Wall clock time and date at job start Sun Mar 29 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 H 1.09002 * 109.46937 * 54.38690 * 3 2 1 5 5 N 1.46894 * 109.47377 * 174.38936 * 3 2 1 6 6 C 1.46903 * 111.00116 * 274.28175 * 5 3 2 7 7 C 1.50699 * 109.46856 * 175.03176 * 6 5 3 8 8 H 1.07998 * 120.00575 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99656 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99739 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99730 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47217 * 89.99806 * 11 9 7 13 13 H 1.48510 * 109.46642 * 209.99350 * 11 9 7 14 14 H 1.48496 * 109.47391 * 329.99065 * 11 9 7 15 15 C 1.50707 * 109.47293 * 294.39247 * 3 2 1 16 16 C 1.41379 * 128.00496 * 285.00273 * 15 3 2 17 17 C 1.50701 * 126.80074 * 0.02801 * 16 15 3 18 18 N 1.30175 * 106.39719 * 179.97438 * 16 15 3 19 19 O 1.20923 * 111.60061 * 359.71862 * 18 16 15 20 20 C 1.34037 * 111.56948 * 0.45559 * 19 18 16 21 21 C 1.50696 * 126.77873 * 179.82669 * 20 19 18 22 22 H 1.09005 * 109.47233 * 65.55336 * 1 2 3 23 23 H 1.08993 * 109.47759 * 185.55802 * 1 2 3 24 24 H 1.09003 * 109.46989 * 305.56401 * 1 2 3 25 25 H 1.09002 * 109.46672 * 240.00330 * 2 1 3 26 26 H 1.09000 * 109.47277 * 120.00371 * 2 1 3 27 27 H 1.00900 * 111.00195 * 150.32765 * 5 3 2 28 28 H 1.08999 * 109.46823 * 295.02914 * 6 5 3 29 29 H 1.08997 * 109.46675 * 55.03097 * 6 5 3 30 30 H 0.97008 * 119.99833 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.47254 * 90.00903 * 17 16 15 32 32 H 1.08998 * 109.47094 * 210.00380 * 17 16 15 33 33 H 1.08994 * 109.47192 * 330.00462 * 17 16 15 34 34 H 1.08997 * 109.47524 * 269.68370 * 21 20 19 35 35 H 1.08999 * 109.47384 * 29.68348 * 21 20 19 36 36 H 1.09002 * 109.47434 * 149.68482 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5970 1.9845 0.8355 5 7 3.5027 1.4446 0.1354 6 6 3.9008 1.3877 1.5483 7 6 5.4000 1.2686 1.6434 8 1 5.9975 1.2378 0.7442 9 6 6.0090 1.1978 2.8784 10 7 5.2814 1.2347 3.9733 11 14 7.8675 1.0509 2.9963 12 1 8.4686 2.4076 3.0539 13 1 8.2275 0.2975 4.2244 14 1 8.3837 0.3308 1.8046 15 6 1.6543 2.1117 -1.2940 16 6 2.2274 1.9285 -2.5734 17 6 3.3671 1.0088 -2.9288 18 7 1.5748 2.7108 -3.3838 19 8 0.7071 3.3249 -2.8074 20 6 0.6780 3.0275 -1.5008 21 6 -0.2602 3.5951 -0.4670 22 1 -0.3634 0.4253 -0.9356 23 1 -0.3634 -1.0227 0.0995 24 1 -0.3633 0.5977 0.8360 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9071 2.2480 -0.3220 28 1 3.5757 2.2967 2.0543 29 1 3.4368 0.5225 2.0218 30 1 5.7099 1.1853 4.8423 31 1 2.9723 0.0315 -3.2064 32 1 3.9236 1.4272 -3.7674 33 1 4.0296 0.9025 -2.0699 34 1 0.1824 4.4882 -0.0260 35 1 -1.2076 3.8545 -0.9394 36 1 -0.4340 2.8530 0.3124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581066591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:32 Heat of formation + Delta-G solvation = 23.202514 kcal Electronic energy + Delta-G solvation = -17371.913206 eV Core-core repulsion = 14665.009563 eV Total energy + Delta-G solvation = -2706.903643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.89426 -38.77169 -35.61207 -34.87476 -33.96458 -33.05039 -29.58916 -29.45753 -28.26234 -26.10014 -24.02036 -23.41104 -21.20590 -21.01864 -18.68144 -18.64297 -17.68473 -16.77133 -16.21895 -15.95731 -15.37297 -14.98364 -14.62661 -14.24426 -14.15304 -13.98488 -13.80993 -13.62947 -13.42751 -13.17629 -13.13236 -12.71597 -12.59071 -12.40637 -12.25437 -11.94305 -11.90421 -11.52291 -11.31269 -10.72744 -10.62906 -10.05391 -9.12539 -8.20176 -6.29897 0.50919 1.24021 1.42621 1.43371 1.55028 2.20917 2.41489 3.13628 3.18778 3.48498 3.62898 3.95356 4.08827 4.28048 4.32609 4.45478 4.62197 4.64476 4.66589 4.72329 4.79453 4.82263 4.95728 4.96893 5.13725 5.16724 5.18978 5.27700 5.31372 5.39155 5.47567 5.66543 6.06681 6.46717 6.69750 6.89409 7.33856 7.40552 8.90963 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028959 B = 0.006217 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.635806 B = 4502.767251 C = 4803.315732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.170 3.830 4 H 0.043 0.957 5 N -0.674 5.674 6 C 0.213 3.787 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.265 1.265 15 C -0.207 4.207 16 C 0.034 3.966 17 C -0.080 4.080 18 N -0.398 5.398 19 O 0.087 5.913 20 C -0.022 4.022 21 C -0.075 4.075 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.330 0.670 28 H -0.039 1.039 29 H 0.008 0.992 30 H 0.264 0.736 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 1.733 -9.026 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.059 3.941 4 H 0.061 0.939 5 N -0.304 5.304 6 C 0.085 3.915 7 C -0.570 4.570 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.190 1.190 15 C -0.212 4.212 16 C -0.125 4.125 17 C -0.137 4.137 18 N -0.107 5.107 19 O 0.025 5.975 20 C -0.086 4.086 21 C -0.132 4.132 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.148 0.852 28 H -0.022 1.022 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.617 1.311 -10.236 14.806 hybrid contribution 0.925 0.525 1.387 1.748 sum -9.692 1.836 -8.849 13.252 Atomic orbital electron populations 1.21714 0.94031 1.02392 1.01680 1.21441 0.96384 0.94784 1.01648 1.19738 0.88917 0.95401 0.90015 0.93886 1.60652 1.06856 1.46845 1.16058 1.19230 0.95006 0.93415 0.83842 1.21529 0.92930 1.49886 0.92610 0.91874 1.25864 1.03428 0.94849 0.95298 1.70074 1.37422 1.51622 0.98164 0.85412 0.79338 0.78296 0.77735 1.19981 1.20805 1.18969 1.21069 1.00462 1.02985 0.96648 1.23708 1.00072 0.98743 0.89939 1.20333 0.93408 0.96415 1.03574 1.73786 1.03792 1.11004 1.22103 1.84731 1.42087 1.51620 1.19051 1.24795 1.00060 0.97772 0.86022 1.20574 0.97049 1.02228 0.93389 0.92912 0.91573 0.92078 0.92009 0.93204 0.85250 1.02162 0.97364 0.92696 0.89643 0.90556 0.88739 0.88555 0.87349 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.64 71.98 0.69 -2.69 16 2 C -0.10 -3.28 5.64 30.59 0.17 -3.11 16 3 C 0.17 5.76 2.40 44.17 0.11 5.87 16 4 H 0.04 1.51 7.17 -2.39 -0.02 1.49 16 5 N -0.67 -27.80 4.62 -499.46 -2.31 -30.10 16 6 C 0.21 10.94 5.21 85.56 0.45 11.39 16 7 C -0.53 -29.62 9.36 25.60 0.24 -29.38 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.41 16 9 C 0.00 0.22 5.46 84.66 0.46 0.68 16 10 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 11 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C -0.21 -6.34 4.02 -19.73 -0.08 -6.42 16 16 C 0.03 1.07 7.22 43.58 0.31 1.39 16 17 C -0.08 -2.28 10.34 71.24 0.74 -1.54 16 18 N -0.40 -12.82 12.07 -49.56 -0.60 -13.41 16 19 O 0.09 2.53 11.20 71.66 0.80 3.33 16 20 C -0.02 -0.58 7.38 25.04 0.18 -0.40 16 21 C -0.08 -1.31 10.12 71.23 0.72 -0.59 16 22 H 0.05 1.22 7.49 -2.38 -0.02 1.20 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.36 7.83 -2.39 -0.02 1.34 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.79 7.34 -2.39 -0.02 1.77 16 27 H 0.33 13.57 8.06 -89.69 -0.72 12.85 16 28 H -0.04 -2.19 8.14 -2.39 -0.02 -2.20 16 29 H 0.01 0.46 7.32 -2.39 -0.02 0.44 16 30 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 3.01 6.24 -2.39 -0.01 2.99 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.62 7.37 -2.39 -0.02 1.61 16 Total: -1.00 -63.57 300.75 4.55 -59.02 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.35 Total: 15.10 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.00 Total: -24.80 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -2.62 Total: -98.48 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.80 Total: 3.33 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -63.57 4.55 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581066591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.224 kcal (2) G-P(sol) polarization free energy of solvation -63.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds