Wall clock time and date at job start Sun Mar 29 2020 21:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 14 14 H 1.09002 * 109.50003 * 301.41194 * 13 12 11 15 15 N 1.46501 * 109.49816 * 181.31319 * 13 12 11 16 16 C 1.34776 * 119.99832 * 155.15979 * 15 13 12 17 17 O 1.21281 * 120.00314 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99728 * 180.02562 * 16 15 13 19 19 C 1.53003 * 117.49884 * 248.61938 * 18 16 15 20 20 C 1.53003 * 60.00152 * 252.51497 * 19 18 16 21 21 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 22 22 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 23 23 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 24 24 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 25 25 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 26 26 H 1.08999 * 109.45583 * 174.73857 * 11 10 9 27 27 H 1.08994 * 109.46262 * 178.48775 * 12 11 10 28 28 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 29 29 H 0.96997 * 120.00007 * 335.16990 * 15 13 12 30 30 H 1.09000 * 115.55371 * 34.32931 * 18 16 15 31 31 H 1.09008 * 117.49375 * 0.02562 * 19 18 16 32 32 H 1.08996 * 117.49962 * 145.01793 * 19 18 16 33 33 H 1.08997 * 117.49424 * 252.51188 * 20 19 18 34 34 H 1.08990 * 117.52151 * 107.48244 * 20 19 18 35 35 H 1.09000 * 109.58078 * 353.36597 * 21 9 7 36 36 H 1.08997 * 109.58583 * 113.65443 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 6 2.1821 -4.5601 -1.1359 14 1 3.0880 -4.1723 -1.6019 15 7 2.4267 -5.9190 -0.6461 16 6 3.6356 -6.2491 -0.1500 17 8 4.5208 -5.4211 -0.1085 18 6 3.8873 -7.6471 0.3533 19 6 4.0910 -7.8300 1.8587 20 6 5.2801 -7.9594 0.9045 21 6 1.7838 -3.6581 0.0365 22 1 -0.4850 -0.8357 0.0846 23 1 -0.5659 -2.5744 -1.1452 24 1 0.3218 -1.2239 -1.8971 25 1 1.7332 -2.7951 -3.1517 26 1 0.0234 -3.1916 -3.4500 27 1 1.3194 -5.2446 -2.9876 28 1 0.1369 -4.9483 -1.6909 29 1 1.7187 -6.5811 -0.6790 30 1 3.3694 -8.4409 -0.1849 31 1 4.0426 -6.9391 2.4850 32 1 3.7069 -8.7442 2.3111 33 1 5.6782 -8.9588 0.7292 34 1 6.0143 -7.1539 0.9026 35 1 2.6246 -3.5585 0.7230 36 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586066845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:46 Heat of formation + Delta-G solvation = -0.868920 kcal Electronic energy + Delta-G solvation = -17334.066605 eV Core-core repulsion = 14626.119146 eV Total energy + Delta-G solvation = -2707.947459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88217 -37.76796 -36.02188 -34.42282 -32.49072 -30.39401 -28.84834 -25.09155 -24.51671 -22.55293 -22.24274 -21.51936 -19.98167 -19.21107 -17.39124 -17.29736 -15.83144 -15.12686 -14.66224 -14.40541 -14.05575 -13.92934 -13.53956 -13.24852 -12.74769 -12.55388 -12.30430 -12.00425 -11.66483 -11.19377 -10.76418 -10.72999 -10.69644 -10.54702 -10.35523 -10.09042 -10.02904 -9.96228 -9.55652 -9.29395 -8.87137 -8.28273 -6.85260 -6.03477 -3.21682 2.66171 3.29890 3.54249 3.56827 3.75054 3.82420 4.61109 4.66454 4.75960 4.79269 5.07139 5.21475 5.33419 5.39675 5.46670 5.57465 5.61898 5.64709 5.84900 5.96111 6.02930 6.06137 6.14168 6.38919 6.44193 6.57047 6.62679 6.73029 6.91412 7.07180 7.18557 7.75159 8.07667 8.47011 8.61580 9.14197 9.87711 10.30620 11.24500 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.006266 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.513346 B = 4467.586983 C = 5027.753585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.348 4.348 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.148 3.852 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.086 0.914 15 N -0.719 5.719 16 C 0.537 3.463 17 O -0.537 6.537 18 C -0.194 4.194 19 C -0.154 4.154 20 C -0.150 4.150 21 C 0.145 3.855 22 H 0.268 0.732 23 H 0.018 0.982 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.395 0.605 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -16.053 -1.660 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.477 4.477 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.369 5.369 16 C 0.323 3.677 17 O -0.414 6.414 18 C -0.215 4.215 19 C -0.191 4.191 20 C -0.187 4.187 21 C 0.017 3.983 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.733 -13.739 -1.691 14.337 hybrid contribution -0.265 -2.178 0.037 2.194 sum 3.468 -15.916 -1.654 16.373 Atomic orbital electron populations 1.70789 1.06558 1.30214 1.48158 1.25878 0.96529 1.01454 0.98626 0.83524 0.74761 0.75921 0.76314 1.21085 1.21989 1.21949 1.20008 0.97204 0.88128 1.42344 0.92614 1.44069 1.46670 1.01196 1.39934 1.21091 0.90462 0.99013 0.87242 1.22136 1.01146 0.94812 0.99323 1.21670 0.97702 0.98368 0.97543 1.21708 0.99016 0.80774 0.96453 0.89608 1.46050 1.13169 1.13957 1.63772 1.19625 0.82384 0.88332 0.77372 1.90725 1.44108 1.51270 1.55281 1.22222 1.03852 0.96393 0.99022 1.22931 1.02159 1.03804 0.90235 1.22929 0.90702 1.03283 1.01803 1.21178 0.97631 0.86396 0.93075 0.92150 0.96396 0.90134 0.92043 0.92518 0.92825 0.92244 0.77171 0.86164 0.88126 0.87961 0.88154 0.87397 0.92346 0.96727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.79 12.45 55.49 0.69 -27.10 16 2 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 3 Si 1.07 25.94 29.98 -169.99 -5.10 20.85 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.35 -10.11 9.48 -15.06 -0.14 -10.26 16 8 H 0.06 1.67 7.94 -52.49 -0.42 1.25 16 9 N -0.59 -15.41 2.83 -172.05 -0.49 -15.89 16 10 C 0.15 3.47 4.72 -3.48 -0.02 3.45 16 11 C -0.13 -2.50 6.10 -26.38 -0.16 -2.66 16 12 C -0.11 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C 0.13 2.33 2.60 -67.81 -0.18 2.15 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.72 -10.67 5.08 -53.69 -0.27 -10.94 16 16 C 0.54 8.53 7.58 -10.98 -0.08 8.44 16 17 O -0.54 -11.07 15.92 5.56 0.09 -10.98 16 18 C -0.19 -2.18 6.19 -91.76 -0.57 -2.74 16 19 C -0.15 -1.55 10.23 -26.73 -0.27 -1.82 16 20 C -0.15 -1.57 10.04 -26.73 -0.27 -1.83 16 21 C 0.14 3.25 6.09 -3.71 -0.02 3.23 16 22 H 0.27 8.15 6.71 -40.82 -0.27 7.88 16 23 H 0.02 0.42 7.85 -51.93 -0.41 0.02 16 24 H 0.08 2.12 6.38 -51.93 -0.33 1.78 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.35 7.67 -51.93 -0.40 0.95 16 35 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -33.29 294.62 -8.16 -41.45 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.59 Total: 2.96 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.94 Total: -4.79 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.07 Total: -53.93 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.10 Total: 20.85 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.29 -8.16 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586066845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.582 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds