Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 C 1.50699 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.30260 * 125.61801 * 90.02734 * 4 3 2 6 6 C 1.34485 * 108.69814 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.16042 * 179.97438 * 6 5 4 8 8 C 1.34330 * 107.66950 * 359.97438 * 6 5 4 9 9 C 1.50703 * 126.44066 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.46913 * 90.00309 * 9 8 6 11 11 C 1.46902 * 110.99469 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46800 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00093 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47023 * 89.99707 * 16 14 12 18 18 H 1.48500 * 109.46866 * 209.99780 * 16 14 12 19 19 H 1.48496 * 109.47176 * 329.99675 * 16 14 12 20 20 O 1.33967 * 125.62312 * 269.98910 * 4 3 2 21 21 H 1.09004 * 109.46394 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46879 * 299.99612 * 1 2 3 23 23 H 1.09001 * 109.47219 * 59.99975 * 1 2 3 24 24 H 1.09004 * 109.47389 * 240.00581 * 2 1 3 25 25 H 1.08994 * 109.47503 * 120.00288 * 2 1 3 26 26 H 1.09003 * 109.46873 * 60.00662 * 3 2 1 27 27 H 1.09001 * 109.47259 * 300.00000 * 3 2 1 28 28 H 1.09003 * 109.47326 * 89.98074 * 7 6 5 29 29 H 1.08997 * 109.47260 * 209.97193 * 7 6 5 30 30 H 1.08997 * 109.47671 * 329.97682 * 7 6 5 31 31 H 1.08997 * 109.46564 * 210.00722 * 9 8 6 32 32 H 1.09004 * 109.46906 * 329.99745 * 9 8 6 33 33 H 1.00903 * 110.99506 * 303.94882 * 10 9 8 34 34 H 1.08997 * 109.47026 * 299.99601 * 11 10 9 35 35 H 1.08998 * 109.47655 * 59.99935 * 11 10 9 36 36 H 0.96996 * 120.00329 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4430 -1.0580 6 6 5.5925 1.4435 -0.6660 7 6 6.7976 1.4435 -1.5707 8 6 5.6095 1.4440 0.6772 9 6 6.8331 1.4441 1.5569 10 7 7.2308 2.8291 1.8423 11 6 8.4235 2.8683 2.6990 12 6 8.8010 4.3021 2.9691 13 1 8.2134 5.1039 2.5469 14 6 9.8959 4.5902 3.7560 15 7 10.2251 5.8413 3.9921 16 14 10.9117 3.2033 4.4868 17 1 11.9981 2.8353 3.5436 18 1 11.5034 3.6484 5.7741 19 1 10.0412 2.0238 4.7238 20 8 4.3268 1.4430 1.0899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 7.0877 2.4712 -1.7895 29 1 7.6228 0.9305 -1.0768 30 1 6.5542 0.9289 -2.5003 31 1 6.6084 0.9305 2.4917 32 1 7.6475 0.9298 1.0466 33 1 7.3822 3.3450 0.9884 34 1 8.2103 2.3646 3.6418 35 1 9.2488 2.3642 2.1963 36 1 10.9955 6.0441 4.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581484263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = 2.144209 kcal Electronic energy + Delta-G solvation = -16414.441962 eV Core-core repulsion = 13706.625162 eV Total energy + Delta-G solvation = -2707.816800 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.16857 -36.08732 -35.37867 -34.85299 -32.68090 -31.40490 -28.70708 -28.44561 -26.14703 -23.62875 -22.17567 -21.34658 -21.18277 -20.32965 -17.07063 -16.52077 -16.36753 -15.40968 -15.32667 -14.58691 -14.24106 -13.84178 -13.69025 -13.46924 -13.15083 -13.03034 -12.50097 -12.47445 -12.15252 -11.89732 -11.82600 -11.63711 -11.59597 -11.00709 -10.81899 -10.71087 -10.63329 -10.27980 -9.89567 -9.37567 -8.65984 -8.40715 -7.66583 -6.10650 -4.09768 1.60207 2.74366 2.82491 3.24552 3.32639 3.34127 4.00282 4.36993 4.67607 4.71718 4.83238 4.93491 5.03360 5.16966 5.22137 5.27554 5.37754 5.39889 5.49366 5.62299 5.66928 5.74057 5.78931 5.86609 5.91763 5.98630 6.12470 6.29770 6.50169 6.63496 6.88277 7.47929 7.74000 7.89720 8.15027 8.56274 8.96977 9.49842 11.02532 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039596 B = 0.004363 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.973502 B = 6416.536358 C = 6650.454129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.020 4.020 4 C 0.181 3.819 5 N -0.480 5.480 6 C -0.020 4.020 7 C -0.070 4.070 8 C -0.022 4.022 9 C 0.136 3.864 10 N -0.674 5.674 11 C 0.165 3.835 12 C -0.519 4.519 13 H 0.080 0.920 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.267 1.267 20 O -0.191 6.191 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.340 0.660 34 H 0.030 0.970 35 H -0.016 1.016 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -12.720 -8.810 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.058 4.058 4 C -0.027 4.027 5 N -0.210 5.210 6 C -0.141 4.141 7 C -0.127 4.127 8 C -0.076 4.076 9 C 0.007 3.993 10 N -0.306 5.306 11 C 0.038 3.962 12 C -0.557 4.557 13 H 0.098 0.902 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.191 1.191 20 O -0.077 6.077 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.048 0.952 35 H 0.002 0.998 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.475 -12.529 -8.730 21.041 hybrid contribution 1.589 -0.805 0.545 1.863 sum -12.886 -13.334 -8.185 20.269 Atomic orbital electron populations 1.21755 0.94764 1.02104 1.02198 1.21535 0.96317 0.95036 1.03073 1.20102 0.81468 0.99160 1.05067 1.26068 0.96008 1.01606 0.78974 1.70274 1.01590 1.18720 1.30414 1.21470 0.93321 1.07092 0.92209 1.20103 0.91828 1.03086 0.97710 1.23313 0.83669 1.06000 0.94587 1.20341 0.88112 0.93858 0.97026 1.60560 1.40027 1.08601 1.21440 1.20059 0.85332 0.98629 0.92222 1.21007 1.12192 0.90786 1.31711 0.90231 1.24899 0.97038 0.95467 0.95845 1.69892 1.27455 1.17606 1.38704 0.86812 0.80711 0.82877 0.79029 1.20238 1.21051 1.19127 1.84400 1.16626 1.69372 1.37310 0.92316 0.92336 0.92341 0.91180 0.91475 0.88944 0.87877 0.90532 0.90888 0.90927 0.89715 0.92423 0.84244 0.95220 0.99834 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 3 C -0.02 -0.20 5.84 -27.88 -0.16 -0.36 16 4 C 0.18 2.67 7.60 -12.94 -0.10 2.57 16 5 N -0.48 -7.77 11.30 -7.36 -0.08 -7.85 16 6 C -0.02 -0.33 7.11 -82.81 -0.59 -0.92 16 7 C -0.07 -0.90 10.22 36.00 0.37 -0.53 16 8 C -0.02 -0.37 6.90 -35.69 -0.25 -0.62 16 9 C 0.14 2.33 6.02 -4.98 -0.03 2.30 16 10 N -0.67 -14.14 6.48 -116.33 -0.75 -14.89 16 11 C 0.16 3.94 4.51 -4.97 -0.02 3.91 16 12 C -0.52 -14.79 9.87 -34.44 -0.34 -15.13 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 16 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 20 O -0.19 -3.25 10.77 5.38 0.06 -3.19 16 21 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.88 7.17 -51.93 -0.37 0.51 16 33 H 0.34 6.95 8.71 -39.29 -0.34 6.61 16 34 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 35 H -0.02 -0.37 7.57 -51.93 -0.39 -0.76 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -32.30 305.69 -6.75 -39.04 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.67 Total: 1.08 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.01 Total: -8.66 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.06 Total: -49.45 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.06 Total: -3.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.30 -6.75 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581484263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.188 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds