Wall clock time and date at job start Sun Mar 29 2020 21:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 14 14 H 1.09002 * 109.50003 * 301.41194 * 13 12 11 15 15 N 1.46501 * 109.49816 * 181.31319 * 13 12 11 16 16 C 1.34776 * 119.99832 * 155.15979 * 15 13 12 17 17 O 1.21281 * 120.00314 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99728 * 180.02562 * 16 15 13 19 19 C 1.53003 * 117.49884 * 248.61938 * 18 16 15 20 20 C 1.53003 * 60.00152 * 252.51497 * 19 18 16 21 21 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 22 22 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 23 23 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 24 24 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 25 25 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 26 26 H 1.08999 * 109.45583 * 174.73857 * 11 10 9 27 27 H 1.08994 * 109.46262 * 178.48775 * 12 11 10 28 28 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 29 29 H 0.96997 * 120.00007 * 335.16990 * 15 13 12 30 30 H 1.09000 * 115.55371 * 34.32931 * 18 16 15 31 31 H 1.09008 * 117.49375 * 0.02562 * 19 18 16 32 32 H 1.08996 * 117.49962 * 145.01793 * 19 18 16 33 33 H 1.08997 * 117.49424 * 252.51188 * 20 19 18 34 34 H 1.08990 * 117.52151 * 107.48244 * 20 19 18 35 35 H 1.09000 * 109.58078 * 353.36597 * 21 9 7 36 36 H 1.08997 * 109.58583 * 113.65443 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 6 2.1821 -4.5601 -1.1359 14 1 3.0880 -4.1723 -1.6019 15 7 2.4267 -5.9190 -0.6461 16 6 3.6356 -6.2491 -0.1500 17 8 4.5208 -5.4211 -0.1085 18 6 3.8873 -7.6471 0.3533 19 6 4.0910 -7.8300 1.8587 20 6 5.2801 -7.9594 0.9045 21 6 1.7838 -3.6581 0.0365 22 1 -0.4850 -0.8357 0.0846 23 1 -0.5659 -2.5744 -1.1452 24 1 0.3218 -1.2239 -1.8971 25 1 1.7332 -2.7951 -3.1517 26 1 0.0234 -3.1916 -3.4500 27 1 1.3194 -5.2446 -2.9876 28 1 0.1369 -4.9483 -1.6909 29 1 1.7187 -6.5811 -0.6790 30 1 3.3694 -8.4409 -0.1849 31 1 4.0426 -6.9391 2.4850 32 1 3.7069 -8.7442 2.3111 33 1 5.6782 -8.9588 0.7292 34 1 6.0143 -7.1539 0.9026 35 1 2.6246 -3.5585 0.7230 36 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586066845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:45 Heat of formation + Delta-G solvation = -23.858315 kcal Electronic energy + Delta-G solvation = -17335.063500 eV Core-core repulsion = 14626.119146 eV Total energy + Delta-G solvation = -2708.944354 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18915 -39.35928 -37.12337 -36.10365 -34.22451 -32.31884 -30.50874 -27.13199 -25.75552 -24.02879 -23.35453 -23.08927 -21.40752 -20.71613 -19.45127 -18.44137 -17.25465 -16.35241 -16.25313 -16.07182 -15.64695 -15.48942 -15.32791 -14.80932 -14.40136 -14.13121 -13.67618 -13.55919 -13.03632 -12.64036 -12.52052 -12.43638 -11.97141 -11.90207 -11.86370 -11.75171 -11.54463 -11.43766 -11.27481 -10.90393 -10.63699 -10.16487 -8.97914 -8.30773 -5.49027 1.46738 1.54348 1.61356 1.81687 2.07901 2.61433 2.92255 3.15394 3.49549 3.69310 3.79862 3.87426 3.96544 3.99447 4.09860 4.22481 4.30704 4.39580 4.64921 4.70353 4.72754 4.87005 4.87790 4.98084 5.03243 5.04226 5.11977 5.21426 5.22126 5.36893 5.50746 5.77542 6.34293 6.56645 6.99824 7.27143 7.70957 8.12554 8.92615 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.006266 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.513346 B = 4467.586983 C = 5027.753585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.066 4.066 3 Si 1.114 2.886 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.364 4.364 8 H 0.034 0.966 9 N -0.615 5.615 10 C 0.150 3.850 11 C -0.126 4.126 12 C -0.103 4.103 13 C 0.141 3.859 14 H 0.051 0.949 15 N -0.704 5.704 16 C 0.528 3.472 17 O -0.595 6.595 18 C -0.194 4.194 19 C -0.145 4.145 20 C -0.152 4.152 21 C 0.148 3.852 22 H 0.256 0.744 23 H 0.016 0.984 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.418 0.582 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.021 0.979 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -18.622 -2.528 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.263 4.263 3 Si 0.937 3.063 4 H -0.208 1.208 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.494 4.494 8 H 0.052 0.948 9 N -0.340 5.340 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.070 0.930 15 N -0.355 5.355 16 C 0.316 3.684 17 O -0.476 6.476 18 C -0.214 4.214 19 C -0.182 4.182 20 C -0.189 4.189 21 C 0.021 3.979 22 H 0.065 0.935 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.255 0.745 30 H 0.180 0.820 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.188 -16.381 -2.568 16.885 hybrid contribution -0.091 -1.404 0.368 1.454 sum 3.097 -17.785 -2.199 18.186 Atomic orbital electron populations 1.70901 1.07196 1.29471 1.49973 1.27210 0.96656 1.04502 0.97967 0.82885 0.73950 0.72210 0.77208 1.20801 1.20642 1.20610 1.20135 0.96551 0.89974 1.42693 0.94792 1.44277 1.47176 1.01513 1.41061 1.21049 0.89836 0.98377 0.88219 1.22011 1.01524 0.95092 0.97874 1.21613 0.97284 0.97371 0.97856 1.21213 0.98511 0.81816 0.95067 0.93029 1.45834 1.13841 1.12811 1.63062 1.20579 0.81678 0.89915 0.76200 1.90707 1.45929 1.53507 1.57429 1.22289 1.05051 0.93974 1.00113 1.23035 1.01661 1.04327 0.89205 1.23014 0.89998 1.04019 1.01849 1.21194 0.96290 0.86095 0.94316 0.93454 0.96630 0.93660 0.93393 0.89044 0.89050 0.90194 0.74482 0.82039 0.90630 0.84256 0.84683 0.90456 0.95996 0.96017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 12.45 21.65 0.27 -57.70 16 2 C -0.07 -3.94 4.69 84.86 0.40 -3.54 16 3 Si 1.11 53.34 29.98 68.60 2.06 55.40 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.36 -22.06 9.48 84.03 0.80 -21.26 16 8 H 0.03 2.16 7.94 -2.91 -0.02 2.14 16 9 N -0.62 -32.94 2.83 -698.24 -1.98 -34.92 16 10 C 0.15 7.13 4.72 86.51 0.41 7.54 16 11 C -0.13 -4.47 6.10 30.82 0.19 -4.28 16 12 C -0.10 -3.04 5.35 30.62 0.16 -2.87 16 13 C 0.14 5.14 2.60 45.07 0.12 5.25 16 14 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 15 N -0.70 -19.68 5.08 -442.15 -2.25 -21.93 16 16 C 0.53 16.45 7.58 87.66 0.66 17.11 16 17 O -0.60 -25.52 15.92 -3.03 -0.05 -25.57 16 18 C -0.19 -3.83 6.19 -11.54 -0.07 -3.90 16 19 C -0.14 -2.57 10.23 30.60 0.31 -2.25 16 20 C -0.15 -2.87 10.04 30.60 0.31 -2.56 16 21 C 0.15 6.84 6.09 86.36 0.53 7.37 16 22 H 0.26 16.05 6.71 -92.71 -0.62 15.43 16 23 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 24 H 0.04 2.44 6.38 -2.39 -0.02 2.43 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 26 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.42 7.96 8.60 -92.71 -0.80 7.16 16 30 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 35 H 0.02 1.13 7.93 -2.39 -0.02 1.11 16 36 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -77.75 294.62 2.28 -75.47 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.41 Total: 12.64 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 3.81 Total: -3.39 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.95 Total: -114.55 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 2.06 Total: 55.40 kcal Total: -77.75 2.28 -75.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586066845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.611 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds