 0.61 -65.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.415 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds