Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00163 * 2 1 4 4 H 1.48502 * 109.47256 * 269.99810 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47050 * 150.00072 * 3 2 1 7 7 C 1.38819 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99552 * 197.35752 * 7 2 1 9 9 N 1.36932 * 120.00090 * 17.36275 * 7 2 1 10 10 C 1.46931 * 120.62741 * 207.67802 * 9 7 2 11 11 C 1.53186 * 108.77407 * 233.60750 * 10 9 7 12 12 C 1.53038 * 109.31594 * 305.36316 * 11 10 9 13 13 C 1.53049 * 109.53338 * 61.36713 * 12 11 10 14 14 H 1.09000 * 109.52342 * 58.60253 * 13 12 11 15 15 N 1.46499 * 109.49309 * 178.68257 * 13 12 11 16 16 C 1.34778 * 119.99634 * 204.83540 * 15 13 12 17 17 O 1.21275 * 120.00371 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99544 * 180.02562 * 16 15 13 19 19 C 1.53002 * 117.49868 * 248.74491 * 18 16 15 20 20 C 1.53005 * 117.49638 * 180.08548 * 18 16 15 21 21 C 1.46923 * 120.63533 * 27.67789 * 9 7 2 22 22 H 0.97006 * 119.99875 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.58779 * 113.82118 * 10 9 7 24 24 H 1.09004 * 109.70172 * 353.46873 * 10 9 7 25 25 H 1.09007 * 109.49791 * 185.41494 * 11 10 9 26 26 H 1.08998 * 109.49690 * 65.31853 * 11 10 9 27 27 H 1.08994 * 109.46003 * 301.34950 * 12 11 10 28 28 H 1.09000 * 109.46433 * 181.38633 * 12 11 10 29 29 H 0.96995 * 120.00132 * 24.84228 * 15 13 12 30 30 H 1.09001 * 115.55279 * 34.42451 * 18 16 15 31 31 H 1.08997 * 117.49799 * 0.02562 * 19 18 16 32 32 H 1.08999 * 117.49541 * 145.02357 * 19 18 16 33 33 H 1.08997 * 117.50048 * 214.97835 * 20 18 16 34 34 H 1.09002 * 117.49720 * 359.97438 * 20 18 16 35 35 H 1.08998 * 109.58358 * 6.60662 * 21 9 7 36 36 H 1.08997 * 109.58828 * 246.18068 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2785 9 7 1.3722 -2.3609 -0.3549 10 6 1.8192 -3.6549 0.1786 11 6 2.0744 -4.6093 -0.9921 12 6 0.8188 -4.6887 -1.8635 13 6 0.5009 -3.3030 -2.4303 14 1 1.3492 -2.9446 -3.0134 15 7 -0.6828 -3.3862 -3.2895 16 6 -0.8706 -2.4781 -4.2675 17 8 -0.0596 -1.5924 -4.4367 18 6 -2.0886 -2.5633 -5.1510 19 6 -1.8724 -2.9416 -6.6176 20 6 -2.2437 -1.5042 -6.2443 21 6 0.2278 -2.3339 -1.2759 22 1 -0.4850 0.8401 0.0004 23 1 1.0468 -4.0695 0.8264 24 1 2.7392 -3.5198 0.7474 25 1 2.3137 -5.6009 -0.6077 26 1 2.9083 -4.2388 -1.5883 27 1 -0.0202 -5.0356 -1.2605 28 1 0.9894 -5.3861 -2.6836 29 1 -1.3313 -4.0947 -3.1544 30 1 -2.9963 -2.9234 -4.6668 31 1 -0.8494 -3.1293 -6.9434 32 1 -2.6381 -3.5504 -7.0984 33 1 -3.2535 -1.1680 -6.4797 34 1 -1.4650 -0.7456 -6.3243 35 1 0.0985 -1.3253 -1.6685 36 1 -0.6744 -2.6408 -0.7468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586066846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = 3.044799 kcal Electronic energy + Delta-G solvation = -17506.554225 eV Core-core repulsion = 14798.776478 eV Total energy + Delta-G solvation = -2707.777747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63026 -37.55668 -35.80496 -34.02606 -32.62106 -30.01987 -28.94788 -25.23979 -24.36826 -22.40798 -22.14504 -21.39652 -19.77269 -19.09384 -17.13456 -16.72893 -15.62705 -15.04362 -14.73355 -14.18006 -14.03031 -13.73041 -13.39681 -12.97431 -12.50253 -12.27871 -12.25979 -11.87117 -11.52552 -10.99121 -10.74254 -10.70926 -10.55923 -10.47320 -10.42108 -10.20728 -9.93267 -9.90808 -9.49237 -9.28984 -8.47595 -8.39426 -6.62873 -5.72303 -3.15598 2.90044 3.45261 3.52098 3.53021 3.56785 3.98255 4.56870 4.81713 4.92815 4.94207 5.29122 5.38788 5.44043 5.55557 5.57349 5.66004 5.71418 5.82178 5.96935 6.11189 6.17125 6.18794 6.36380 6.44182 6.53661 6.72886 6.80128 6.97884 7.01807 7.34166 7.76429 7.86502 8.01893 8.51304 8.74434 9.26242 9.90341 10.45157 11.35627 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.008477 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.609046 B = 3302.416814 C = 4352.144205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.080 0.920 15 N -0.717 5.717 16 C 0.537 3.463 17 O -0.534 6.534 18 C -0.190 4.190 19 C -0.157 4.157 20 C -0.150 4.150 21 C 0.167 3.833 22 H 0.253 0.747 23 H 0.018 0.982 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.392 0.608 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 -9.721 -8.904 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.098 0.902 15 N -0.367 5.367 16 C 0.322 3.678 17 O -0.411 6.411 18 C -0.212 4.212 19 C -0.194 4.194 20 C -0.187 4.187 21 C 0.040 3.960 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.225 0.775 30 H 0.139 0.861 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.939 -8.917 -8.974 13.250 hybrid contribution -0.079 0.430 0.151 0.463 sum -4.018 -8.487 -8.823 12.885 Atomic orbital electron populations 1.70023 1.05342 1.25519 1.53407 1.25038 0.95279 0.98506 1.00501 0.86291 0.79051 0.83620 0.77818 1.21263 1.21776 1.20408 1.19162 0.92745 0.84869 1.41860 0.91573 1.43969 1.36027 1.01602 1.49552 1.20952 0.97714 0.86892 0.92865 1.22004 0.96995 0.99309 0.98784 1.21672 0.98891 0.96071 0.98726 1.21965 0.87131 0.96818 0.92983 0.90156 1.45991 1.26286 1.30793 1.33633 1.19542 0.86162 0.81615 0.80445 1.90729 1.45641 1.34051 1.70636 1.22239 0.99128 1.08302 0.91483 1.22908 1.03181 0.98956 0.94403 1.22932 1.03397 0.92571 0.99794 1.21091 0.88664 0.99022 0.87231 0.93674 0.96436 0.92629 0.92644 0.92144 0.92276 0.93148 0.77464 0.86150 0.88446 0.88161 0.88195 0.87397 0.88732 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 11.19 55.49 0.62 -26.71 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 22.92 29.59 -169.99 -5.03 17.89 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -7.36 9.59 -15.06 -0.14 -7.50 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -15.29 2.99 -172.32 -0.52 -15.81 16 10 C 0.14 3.01 6.51 -3.71 -0.02 2.98 16 11 C -0.13 -2.26 6.08 -26.62 -0.16 -2.43 16 12 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16 13 C 0.12 2.34 2.60 -67.81 -0.18 2.16 16 14 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 15 N -0.72 -12.12 5.08 -53.69 -0.27 -12.39 16 16 C 0.54 9.77 7.58 -10.98 -0.08 9.68 16 17 O -0.53 -12.37 15.92 5.56 0.09 -12.28 16 18 C -0.19 -2.52 6.19 -91.77 -0.57 -3.09 16 19 C -0.16 -1.70 10.24 -26.69 -0.27 -1.98 16 20 C -0.15 -1.85 10.05 -26.69 -0.27 -2.12 16 21 C 0.17 4.18 4.88 -3.72 -0.02 4.16 16 22 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 25 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 5.18 8.60 -40.82 -0.35 4.83 16 30 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16 35 H 0.09 2.80 6.04 -51.93 -0.31 2.48 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 295.52 15.07 4.45 4.45 Total: -1.00 -33.50 295.52 -8.25 -41.75 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.65 Total: 3.19 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.95 Total: -0.09 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.17 Total: -54.90 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.50 -8.25 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586066846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.792 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds