Wall clock time and date at job start Sun Mar 29 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00163 * 2 1 4 4 H 1.48502 * 109.47256 * 269.99810 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47050 * 150.00072 * 3 2 1 7 7 C 1.38819 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99552 * 197.35752 * 7 2 1 9 9 N 1.36932 * 120.00090 * 17.36275 * 7 2 1 10 10 C 1.46931 * 120.62741 * 207.67802 * 9 7 2 11 11 C 1.53186 * 108.77407 * 233.60750 * 10 9 7 12 12 C 1.53038 * 109.31594 * 305.36316 * 11 10 9 13 13 C 1.53049 * 109.53338 * 61.36713 * 12 11 10 14 14 H 1.09000 * 109.52342 * 58.60253 * 13 12 11 15 15 N 1.46499 * 109.49309 * 178.68257 * 13 12 11 16 16 C 1.34778 * 119.99634 * 204.83540 * 15 13 12 17 17 O 1.21275 * 120.00371 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99544 * 180.02562 * 16 15 13 19 19 C 1.53002 * 117.49868 * 248.74491 * 18 16 15 20 20 C 1.53005 * 117.49638 * 180.08548 * 18 16 15 21 21 C 1.46923 * 120.63533 * 27.67789 * 9 7 2 22 22 H 0.97006 * 119.99875 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.58779 * 113.82118 * 10 9 7 24 24 H 1.09004 * 109.70172 * 353.46873 * 10 9 7 25 25 H 1.09007 * 109.49791 * 185.41494 * 11 10 9 26 26 H 1.08998 * 109.49690 * 65.31853 * 11 10 9 27 27 H 1.08994 * 109.46003 * 301.34950 * 12 11 10 28 28 H 1.09000 * 109.46433 * 181.38633 * 12 11 10 29 29 H 0.96995 * 120.00132 * 24.84228 * 15 13 12 30 30 H 1.09001 * 115.55279 * 34.42451 * 18 16 15 31 31 H 1.08997 * 117.49799 * 0.02562 * 19 18 16 32 32 H 1.08999 * 117.49541 * 145.02357 * 19 18 16 33 33 H 1.08997 * 117.50048 * 214.97835 * 20 18 16 34 34 H 1.09002 * 117.49720 * 359.97438 * 20 18 16 35 35 H 1.08998 * 109.58358 * 6.60662 * 21 9 7 36 36 H 1.08997 * 109.58828 * 246.18068 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2785 9 7 1.3722 -2.3609 -0.3549 10 6 1.8192 -3.6549 0.1786 11 6 2.0744 -4.6093 -0.9921 12 6 0.8188 -4.6887 -1.8635 13 6 0.5009 -3.3030 -2.4303 14 1 1.3492 -2.9446 -3.0134 15 7 -0.6828 -3.3862 -3.2895 16 6 -0.8706 -2.4781 -4.2675 17 8 -0.0596 -1.5924 -4.4367 18 6 -2.0886 -2.5633 -5.1510 19 6 -1.8724 -2.9416 -6.6176 20 6 -2.2437 -1.5042 -6.2443 21 6 0.2278 -2.3339 -1.2759 22 1 -0.4850 0.8401 0.0004 23 1 1.0468 -4.0695 0.8264 24 1 2.7392 -3.5198 0.7474 25 1 2.3137 -5.6009 -0.6077 26 1 2.9083 -4.2388 -1.5883 27 1 -0.0202 -5.0356 -1.2605 28 1 0.9894 -5.3861 -2.6836 29 1 -1.3313 -4.0947 -3.1544 30 1 -2.9963 -2.9234 -4.6668 31 1 -0.8494 -3.1293 -6.9434 32 1 -2.6381 -3.5504 -7.0984 33 1 -3.2535 -1.1680 -6.4797 34 1 -1.4650 -0.7456 -6.3243 35 1 0.0985 -1.3253 -1.6685 36 1 -0.6744 -2.6408 -0.7468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586066846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:47 Heat of formation + Delta-G solvation = -20.451000 kcal Electronic energy + Delta-G solvation = -17507.573080 eV Core-core repulsion = 14798.776478 eV Total energy + Delta-G solvation = -2708.796602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07824 -39.15911 -37.01435 -35.77960 -34.43546 -31.94188 -30.62122 -27.27531 -25.69313 -23.95091 -23.31816 -22.95682 -21.33771 -20.61391 -18.77625 -18.37882 -17.26808 -16.74245 -16.18400 -15.79736 -15.58174 -15.31041 -15.03469 -14.70324 -14.18282 -14.01974 -13.60793 -13.43902 -12.95937 -12.72289 -12.51932 -12.43944 -12.26833 -12.05570 -11.73442 -11.66070 -11.52307 -11.38810 -11.27131 -10.79656 -10.59239 -10.08392 -8.72216 -7.91943 -5.37741 1.38024 1.43915 1.49748 1.55728 2.21340 2.47190 2.93779 3.24102 3.65755 3.80853 3.89636 3.96928 4.00783 4.12610 4.25410 4.30333 4.46537 4.60772 4.73773 4.80473 4.89433 4.92326 5.04671 5.07151 5.18867 5.21522 5.23842 5.31942 5.47200 5.51506 5.59412 5.76377 6.33743 6.66365 7.08972 7.37382 7.82462 8.31363 9.12766 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.008477 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.609046 B = 3302.416814 C = 4352.144205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.052 4.052 3 Si 0.962 3.038 4 H -0.296 1.296 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.134 3.866 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.129 3.871 14 H 0.046 0.954 15 N -0.704 5.704 16 C 0.526 3.474 17 O -0.596 6.596 18 C -0.200 4.200 19 C -0.128 4.128 20 C -0.161 4.161 21 C 0.179 3.821 22 H 0.247 0.753 23 H 0.023 0.977 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.415 0.585 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 -12.250 -9.732 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.248 4.248 3 Si 0.791 3.209 4 H -0.223 1.223 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.023 3.977 14 H 0.064 0.936 15 N -0.355 5.355 16 C 0.314 3.686 17 O -0.477 6.477 18 C -0.221 4.221 19 C -0.165 4.165 20 C -0.198 4.198 21 C 0.052 3.948 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.252 0.748 30 H 0.171 0.829 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -4.531 -11.519 -9.789 15.781 hybrid contribution 0.116 1.187 0.423 1.265 sum -4.414 -10.332 -9.366 14.628 Atomic orbital electron populations 1.70175 1.06702 1.25611 1.55160 1.25816 0.96100 1.01667 1.01204 0.85334 0.78654 0.79815 0.77145 1.22339 1.21586 1.18410 1.19529 0.93090 0.86298 1.40683 0.91335 1.44260 1.35998 1.02740 1.50440 1.21191 0.97610 0.85556 0.94680 1.21908 0.96988 1.00194 0.97044 1.21637 0.99117 0.93778 0.99825 1.21499 0.87161 0.98035 0.91019 0.93577 1.45833 1.25870 1.31194 1.32638 1.20540 0.86953 0.80421 0.80682 1.90701 1.48217 1.36443 1.72345 1.22278 0.97687 1.10188 0.91956 1.23049 1.03841 0.97833 0.91791 1.23018 1.04095 0.92818 0.99869 1.20781 0.88083 0.97480 0.88447 0.94394 0.95931 0.92597 0.88264 0.93165 0.90578 0.89568 0.74835 0.82915 0.89608 0.84030 0.85191 0.90692 0.94085 0.98187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 11.19 21.65 0.24 -58.86 16 2 C -0.05 -3.15 4.91 84.86 0.42 -2.74 16 3 Si 0.96 48.64 29.59 68.60 2.03 50.67 16 4 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.27 -15.62 9.59 84.04 0.81 -14.82 16 8 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 9 N -0.61 -32.36 2.99 -699.11 -2.09 -34.46 16 10 C 0.13 5.55 6.51 86.36 0.56 6.11 16 11 C -0.12 -3.87 6.08 30.67 0.19 -3.68 16 12 C -0.11 -3.16 5.35 30.62 0.16 -3.00 16 13 C 0.13 5.21 2.60 45.07 0.12 5.32 16 14 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 15 N -0.70 -23.31 5.08 -442.16 -2.25 -25.56 16 16 C 0.53 19.33 7.58 87.66 0.66 20.00 16 17 O -0.60 -29.18 15.92 -3.02 -0.05 -29.23 16 18 C -0.20 -4.95 6.19 -11.54 -0.07 -5.02 16 19 C -0.13 -2.41 10.24 30.62 0.31 -2.10 16 20 C -0.16 -3.77 10.05 30.62 0.31 -3.47 16 21 C 0.18 9.28 4.88 86.36 0.42 9.71 16 22 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 2.26 7.94 -2.39 -0.02 2.24 16 25 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.41 9.93 8.60 -92.71 -0.80 9.13 16 30 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.27 7.67 -2.39 -0.02 2.25 16 35 H 0.04 2.56 6.04 -2.39 -0.01 2.55 16 36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -78.88 295.52 2.04 -76.84 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.27 Total: 14.26 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 3.89 Total: 6.33 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -4.10 Total: -118.88 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -78.88 2.04 -76.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586066846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.391 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds