Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 C 1.50699 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.30260 * 125.61801 * 90.02734 * 4 3 2 6 6 C 1.34485 * 108.69814 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.16042 * 179.97438 * 6 5 4 8 8 C 1.34330 * 107.66950 * 359.97438 * 6 5 4 9 9 C 1.50703 * 126.44066 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.46913 * 90.00309 * 9 8 6 11 11 C 1.46902 * 110.99469 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46800 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00093 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47023 * 89.99707 * 16 14 12 18 18 H 1.48500 * 109.46866 * 209.99780 * 16 14 12 19 19 H 1.48496 * 109.47176 * 329.99675 * 16 14 12 20 20 O 1.33967 * 125.62312 * 269.98910 * 4 3 2 21 21 H 1.09004 * 109.46394 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46879 * 299.99612 * 1 2 3 23 23 H 1.09001 * 109.47219 * 59.99975 * 1 2 3 24 24 H 1.09004 * 109.47389 * 240.00581 * 2 1 3 25 25 H 1.08994 * 109.47503 * 120.00288 * 2 1 3 26 26 H 1.09003 * 109.46873 * 60.00662 * 3 2 1 27 27 H 1.09001 * 109.47259 * 300.00000 * 3 2 1 28 28 H 1.09003 * 109.47326 * 89.98074 * 7 6 5 29 29 H 1.08997 * 109.47260 * 209.97193 * 7 6 5 30 30 H 1.08997 * 109.47671 * 329.97682 * 7 6 5 31 31 H 1.08997 * 109.46564 * 210.00722 * 9 8 6 32 32 H 1.09004 * 109.46906 * 329.99745 * 9 8 6 33 33 H 1.00903 * 110.99506 * 303.94882 * 10 9 8 34 34 H 1.08997 * 109.47026 * 299.99601 * 11 10 9 35 35 H 1.08998 * 109.47655 * 59.99935 * 11 10 9 36 36 H 0.96996 * 120.00329 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4430 -1.0580 6 6 5.5925 1.4435 -0.6660 7 6 6.7976 1.4435 -1.5707 8 6 5.6095 1.4440 0.6772 9 6 6.8331 1.4441 1.5569 10 7 7.2308 2.8291 1.8423 11 6 8.4235 2.8683 2.6990 12 6 8.8010 4.3021 2.9691 13 1 8.2134 5.1039 2.5469 14 6 9.8959 4.5902 3.7560 15 7 10.2251 5.8413 3.9921 16 14 10.9117 3.2033 4.4868 17 1 11.9981 2.8353 3.5436 18 1 11.5034 3.6484 5.7741 19 1 10.0412 2.0238 4.7238 20 8 4.3268 1.4430 1.0899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 7.0877 2.4712 -1.7895 29 1 7.6228 0.9305 -1.0768 30 1 6.5542 0.9289 -2.5003 31 1 6.6084 0.9305 2.4917 32 1 7.6475 0.9298 1.0466 33 1 7.3822 3.3450 0.9884 34 1 8.2103 2.3646 3.6418 35 1 9.2488 2.3642 2.1963 36 1 10.9955 6.0441 4.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581484263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = -22.315788 kcal Electronic energy + Delta-G solvation = -16415.502627 eV Core-core repulsion = 13706.625162 eV Total energy + Delta-G solvation = -2708.877465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.37427 -37.58505 -36.33082 -36.03458 -34.67470 -32.72219 -30.27611 -29.31460 -27.68951 -24.91811 -23.16959 -23.12502 -22.30349 -21.47473 -19.08717 -17.77349 -17.72700 -16.76505 -16.35209 -16.04838 -15.49508 -15.40465 -15.20515 -14.49886 -14.32877 -14.16077 -14.05514 -13.66755 -13.26022 -13.18136 -12.96382 -12.64898 -12.62686 -12.47703 -12.26901 -11.84200 -11.81642 -11.64509 -11.56837 -11.51310 -10.83062 -9.65095 -9.27073 -8.31046 -6.37091 0.38135 1.36306 1.39116 1.49994 1.56392 1.68311 2.34204 2.97093 3.03042 3.45745 3.76894 3.82556 4.00926 4.02608 4.11760 4.26185 4.42756 4.57717 4.67154 4.69654 4.71528 4.75156 4.82492 4.91569 5.00499 5.00619 5.09819 5.19571 5.24494 5.41184 5.42748 5.47870 5.83885 6.43185 6.52251 6.69997 6.71660 7.27641 8.85889 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039596 B = 0.004363 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.973502 B = 6416.536358 C = 6650.454129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.022 4.022 4 C 0.187 3.813 5 N -0.504 5.504 6 C -0.020 4.020 7 C -0.071 4.071 8 C -0.051 4.051 9 C 0.143 3.857 10 N -0.690 5.690 11 C 0.176 3.824 12 C -0.533 4.533 13 H 0.033 0.967 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.246 1.246 20 O -0.209 6.209 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.339 0.661 34 H 0.031 0.969 35 H 0.001 0.999 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -14.937 -9.074 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.020 4.020 5 N -0.234 5.234 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.104 4.104 9 C 0.014 3.986 10 N -0.322 5.322 11 C 0.048 3.952 12 C -0.571 4.571 13 H 0.051 0.949 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.778 3.222 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.169 1.169 20 O -0.096 6.096 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.791 -14.761 -9.018 22.760 hybrid contribution 1.542 -0.040 0.547 1.636 sum -13.250 -14.801 -8.471 21.596 Atomic orbital electron populations 1.21732 0.92855 1.02859 1.02931 1.21488 0.97829 0.93668 1.02382 1.20431 0.78525 1.00571 1.06415 1.27103 0.97524 0.99142 0.78217 1.70333 1.01920 1.20160 1.30995 1.21972 0.94171 1.05429 0.92411 1.20225 0.91087 1.03551 0.97898 1.23279 0.83706 1.08450 0.94941 1.20317 0.88995 0.91592 0.97721 1.60406 1.38756 1.11471 1.21517 1.19803 0.86913 0.95418 0.93066 1.21294 1.11894 0.92310 1.31586 0.94894 1.25928 0.98448 0.98449 0.96212 1.70056 1.28473 1.20404 1.39910 0.85602 0.79051 0.79473 0.78110 1.18703 1.20860 1.16927 1.84389 1.17020 1.69887 1.38343 0.91582 0.91694 0.91536 0.91916 0.92160 0.87583 0.86454 0.90390 0.89470 0.89664 0.89446 0.89915 0.84299 0.95073 0.98159 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.79 5.92 30.60 0.18 -1.61 16 3 C -0.02 -0.40 5.84 29.85 0.17 -0.22 16 4 C 0.19 5.37 7.60 88.34 0.67 6.05 16 5 N -0.50 -15.85 11.30 -291.98 -3.30 -19.14 16 6 C -0.02 -0.61 7.11 41.26 0.29 -0.32 16 7 C -0.07 -1.70 10.22 71.23 0.73 -0.97 16 8 C -0.05 -1.68 6.90 24.79 0.17 -1.51 16 9 C 0.14 4.67 6.02 85.56 0.51 5.19 16 10 N -0.69 -28.56 6.48 -521.97 -3.38 -31.94 16 11 C 0.18 8.20 4.51 85.56 0.39 8.59 16 12 C -0.53 -30.90 9.87 25.60 0.25 -30.65 16 13 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 14 C 0.01 0.42 5.47 84.65 0.46 0.88 16 15 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 16 Si 0.96 43.03 27.47 68.60 1.88 44.91 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.25 -10.18 6.54 99.48 0.65 -9.53 16 20 O -0.21 -7.01 10.77 -3.68 -0.04 -7.05 16 21 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 1.83 7.16 -2.39 -0.02 1.81 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.08 2.29 7.17 -2.38 -0.02 2.28 16 33 H 0.34 13.93 8.71 -89.69 -0.78 13.15 16 34 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 35 H 0.00 0.03 7.57 -2.39 -0.02 0.02 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -70.44 305.69 0.24 -70.20 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.23 Total: 17.47 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.55 Total: -15.42 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -6.38 Total: -110.11 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.04 Total: -7.05 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -70.44 0.24 -70.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581484263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.886 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds